Initializing AMReX (24.11-14-g650239813dcd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-14-g650239813dcd) initialized Starting run at 06:22:52 UTC on 2024-11-11. Successfully read inputs file ... Castro git describe: 24.11-1-gb38a018a1 AMReX git describe: 24.11-14-g650239813 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014531647 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350866241 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345347353 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.320950229 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322046523 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356161288 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.324893358 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.320679108 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.324443706 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.339298576 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.319122582 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008567272 seconds Ending run at 06:22:56 UTC on 2024-11-11. Run time = 3.530157862 Run time without initialization = 3.338045793 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.5290 ... 3.5297 ... 3.5302 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2769 2.3201 2.3851 67.56% Gravity::make_radial_gravity() 21 0.287 0.2972 0.315 8.92% check_for_negative_density() 10 0.07292 0.1388 0.1853 5.25% Castro::initData() 1 0.05015 0.0878 0.1249 3.54% Castro::estTimeStep() 21 0.03483 0.07125 0.1079 3.06% FabArray::ParallelCopy_finish() 41 0.04624 0.05831 0.1039 2.94% amrex::Copy() 193 0.05786 0.07602 0.0831 2.35% FabArray::setVal() 143 0.03818 0.06504 0.07771 2.20% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04801 0.05324 1.51% Castro::normalize_species() 62 0.04158 0.04619 0.05242 1.48% FabArray::ParallelCopy_nowait() 41 0.03377 0.03982 0.04364 1.24% FillPatchIterator::Initialize 41 0.02883 0.03323 0.03693 1.05% StateData::FillBoundary(geom) 41 0.02954 0.03341 0.03525 1.00% Gravity::interpolate_monopole_grav() 21 0.02775 0.02936 0.03032 0.86% Castro::construct_new_gravity_source() 10 0.02218 0.02291 0.02366 0.67% Castro::computeTemp() 63 0.02081 0.02142 0.02247 0.64% Castro::initialize_do_advance() 10 0.01323 0.01536 0.01692 0.48% Amr::writePlotFile() 2 0.007634 0.01077 0.01341 0.38% FabArray::Saxpy() 20 0.01012 0.01131 0.0132 0.37% MultiFab::contains_nan() 20 0.009802 0.01118 0.01312 0.37% Castro::initialize_advance() 10 0.005178 0.01052 0.01308 0.37% VisMF::Write(FabArray) 2 0.008917 0.01006 0.01291 0.37% Castro::construct_old_gravity_source() 10 0.005736 0.008562 0.01257 0.36% Castro::initMFs() 1 0.00912 0.00992 0.0106 0.30% FabArray::setDomainBndry() 41 0.008959 0.009459 0.01007 0.29% Castro::construct_new_source() 50 0.005254 0.005828 0.006104 0.17% main() 1 0.003936 0.004637 0.005146 0.15% Amr::coarseTimeStep() 10 0.0007391 0.002867 0.004292 0.12% Gravity::get_new_grav_vector() 11 0.002922 0.003319 0.003627 0.10% Gravity::get_old_grav_vector() 10 0.001539 0.002056 0.002393 0.07% AmrLevel::FillPatch() 41 0.0007283 0.001218 0.001387 0.04% Castro::finalize_do_advance() 10 0.0006134 0.001018 0.001154 0.03% Amr::timeStep() 10 0.0001552 0.0002151 0.0003966 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002788 0.00031 0.0003768 0.01% Castro::clean_state() 62 0.0001461 0.0001558 0.0001774 0.01% Castro::do_advance_ctu() 10 0.0001148 0.0001444 0.0001725 0.00% StateDataPhysBCFunct::() 41 8.541e-05 0.0001184 0.0001444 0.00% FillPatchIterator::FillFromLevel0() 41 9.488e-05 0.0001064 0.0001275 0.00% Castro::do_old_sources() 10 5.927e-05 8.973e-05 0.0001218 0.00% FillPatchSingleLevel 41 7.013e-05 8.233e-05 0.0001023 0.00% FabArray::ParallelCopy() 41 8.159e-05 9.137e-05 0.0001013 0.00% Castro::construct_old_source() 50 4.049e-05 6.81e-05 9.057e-05 0.00% Castro::Castro() 1 6.038e-05 7.301e-05 8.504e-05 0.00% Amr::FinalizeInit() 1 3.13e-06 1.349e-05 7.336e-05 0.00% Amr::defBaseLevel() 1 4.262e-05 5.778e-05 6.535e-05 0.00% Castro::do_new_sources() 10 4.491e-05 5.595e-05 6.238e-05 0.00% Castro::subcycle_advance_ctu() 10 3.457e-05 4.628e-05 5.543e-05 0.00% Castro::apply_source_to_state() 20 3.676e-05 4.16e-05 4.946e-05 0.00% Castro::construct_old_gravity() 10 2.973e-05 3.756e-05 4.887e-05 0.00% Castro::advance() 10 3.503e-05 4.18e-05 4.739e-05 0.00% Castro::construct_new_gravity() 10 2.933e-05 3.44e-05 4.217e-05 0.00% Castro::check_for_nan() 20 2.358e-05 2.753e-05 3.255e-05 0.00% Castro::expand_state() 10 2.05e-05 2.369e-05 2.885e-05 0.00% Castro::post_timestep() 10 1.455e-05 1.65e-05 1.914e-05 0.00% Castro::post_init() 1 8.439e-06 9.295e-06 1.064e-05 0.00% Amr::initialInit() 1 1.507e-06 2.741e-06 1.027e-05 0.00% Castro::computeNewDt() 9 8.386e-06 9.065e-06 1.009e-05 0.00% Amr::InitializeInit() 1 2.545e-06 3.833e-06 9.158e-06 0.00% Castro::computeInitialDt() 2 3.068e-06 3.937e-06 4.551e-06 0.00% Amr::init() 1 1.843e-06 2.16e-06 2.513e-06 0.00% Other 261 0.0185 0.02085 0.02236 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.529 3.53 3.53 100.00% Amr::coarseTimeStep() 10 3.324 3.324 3.324 94.17% Amr::timeStep() 10 3.31 3.311 3.314 93.86% Castro::advance() 10 3.294 3.295 3.295 93.33% Castro::subcycle_advance_ctu() 10 3.216 3.222 3.248 92.00% Castro::do_advance_ctu() 10 3.216 3.222 3.248 92.00% Castro::construct_ctu_hydro_source() 10 2.477 2.481 2.485 70.40% Gravity::make_radial_gravity() 21 0.3024 0.3124 0.327 9.26% AmrLevel::FillPatch() 41 0.1881 0.2061 0.2327 6.59% FillPatchIterator::Initialize 41 0.1591 0.1747 0.2109 5.97% Gravity::get_new_grav_vector() 11 0.2066 0.208 0.2099 5.95% Castro::construct_old_gravity() 10 0.1826 0.1896 0.2029 5.75% Gravity::get_old_grav_vector() 10 0.1819 0.1889 0.2022 5.73% Amr::init() 1 0.1915 0.1917 0.1917 5.43% Castro::construct_new_gravity() 10 0.1841 0.1858 0.1871 5.30% check_for_negative_density() 10 0.07292 0.1388 0.1853 5.25% Castro::initialize_do_advance() 10 0.1536 0.1638 0.1776 5.03% Amr::initialInit() 1 0.1765 0.1769 0.177 5.01% FillPatchIterator::FillFromLevel0() 41 0.1189 0.132 0.1676 4.75% FillPatchSingleLevel 41 0.1188 0.1319 0.1675 4.75% Amr::InitializeInit() 1 0.07506 0.1126 0.1507 4.27% Amr::defBaseLevel() 1 0.07506 0.1126 0.1507 4.27% FabArray::ParallelCopy() 41 0.08604 0.09832 0.1378 3.90% Castro::clean_state() 62 0.1157 0.1225 0.1306 3.70% Castro::initData() 1 0.05461 0.09162 0.1286 3.64% Castro::expand_state() 10 0.1002 0.1109 0.1281 3.63% Castro::do_old_sources() 10 0.08661 0.1029 0.1092 3.09% Castro::estTimeStep() 21 0.03483 0.07125 0.1079 3.06% FabArray::ParallelCopy_finish() 41 0.04624 0.05831 0.1039 2.94% Amr::FinalizeInit() 1 0.02634 0.0643 0.1019 2.89% amrex::Copy() 193 0.05786 0.07602 0.0831 2.35% Castro::computeInitialDt() 2 0.002268 0.04034 0.07786 2.21% FabArray::setVal() 143 0.03818 0.06504 0.07771 2.20% Castro::computeTemp() 63 0.06773 0.06974 0.07609 2.16% Castro::initialize_advance() 10 0.04293 0.06898 0.07562 2.14% Castro::do_new_sources() 10 0.05566 0.06089 0.06576 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04645 0.04832 0.05362 1.52% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04801 0.05324 1.51% Castro::normalize_species() 62 0.04158 0.04619 0.05242 1.48% FabArray::ParallelCopy_nowait() 41 0.03387 0.03991 0.04372 1.24% StateDataPhysBCFunct::() 41 0.02962 0.03353 0.03539 1.00% StateData::FillBoundary(geom) 41 0.02954 0.03341 0.03525 1.00% Gravity::interpolate_monopole_grav() 21 0.02775 0.02936 0.03032 0.86% Castro::construct_new_source() 50 0.02755 0.02874 0.02976 0.84% Castro::finalize_do_advance() 10 0.01748 0.02296 0.02854 0.81% Amr::writePlotFile() 2 0.02334 0.02347 0.02393 0.68% Castro::post_init() 1 0.02304 0.02338 0.02367 0.67% Castro::construct_new_gravity_source() 10 0.02218 0.02291 0.02366 0.67% Castro::post_timestep() 10 0.01545 0.01667 0.01851 0.52% Castro::Castro() 1 0.01273 0.0141 0.01495 0.42% Castro::apply_source_to_state() 20 0.01016 0.01135 0.01324 0.38% FabArray::Saxpy() 20 0.01012 0.01131 0.0132 0.37% Castro::check_for_nan() 20 0.00983 0.0112 0.01315 0.37% MultiFab::contains_nan() 20 0.009802 0.01118 0.01312 0.37% VisMF::Write(FabArray) 2 0.008917 0.01006 0.01291 0.37% Castro::construct_old_source() 50 0.005776 0.00863 0.01266 0.36% Castro::construct_old_gravity_source() 10 0.005736 0.008562 0.01257 0.36% Castro::initMFs() 1 0.00912 0.00992 0.0106 0.30% FabArray::setDomainBndry() 41 0.008959 0.009459 0.01007 0.29% Castro::computeNewDt() 9 0.008972 0.008982 0.008992 0.25% Other 261 0.02868 0.03265 0.03526 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8664 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6747 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4560 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 193 KiB 217 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 218 KiB 225 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-14-g650239813dcd) finalized