Initializing AMReX (24.11-12-g8e7bb00d1d62)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-12-g8e7bb00d1d62) initialized Starting run at 06:39:56 UTC on 2024-11-08. Successfully read inputs file ... Castro git describe: 24.11 AMReX git describe: 24.11-12-g8e7bb00d1 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015184089 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.363391627 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.379539219 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346698119 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.377539239 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.336163581 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309101729 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.309701825 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308509859 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30960159 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311783416 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007791771 seconds Ending run at 06:40:00 UTC on 2024-11-08. Run time = 3.615987985 Run time without initialization = 3.404156809 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.6155 ... 3.6157 ... 3.6160 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2789 2.3527 2.3946 66.22% Gravity::make_radial_gravity() 21 0.305 0.3129 0.3216 8.89% check_for_negative_density() 10 0.0644 0.1085 0.1854 5.13% Castro::initData() 1 0.06705 0.0972 0.1416 3.92% Castro::estTimeStep() 21 0.03608 0.07874 0.1121 3.10% amrex::Copy() 193 0.0729 0.07795 0.08621 2.38% FabArray::setVal() 143 0.06251 0.07094 0.08264 2.29% FabArray::ParallelCopy_finish() 41 0.03674 0.0533 0.06027 1.67% Castro::reset_internal_energy(Fab) 1008 0.04725 0.04871 0.05021 1.39% Amr::writePlotFile() 2 0.04673 0.04926 0.04992 1.38% Castro::normalize_species() 62 0.04222 0.0434 0.04471 1.24% FabArray::ParallelCopy_nowait() 41 0.04017 0.04146 0.04257 1.18% FillPatchIterator::Initialize 41 0.02965 0.03355 0.03527 0.98% StateData::FillBoundary(geom) 41 0.0317 0.033 0.0352 0.97% Gravity::interpolate_monopole_grav() 21 0.02894 0.03036 0.03133 0.87% Castro::construct_new_gravity_source() 10 0.02413 0.02593 0.02896 0.80% Castro::computeTemp() 63 0.02114 0.02148 0.0224 0.62% Castro::initialize_do_advance() 10 0.01466 0.01795 0.02094 0.58% FabArray::Saxpy() 20 0.0117 0.01257 0.01358 0.38% Castro::initialize_advance() 10 0.009696 0.01151 0.01342 0.37% VisMF::Write(FabArray) 2 0.0095 0.0101 0.01278 0.35% FabArray::setDomainBndry() 41 0.00752 0.01017 0.01254 0.35% MultiFab::contains_nan() 20 0.00999 0.01088 0.01179 0.33% Castro::initMFs() 1 0.006458 0.008463 0.01043 0.29% Castro::construct_old_gravity_source() 10 0.00827 0.009536 0.009915 0.27% Castro::construct_new_source() 50 0.006005 0.006147 0.006285 0.17% Gravity::get_new_grav_vector() 11 0.003567 0.004366 0.005642 0.16% main() 1 0.004111 0.004294 0.004617 0.13% Amr::coarseTimeStep() 10 0.00181 0.002483 0.00296 0.08% Gravity::get_old_grav_vector() 10 0.001623 0.002082 0.002495 0.07% Castro::finalize_do_advance() 10 0.0008315 0.001108 0.001519 0.04% AmrLevel::FillPatch() 41 0.0008547 0.0009195 0.001065 0.03% Amr::timeStep() 10 0.0001734 0.0002189 0.0004438 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002779 0.0002948 0.0003045 0.01% Castro::clean_state() 62 0.0001512 0.0001655 0.0002054 0.01% Castro::do_advance_ctu() 10 0.0001274 0.0001477 0.0001612 0.00% FillPatchIterator::FillFromLevel0() 41 9.952e-05 0.0001102 0.0001274 0.00% StateDataPhysBCFunct::() 41 0.0001058 0.0001165 0.0001256 0.00% FabArray::ParallelCopy() 41 8.528e-05 9.573e-05 0.0001057 0.00% Castro::do_old_sources() 10 6.46e-05 8.957e-05 0.0001052 0.00% Amr::FinalizeInit() 1 3.997e-06 1.702e-05 0.0001018 0.00% Castro::construct_old_source() 50 6.087e-05 7.65e-05 9.945e-05 0.00% Castro::Castro() 1 5.611e-05 6.979e-05 9.029e-05 0.00% FillPatchSingleLevel 41 7.146e-05 7.888e-05 8.448e-05 0.00% Amr::defBaseLevel() 1 4.858e-05 6.12e-05 7.641e-05 0.00% Castro::do_new_sources() 10 4.762e-05 5.52e-05 6.562e-05 0.00% Castro::subcycle_advance_ctu() 10 4.377e-05 4.765e-05 5.339e-05 0.00% Castro::apply_source_to_state() 20 3.756e-05 4.438e-05 5.314e-05 0.00% Castro::advance() 10 3.969e-05 4.425e-05 4.966e-05 0.00% Castro::construct_old_gravity() 10 3.138e-05 3.651e-05 4.405e-05 0.00% Castro::construct_new_gravity() 10 2.826e-05 3.405e-05 3.978e-05 0.00% Castro::expand_state() 10 2.11e-05 2.588e-05 3.235e-05 0.00% Castro::check_for_nan() 20 2.096e-05 2.688e-05 3.16e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.93e-06 1.513e-05 1.989e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.698e-05 1.902e-05 0.00% Castro::post_init() 1 9.593e-06 1.14e-05 1.505e-05 0.00% Amr::initialInit() 1 1.612e-06 3.247e-06 1.283e-05 0.00% Castro::computeNewDt() 9 9.263e-06 9.941e-06 1.145e-05 0.00% Amr::InitializeInit() 1 2.862e-06 4.49e-06 1.132e-05 0.00% Castro::computeInitialDt() 2 3.72e-06 4.173e-06 4.83e-06 0.00% Amr::init() 1 2.116e-06 2.502e-06 3.004e-06 0.00% Other 260 0.01789 0.02173 0.02482 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.615 3.616 3.616 100.00% Amr::coarseTimeStep() 10 3.353 3.353 3.353 92.71% Amr::timeStep() 10 3.339 3.34 3.34 92.37% Castro::advance() 10 3.322 3.323 3.324 91.91% Castro::subcycle_advance_ctu() 10 3.237 3.246 3.252 89.93% Castro::do_advance_ctu() 10 3.237 3.246 3.252 89.93% Castro::construct_ctu_hydro_source() 10 2.481 2.484 2.486 68.76% Gravity::make_radial_gravity() 21 0.3205 0.3289 0.3367 9.31% Gravity::get_new_grav_vector() 11 0.221 0.2236 0.2264 6.26% AmrLevel::FillPatch() 41 0.191 0.2039 0.2169 6.00% Amr::init() 1 0.2111 0.2114 0.2115 5.85% Castro::construct_new_gravity() 10 0.1973 0.1997 0.2019 5.58% Castro::construct_old_gravity() 10 0.1868 0.1916 0.1989 5.50% Gravity::get_old_grav_vector() 10 0.1861 0.191 0.1983 5.48% Amr::initialInit() 1 0.1958 0.1962 0.1964 5.43% check_for_negative_density() 10 0.0644 0.1085 0.1854 5.13% FillPatchIterator::Initialize 41 0.1565 0.172 0.1828 5.05% Castro::initialize_do_advance() 10 0.1625 0.1723 0.1805 4.99% Amr::InitializeInit() 1 0.09395 0.1207 0.1681 4.65% Amr::defBaseLevel() 1 0.09393 0.1207 0.1681 4.65% Castro::initData() 1 0.07068 0.1011 0.1459 4.04% FillPatchIterator::FillFromLevel0() 41 0.1114 0.1283 0.1371 3.79% FillPatchSingleLevel 41 0.1113 0.1281 0.137 3.79% Castro::expand_state() 10 0.1063 0.1165 0.1255 3.47% Castro::clean_state() 62 0.1189 0.1207 0.1248 3.45% Castro::estTimeStep() 21 0.03608 0.07874 0.1121 3.10% FabArray::ParallelCopy() 41 0.07807 0.09495 0.102 2.82% Amr::FinalizeInit() 1 0.02812 0.07549 0.1018 2.82% Castro::do_old_sources() 10 0.09079 0.09417 0.09682 2.68% amrex::Copy() 193 0.0729 0.07795 0.08621 2.38% FabArray::setVal() 143 0.06251 0.07094 0.08264 2.29% Castro::initialize_advance() 10 0.0674 0.07294 0.08202 2.27% Castro::computeInitialDt() 2 0.002362 0.04977 0.07631 2.11% Castro::do_new_sources() 10 0.06318 0.06845 0.07528 2.08% Castro::computeTemp() 63 0.0689 0.07049 0.07291 2.02% Amr::writePlotFile() 2 0.06217 0.06224 0.06243 1.73% FabArray::ParallelCopy_finish() 41 0.03674 0.0533 0.06027 1.67% Castro::reset_internal_energy(MultiFab) 63 0.04755 0.049 0.05051 1.40% Castro::reset_internal_energy(Fab) 1008 0.04725 0.04871 0.05021 1.39% Castro::normalize_species() 62 0.04222 0.0434 0.04471 1.24% FabArray::ParallelCopy_nowait() 41 0.04027 0.04155 0.04265 1.18% StateDataPhysBCFunct::() 41 0.03181 0.03312 0.03532 0.98% StateData::FillBoundary(geom) 41 0.0317 0.033 0.0352 0.97% Castro::construct_new_source() 50 0.03014 0.03208 0.03517 0.97% Gravity::interpolate_monopole_grav() 21 0.02894 0.03036 0.03133 0.87% Castro::construct_new_gravity_source() 10 0.02413 0.02593 0.02896 0.80% Castro::finalize_do_advance() 10 0.01328 0.02073 0.02749 0.76% Castro::post_init() 1 0.02491 0.02521 0.02534 0.70% Castro::post_timestep() 10 0.01604 0.01649 0.01727 0.48% Castro::Castro() 1 0.009736 0.01223 0.01467 0.41% Castro::apply_source_to_state() 20 0.01175 0.01262 0.01364 0.38% FabArray::Saxpy() 20 0.0117 0.01257 0.01358 0.38% VisMF::Write(FabArray) 2 0.0095 0.0101 0.01278 0.35% FabArray::setDomainBndry() 41 0.00752 0.01017 0.01254 0.35% Castro::check_for_nan() 20 0.01002 0.01091 0.01182 0.33% MultiFab::contains_nan() 20 0.00999 0.01088 0.01179 0.33% Castro::initMFs() 1 0.006458 0.008463 0.01043 0.29% Castro::construct_old_source() 50 0.008331 0.009612 0.009995 0.28% Castro::construct_old_gravity_source() 10 0.00827 0.009536 0.009915 0.27% Castro::computeNewDt() 9 0.009334 0.009364 0.009381 0.26% AmrLevel::AmrLevel(dm) 1 0.005537 0.007049 0.008497 0.23% Other 260 0.02262 0.02728 0.03127 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 39 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8667 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6712 KiB 6718 KiB 6719 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4473 KiB 4485 KiB 4492 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 198 KiB 214 KiB 229 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2753 KiB 2756 KiB 2757 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 33 KiB 41 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 67 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-12-g8e7bb00d1d62) finalized