Initializing AMReX (24.11-12-g8e7bb00d1d62)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-12-g8e7bb00d1d62) initialized Starting run at 14:03:16 UTC on 2024-11-08. Successfully read inputs file ... Castro git describe: 24.11-1-gac9568bbc AMReX git describe: 24.11-12-g8e7bb00d1 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014285346 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.365574698 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.355163543 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327845088 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32844047 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366070439 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312001836 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310888444 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30731089 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.3087697 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311750148 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00776248 seconds Ending run at 14:03:19 UTC on 2024-11-08. Run time = 3.490290443 Run time without initialization = 3.306322749 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4897 ... 3.4899 ... 3.4903 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2375 2.3094 2.3726 67.98% Gravity::make_radial_gravity() 21 0.2903 0.3072 0.32 9.17% check_for_negative_density() 10 0.04222 0.108 0.1835 5.26% Castro::initData() 1 0.04754 0.08773 0.1196 3.43% Castro::estTimeStep() 21 0.02484 0.0611 0.1021 2.93% FabArray::ParallelCopy_finish() 41 0.04786 0.05891 0.09702 2.78% amrex::Copy() 193 0.06203 0.07768 0.09002 2.58% FabArray::setVal() 143 0.05192 0.06527 0.0722 2.07% Castro::normalize_species() 62 0.04336 0.05001 0.05822 1.67% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04702 0.04877 1.40% FabArray::ParallelCopy_nowait() 41 0.03529 0.04048 0.04451 1.28% StateData::FillBoundary(geom) 41 0.03047 0.03434 0.0374 1.07% FillPatchIterator::Initialize 41 0.02761 0.03077 0.03277 0.94% Gravity::interpolate_monopole_grav() 21 0.02775 0.02918 0.03025 0.87% Castro::construct_new_gravity_source() 10 0.02295 0.02441 0.02598 0.74% Castro::computeTemp() 63 0.0205 0.02142 0.02244 0.64% Castro::initialize_do_advance() 10 0.01175 0.01529 0.01668 0.48% MultiFab::contains_nan() 20 0.01013 0.01211 0.01411 0.40% Castro::initialize_advance() 10 0.005268 0.01079 0.01318 0.38% FabArray::Saxpy() 20 0.01033 0.01177 0.01314 0.38% VisMF::Write(FabArray) 2 0.009057 0.009648 0.01289 0.37% FabArray::setDomainBndry() 41 0.007519 0.0098 0.01205 0.35% Amr::writePlotFile() 2 0.007466 0.009495 0.009947 0.28% Castro::construct_old_gravity_source() 10 0.006417 0.008638 0.009401 0.27% Castro::enforce_min_density() 62 0.007117 0.007303 0.007668 0.22% Castro::construct_new_source() 50 0.005667 0.006216 0.006608 0.19% Amr::coarseTimeStep() 10 0.002931 0.004319 0.005751 0.16% main() 1 0.003668 0.003937 0.004361 0.12% Gravity::get_new_grav_vector() 11 0.002736 0.003147 0.003573 0.10% Gravity::get_old_grav_vector() 10 0.001428 0.001948 0.002394 0.07% Castro::finalize_do_advance() 10 0.0005005 0.0009211 0.001082 0.03% AmrLevel::FillPatch() 41 0.0007524 0.0008232 0.0009278 0.03% Amr::timeStep() 10 0.0001722 0.0002206 0.00039 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000272 0.0002927 0.0003349 0.01% Castro::do_advance_ctu() 10 0.0001243 0.0001545 0.0001964 0.01% Castro::clean_state() 62 0.0001434 0.0001626 0.0001836 0.01% StateDataPhysBCFunct::() 41 0.0001061 0.0001215 0.0001521 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.0001171 0.0001392 0.00% Castro::do_old_sources() 10 7.247e-05 9.065e-05 0.0001229 0.00% FabArray::ParallelCopy() 41 8.463e-05 9.176e-05 0.0001002 0.00% Amr::FinalizeInit() 1 3.793e-06 1.653e-05 9.723e-05 0.00% Castro::Castro() 1 5.336e-05 7.54e-05 9.721e-05 0.00% FillPatchSingleLevel 41 7.354e-05 8.216e-05 9.468e-05 0.00% Castro::construct_old_source() 50 4.716e-05 6.617e-05 7.671e-05 0.00% Amr::defBaseLevel() 1 4.1e-05 5.14e-05 6.474e-05 0.00% Castro::do_new_sources() 10 4.68e-05 5.544e-05 6.326e-05 0.00% Castro::subcycle_advance_ctu() 10 4.541e-05 5.318e-05 6.081e-05 0.00% Castro::advance() 10 3.636e-05 4.815e-05 5.668e-05 0.00% Castro::apply_source_to_state() 20 3.952e-05 4.367e-05 5.133e-05 0.00% Castro::construct_old_gravity() 10 2.987e-05 3.873e-05 4.866e-05 0.00% Castro::construct_new_gravity() 10 2.639e-05 3.285e-05 3.786e-05 0.00% Castro::check_for_nan() 20 2.595e-05 3.001e-05 3.27e-05 0.00% Amr::InitializeInit() 1 2.769e-06 6.224e-06 2.883e-05 0.00% Castro::expand_state() 10 2.024e-05 2.43e-05 2.796e-05 0.00% Castro::post_timestep() 10 1.556e-05 1.694e-05 1.912e-05 0.00% Castro::post_init() 1 8.68e-06 1.071e-05 1.355e-05 0.00% Castro::computeNewDt() 9 7.98e-06 8.965e-06 9.791e-06 0.00% Castro::computeInitialDt() 2 3.18e-06 4.062e-06 5.511e-06 0.00% Amr::init() 1 1.683e-06 1.987e-06 2.357e-06 0.00% Amr::initialInit() 1 1.515e-06 1.867e-06 2.197e-06 0.00% Other 200 0.01539 0.01899 0.02096 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.49 3.49 3.49 100.00% Amr::coarseTimeStep() 10 3.294 3.294 3.294 94.38% Amr::timeStep() 10 3.278 3.28 3.281 94.01% Castro::advance() 10 3.262 3.262 3.263 93.47% Castro::subcycle_advance_ctu() 10 3.186 3.19 3.209 91.93% Castro::do_advance_ctu() 10 3.186 3.19 3.209 91.93% Castro::construct_ctu_hydro_source() 10 2.437 2.44 2.442 69.97% Gravity::make_radial_gravity() 21 0.305 0.3215 0.3329 9.54% AmrLevel::FillPatch() 41 0.1853 0.2075 0.2287 6.55% Gravity::get_new_grav_vector() 11 0.2073 0.2098 0.2117 6.07% Castro::construct_old_gravity() 10 0.1819 0.196 0.2061 5.91% Gravity::get_old_grav_vector() 10 0.1807 0.1952 0.2054 5.89% FillPatchIterator::Initialize 41 0.1559 0.1748 0.2029 5.81% Castro::construct_new_gravity() 10 0.1827 0.1851 0.1866 5.35% Amr::init() 1 0.1834 0.1836 0.1836 5.26% check_for_negative_density() 10 0.04222 0.108 0.1835 5.26% Castro::initialize_do_advance() 10 0.1587 0.1705 0.182 5.22% Amr::initialInit() 1 0.169 0.1696 0.1697 4.86% FillPatchIterator::FillFromLevel0() 41 0.119 0.1342 0.1677 4.81% FillPatchSingleLevel 41 0.1189 0.1341 0.1676 4.80% Amr::InitializeInit() 1 0.06821 0.1088 0.1409 4.04% Amr::defBaseLevel() 1 0.06821 0.1087 0.1409 4.04% Castro::clean_state() 62 0.1179 0.1253 0.1329 3.81% FabArray::ParallelCopy() 41 0.08821 0.09957 0.1325 3.80% Castro::expand_state() 10 0.1053 0.117 0.1308 3.75% Castro::initData() 1 0.05137 0.09194 0.1238 3.55% Castro::estTimeStep() 21 0.02484 0.0611 0.1021 2.93% Castro::do_old_sources() 10 0.0915 0.0989 0.1019 2.92% Amr::FinalizeInit() 1 0.02868 0.06083 0.1015 2.91% FabArray::ParallelCopy_finish() 41 0.04786 0.05891 0.09702 2.78% amrex::Copy() 193 0.06203 0.07768 0.09002 2.58% Castro::computeInitialDt() 2 0.002266 0.03438 0.07493 2.15% Castro::initialize_advance() 10 0.04967 0.06911 0.07329 2.10% FabArray::setVal() 143 0.05192 0.06527 0.0722 2.07% Castro::computeTemp() 63 0.06487 0.06873 0.07088 2.03% Castro::do_new_sources() 10 0.05796 0.06454 0.06843 1.96% Castro::normalize_species() 62 0.04336 0.05001 0.05822 1.67% Castro::reset_internal_energy(MultiFab) 63 0.04436 0.04731 0.04906 1.41% Castro::reset_internal_energy(Fab) 1008 0.04408 0.04702 0.04877 1.40% FabArray::ParallelCopy_nowait() 41 0.03538 0.04057 0.04459 1.28% StateDataPhysBCFunct::() 41 0.03058 0.03446 0.03753 1.08% StateData::FillBoundary(geom) 41 0.03047 0.03434 0.0374 1.07% Castro::construct_new_source() 50 0.02861 0.03063 0.03232 0.93% Gravity::interpolate_monopole_grav() 21 0.02775 0.02918 0.03025 0.87% Castro::post_init() 1 0.02505 0.02568 0.0262 0.75% Castro::construct_new_gravity_source() 10 0.02295 0.02441 0.02598 0.74% Castro::finalize_do_advance() 10 0.01424 0.01869 0.02575 0.74% Amr::writePlotFile() 2 0.02174 0.02184 0.02227 0.64% Castro::post_timestep() 10 0.01634 0.01745 0.01891 0.54% Castro::check_for_nan() 20 0.01016 0.01214 0.01415 0.41% MultiFab::contains_nan() 20 0.01013 0.01211 0.01411 0.40% Castro::apply_source_to_state() 20 0.01037 0.01181 0.01319 0.38% FabArray::Saxpy() 20 0.01033 0.01177 0.01314 0.38% VisMF::Write(FabArray) 2 0.009057 0.009648 0.01289 0.37% FabArray::setDomainBndry() 41 0.007519 0.0098 0.01205 0.35% Castro::Castro() 1 0.009675 0.01065 0.0116 0.33% Castro::construct_old_source() 50 0.006464 0.008704 0.009478 0.27% Castro::construct_old_gravity_source() 10 0.006417 0.008638 0.009401 0.27% Castro::computeNewDt() 9 0.00896 0.008968 0.008973 0.26% Castro::enforce_min_density() 62 0.007117 0.007303 0.007668 0.22% Other 200 0.0255 0.03028 0.03345 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 45 B 87 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6757 KiB 6760 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4560 KiB 4566 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 200 KiB 225 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-12-g8e7bb00d1d62) finalized