Initializing AMReX (24.11-17-g2aa22d1758cf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-17-g2aa22d1758cf) initialized Starting run at 21:47:41 UTC on 2024-11-12. Successfully read inputs file ... Castro git describe: 24.11-4-g76380d9c3 AMReX git describe: 24.11-17-g2aa22d175 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.043953266 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348490226 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.358199022 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326668371 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.35949312 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.334824859 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306550554 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30613825 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309655488 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305263228 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30509879 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007630801 seconds Ending run at 21:47:44 UTC on 2024-11-12. Run time = 3.528429768 Run time without initialization = 3.273133752 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.5278 ... 3.5283 ... 3.5285 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2614 2.2927 2.3395 66.30% Gravity::make_radial_gravity() 21 0.2888 0.3003 0.3144 8.91% Castro::initData() 1 0.04721 0.09396 0.1591 4.51% Castro::estTimeStep() 21 0.03235 0.1047 0.159 4.51% check_for_negative_density() 10 0.05274 0.1022 0.1318 3.74% amrex::Copy() 193 0.06222 0.07502 0.08366 2.37% FabArray::ParallelCopy_finish() 41 0.03702 0.05386 0.08051 2.28% FabArray::setVal() 143 0.06004 0.0678 0.07985 2.26% Castro::reset_internal_energy(Fab) 1008 0.04612 0.04782 0.04928 1.40% Castro::normalize_species() 62 0.04197 0.04293 0.04384 1.24% Amr::writePlotFile() 2 0.03704 0.03973 0.04165 1.18% FabArray::ParallelCopy_nowait() 41 0.03417 0.03956 0.0412 1.17% StateData::FillBoundary(geom) 41 0.03075 0.03307 0.0354 1.00% FillPatchIterator::Initialize 41 0.02915 0.03146 0.03385 0.96% Castro::construct_new_gravity_source() 10 0.02367 0.02657 0.03128 0.89% Gravity::interpolate_monopole_grav() 21 0.02819 0.02928 0.02998 0.85% Castro::computeTemp() 63 0.0205 0.02109 0.02173 0.62% Castro::initialize_do_advance() 10 0.01378 0.0169 0.02002 0.57% FabArray::Saxpy() 20 0.01104 0.01193 0.01292 0.37% Castro::initialize_advance() 10 0.005578 0.01002 0.01255 0.36% FabArray::setDomainBndry() 41 0.008595 0.01016 0.01224 0.35% VisMF::Write(FabArray) 2 0.008883 0.00962 0.01206 0.34% Castro::initMFs() 1 0.006321 0.007634 0.01079 0.31% MultiFab::contains_nan() 20 0.009184 0.009965 0.01059 0.30% Castro::construct_old_gravity_source() 10 0.006521 0.008867 0.009615 0.27% Castro::construct_new_source() 50 0.005599 0.006086 0.007953 0.23% Gravity::get_new_grav_vector() 11 0.002856 0.003838 0.005475 0.16% main() 1 0.00332 0.003825 0.00405 0.11% Amr::coarseTimeStep() 10 0.001974 0.002667 0.003441 0.10% Gravity::get_old_grav_vector() 10 0.001598 0.001986 0.002455 0.07% Castro::finalize_do_advance() 10 0.0004828 0.0009739 0.001195 0.03% AmrLevel::FillPatch() 41 0.0007138 0.0009227 0.001151 0.03% Amr::timeStep() 10 0.0001562 0.0002251 0.0004659 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002778 0.0002971 0.0003155 0.01% Castro::clean_state() 62 0.0001511 0.0001801 0.0002102 0.01% Castro::do_advance_ctu() 10 0.0001144 0.0001578 0.0001888 0.01% FillPatchIterator::FillFromLevel0() 41 9.587e-05 0.0001125 0.0001288 0.00% StateDataPhysBCFunct::() 41 9.487e-05 0.0001042 0.0001209 0.00% Castro::do_old_sources() 10 8.33e-05 9.346e-05 0.0001065 0.00% FillPatchSingleLevel 41 7.511e-05 8.042e-05 9.605e-05 0.00% Amr::FinalizeInit() 1 3.433e-06 1.545e-05 9.542e-05 0.00% FabArray::ParallelCopy() 41 8.086e-05 8.881e-05 9.462e-05 0.00% Castro::construct_old_source() 50 5.305e-05 7.205e-05 8.738e-05 0.00% Castro::Castro() 1 5.656e-05 6.66e-05 8.453e-05 0.00% Amr::defBaseLevel() 1 3.806e-05 4.988e-05 7.029e-05 0.00% Castro::do_new_sources() 10 4.79e-05 5.821e-05 6.968e-05 0.00% Castro::subcycle_advance_ctu() 10 3.822e-05 4.726e-05 5.486e-05 0.00% Castro::apply_source_to_state() 20 4.124e-05 4.559e-05 4.947e-05 0.00% Castro::advance() 10 3.817e-05 4.284e-05 4.834e-05 0.00% Castro::construct_new_gravity() 10 3.087e-05 3.563e-05 4.225e-05 0.00% Castro::construct_old_gravity() 10 3.042e-05 3.568e-05 3.944e-05 0.00% Castro::check_for_nan() 20 2.5e-05 2.814e-05 3.558e-05 0.00% Castro::expand_state() 10 2.029e-05 2.424e-05 2.859e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.001e-06 1.416e-05 2.737e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.738e-05 2.334e-05 0.00% Castro::computeNewDt() 9 8.067e-06 9.499e-06 1.234e-05 0.00% Castro::post_init() 1 8.099e-06 9.625e-06 1.145e-05 0.00% Amr::InitializeInit() 1 2.706e-06 3.608e-06 6.995e-06 0.00% Castro::computeInitialDt() 2 3.589e-06 4.032e-06 5.197e-06 0.00% Amr::init() 1 1.781e-06 2.241e-06 2.858e-06 0.00% Amr::initialInit() 1 1.483e-06 1.777e-06 2.109e-06 0.00% Other 260 0.01561 0.01897 0.02292 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.528 3.528 100.00% Amr::coarseTimeStep() 10 3.262 3.262 3.262 92.43% Amr::timeStep() 10 3.248 3.249 3.249 92.09% Castro::advance() 10 3.232 3.232 3.233 91.64% Castro::subcycle_advance_ctu() 10 3.15 3.159 3.166 89.73% Castro::do_advance_ctu() 10 3.15 3.158 3.166 89.73% Castro::construct_ctu_hydro_source() 10 2.414 2.417 2.421 68.61% Gravity::make_radial_gravity() 21 0.3044 0.3157 0.3268 9.26% Amr::init() 1 0.2547 0.2549 0.2549 7.23% Gravity::get_new_grav_vector() 11 0.2103 0.2133 0.2156 6.11% AmrLevel::FillPatch() 41 0.1813 0.1991 0.2123 6.02% Amr::initialInit() 1 0.2101 0.2106 0.2108 5.97% Castro::construct_old_gravity() 10 0.1806 0.1863 0.1942 5.50% Gravity::get_old_grav_vector() 10 0.1799 0.1856 0.1931 5.47% Castro::construct_new_gravity() 10 0.1884 0.1909 0.1928 5.46% FillPatchIterator::Initialize 41 0.1522 0.1686 0.1854 5.25% Amr::InitializeInit() 1 0.06631 0.1154 0.1844 5.23% Amr::defBaseLevel() 1 0.0663 0.1154 0.1844 5.23% Castro::initialize_do_advance() 10 0.1572 0.1674 0.1762 4.99% Castro::initData() 1 0.05079 0.09762 0.1627 4.61% Castro::estTimeStep() 21 0.03235 0.1047 0.159 4.51% FillPatchIterator::FillFromLevel0() 41 0.1132 0.127 0.1466 4.16% FillPatchSingleLevel 41 0.1131 0.1269 0.1465 4.15% Amr::FinalizeInit() 1 0.02568 0.09521 0.1444 4.09% check_for_negative_density() 10 0.05274 0.1022 0.1318 3.74% Castro::expand_state() 10 0.1023 0.1142 0.1234 3.50% Castro::computeInitialDt() 2 0.002217 0.07129 0.1204 3.41% Castro::clean_state() 62 0.1142 0.1176 0.1196 3.39% FabArray::ParallelCopy() 41 0.07756 0.0936 0.1149 3.26% Castro::do_old_sources() 10 0.08546 0.08984 0.09302 2.64% amrex::Copy() 193 0.06222 0.07502 0.08366 2.37% FabArray::ParallelCopy_finish() 41 0.03702 0.05386 0.08051 2.28% FabArray::setVal() 143 0.06004 0.0678 0.07985 2.26% Castro::initialize_advance() 10 0.06213 0.07014 0.07897 2.24% Castro::do_new_sources() 10 0.0607 0.06671 0.07286 2.06% Castro::computeTemp() 63 0.06712 0.06921 0.07109 2.01% Amr::writePlotFile() 2 0.05188 0.05202 0.05247 1.49% Castro::reset_internal_energy(MultiFab) 63 0.0464 0.04812 0.04956 1.40% Castro::reset_internal_energy(Fab) 1008 0.04612 0.04782 0.04928 1.40% Castro::normalize_species() 62 0.04197 0.04293 0.04384 1.24% FabArray::ParallelCopy_nowait() 41 0.03427 0.03965 0.04129 1.17% Castro::construct_new_source() 50 0.02946 0.03265 0.03923 1.11% StateDataPhysBCFunct::() 41 0.03085 0.03317 0.0355 1.01% StateData::FillBoundary(geom) 41 0.03075 0.03307 0.0354 1.00% Castro::finalize_do_advance() 10 0.01884 0.02533 0.0315 0.89% Castro::construct_new_gravity_source() 10 0.02367 0.02657 0.03128 0.89% Gravity::interpolate_monopole_grav() 21 0.02819 0.02928 0.02998 0.85% Castro::post_init() 1 0.02318 0.02348 0.02358 0.67% Castro::post_timestep() 10 0.0155 0.01597 0.01651 0.47% Castro::Castro() 1 0.009833 0.01109 0.01429 0.40% Castro::apply_source_to_state() 20 0.01109 0.01198 0.01297 0.37% FabArray::Saxpy() 20 0.01104 0.01193 0.01292 0.37% FabArray::setDomainBndry() 41 0.008595 0.01016 0.01224 0.35% VisMF::Write(FabArray) 2 0.008883 0.00962 0.01206 0.34% Castro::initMFs() 1 0.006321 0.007634 0.01079 0.31% Castro::check_for_nan() 20 0.00921 0.009993 0.01061 0.30% MultiFab::contains_nan() 20 0.009184 0.009965 0.01059 0.30% Castro::construct_old_source() 50 0.006574 0.008939 0.009702 0.27% Castro::construct_old_gravity_source() 10 0.006521 0.008867 0.009615 0.27% Castro::computeNewDt() 9 0.009046 0.009054 0.009066 0.26% AmrLevel::AmrLevel(dm) 1 0.005274 0.006338 0.008444 0.24% Other 260 0.02017 0.02459 0.02955 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8670 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6611 KiB 6620 KiB 6625 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4461 KiB 4472 KiB 4484 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 193 KiB 214 KiB 230 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2743 KiB 2747 KiB 2749 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 220 KiB 228 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 33 KiB 41 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-17-g2aa22d1758cf) finalized