Initializing AMReX (24.11-16-gd6c9caa0c6dd)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-16-gd6c9caa0c6dd) initialized Starting run at 06:22:25 UTC on 2024-11-12. Successfully read inputs file ... Castro git describe: 24.11-1-gb38a018a1 AMReX git describe: 24.11-16-gd6c9caa0c Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014357379 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352401617 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.355674188 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.336384704 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.35637568 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.340668045 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308602797 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308869726 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309470609 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310652237 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.310937411 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007883812 seconds Ending run at 06:22:29 UTC on 2024-11-12. Run time = 3.536598455 Run time without initialization = 3.302316948 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5365 ... 3.5366 ... 3.5367 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2467 2.3018 2.3597 66.72% Gravity::make_radial_gravity() 21 0.2934 0.303 0.3171 8.97% Castro::initData() 1 0.04719 0.09528 0.1661 4.70% Castro::estTimeStep() 21 0.02251 0.11 0.1649 4.66% check_for_negative_density() 10 0.04413 0.1054 0.1597 4.52% amrex::Copy() 193 0.0629 0.07672 0.08552 2.42% FabArray::ParallelCopy_finish() 41 0.04066 0.05948 0.08542 2.42% FabArray::setVal() 143 0.06036 0.06786 0.07776 2.20% Castro::reset_internal_energy(Fab) 1008 0.04399 0.04694 0.04886 1.38% Castro::normalize_species() 62 0.04281 0.0445 0.04683 1.32% FabArray::ParallelCopy_nowait() 41 0.03455 0.04022 0.0415 1.17% FillPatchIterator::Initialize 41 0.03002 0.03322 0.03665 1.04% StateData::FillBoundary(geom) 41 0.02982 0.03236 0.03507 0.99% Gravity::interpolate_monopole_grav() 21 0.02791 0.03016 0.03216 0.91% Castro::construct_new_gravity_source() 10 0.02181 0.02572 0.02915 0.82% Castro::computeTemp() 63 0.01972 0.0212 0.02176 0.62% Castro::initialize_do_advance() 10 0.01395 0.0179 0.02078 0.59% FabArray::Saxpy() 20 0.009785 0.01221 0.01329 0.38% Castro::initialize_advance() 10 0.005492 0.009966 0.01278 0.36% VisMF::Write(FabArray) 2 0.009186 0.009906 0.01257 0.36% FabArray::setDomainBndry() 41 0.006566 0.00978 0.01217 0.34% MultiFab::contains_nan() 20 0.009537 0.01065 0.0119 0.34% Amr::writePlotFile() 2 0.007239 0.009897 0.01134 0.32% Castro::initMFs() 1 0.006331 0.007525 0.01023 0.29% Castro::construct_old_gravity_source() 10 0.006528 0.008841 0.009544 0.27% Amr::coarseTimeStep() 10 0.002176 0.006939 0.008674 0.25% Castro::construct_new_source() 50 0.005517 0.005883 0.006029 0.17% main() 1 0.003794 0.003895 0.004026 0.11% Gravity::get_new_grav_vector() 11 0.002806 0.003443 0.00401 0.11% Gravity::get_old_grav_vector() 10 0.001531 0.002112 0.002526 0.07% Castro::finalize_do_advance() 10 0.0005419 0.0009355 0.001053 0.03% AmrLevel::FillPatch() 41 0.0006876 0.0008466 0.001019 0.03% Amr::timeStep() 10 0.0001608 0.0002097 0.0004516 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002741 0.0002844 0.0003025 0.01% Castro::clean_state() 62 0.0001317 0.0001506 0.0001635 0.00% Castro::do_advance_ctu() 10 0.0001177 0.0001364 0.0001622 0.00% FillPatchIterator::FillFromLevel0() 41 9.717e-05 0.0001098 0.0001373 0.00% StateDataPhysBCFunct::() 41 9.605e-05 0.0001047 0.0001172 0.00% Castro::construct_old_source() 50 5.045e-05 7.109e-05 0.0001048 0.00% FabArray::ParallelCopy() 41 8.479e-05 9.314e-05 0.0001022 0.00% Castro::do_old_sources() 10 6.865e-05 8.164e-05 0.0001012 0.00% Amr::FinalizeInit() 1 3.49e-06 1.623e-05 9.623e-05 0.00% Castro::Castro() 1 5.177e-05 6.958e-05 8.82e-05 0.00% FillPatchSingleLevel 41 7.059e-05 7.768e-05 8.395e-05 0.00% Amr::defBaseLevel() 1 4.576e-05 5.413e-05 6.743e-05 0.00% Castro::do_new_sources() 10 4.97e-05 5.329e-05 5.974e-05 0.00% Castro::subcycle_advance_ctu() 10 3.943e-05 4.916e-05 5.961e-05 0.00% Castro::apply_source_to_state() 20 3.614e-05 4.252e-05 5.337e-05 0.00% Castro::advance() 10 3.896e-05 4.192e-05 4.94e-05 0.00% Castro::construct_old_gravity() 10 3.096e-05 3.35e-05 3.675e-05 0.00% Castro::construct_new_gravity() 10 2.758e-05 3.134e-05 3.471e-05 0.00% Castro::post_init() 1 9.137e-06 1.286e-05 3.208e-05 0.00% Castro::expand_state() 10 2.327e-05 2.598e-05 2.923e-05 0.00% Castro::check_for_nan() 20 2.339e-05 2.523e-05 2.748e-05 0.00% Castro::post_timestep() 10 1.632e-05 2.02e-05 2.349e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.032e-06 1.263e-05 2.168e-05 0.00% Castro::computeNewDt() 9 7.669e-06 1.053e-05 1.652e-05 0.00% Amr::InitializeInit() 1 2.621e-06 4.097e-06 8.926e-06 0.00% Castro::computeInitialDt() 2 3.126e-06 3.863e-06 4.678e-06 0.00% Amr::init() 1 2.17e-06 2.53e-06 3.318e-06 0.00% Amr::initialInit() 1 1.488e-06 1.893e-06 2.36e-06 0.00% Other 260 0.01733 0.02019 0.02387 0.68% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.537 3.537 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 93.04% Amr::timeStep() 10 3.272 3.273 3.278 92.69% Castro::advance() 10 3.255 3.256 3.258 92.12% Castro::subcycle_advance_ctu() 10 3.173 3.183 3.19 90.20% Castro::do_advance_ctu() 10 3.173 3.183 3.19 90.20% Castro::construct_ctu_hydro_source() 10 2.425 2.429 2.432 68.76% Gravity::make_radial_gravity() 21 0.3091 0.3189 0.3299 9.33% Amr::init() 1 0.2335 0.2338 0.2339 6.61% Gravity::get_new_grav_vector() 11 0.216 0.2176 0.2199 6.22% Amr::initialInit() 1 0.2189 0.2194 0.2196 6.21% AmrLevel::FillPatch() 41 0.1943 0.2071 0.2164 6.12% Castro::construct_old_gravity() 10 0.1834 0.1897 0.1991 5.63% Gravity::get_old_grav_vector() 10 0.1822 0.1888 0.198 5.60% Castro::construct_new_gravity() 10 0.1934 0.1951 0.1974 5.58% Amr::InitializeInit() 1 0.06777 0.1171 0.193 5.46% Amr::defBaseLevel() 1 0.06776 0.1171 0.193 5.46% FillPatchIterator::Initialize 41 0.1641 0.1755 0.1869 5.28% Castro::initialize_do_advance() 10 0.1657 0.1714 0.1773 5.01% Castro::initData() 1 0.05077 0.09928 0.1702 4.81% Castro::estTimeStep() 21 0.02251 0.11 0.1649 4.66% check_for_negative_density() 10 0.04413 0.1054 0.1597 4.52% Amr::FinalizeInit() 1 0.02641 0.1023 0.1519 4.29% FillPatchIterator::FillFromLevel0() 41 0.1177 0.1325 0.1503 4.25% FillPatchSingleLevel 41 0.1176 0.1324 0.1502 4.25% Castro::computeInitialDt() 2 0.002417 0.07837 0.1278 3.61% Castro::clean_state() 62 0.1144 0.1195 0.1241 3.51% Castro::expand_state() 10 0.1102 0.1169 0.1233 3.49% FabArray::ParallelCopy() 41 0.08235 0.09989 0.1202 3.40% Castro::do_old_sources() 10 0.08689 0.09231 0.09469 2.68% amrex::Copy() 193 0.0629 0.07672 0.08552 2.42% FabArray::ParallelCopy_finish() 41 0.04066 0.05948 0.08542 2.42% Castro::initialize_advance() 10 0.06281 0.06991 0.07934 2.24% FabArray::setVal() 143 0.06036 0.06786 0.07776 2.20% Castro::do_new_sources() 10 0.05669 0.06675 0.07633 2.16% Castro::computeTemp() 63 0.06399 0.06843 0.07092 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04426 0.04723 0.04916 1.39% Castro::reset_internal_energy(Fab) 1008 0.04399 0.04694 0.04886 1.38% Castro::normalize_species() 62 0.04281 0.0445 0.04683 1.32% FabArray::ParallelCopy_nowait() 41 0.03466 0.04032 0.04159 1.18% StateDataPhysBCFunct::() 41 0.02992 0.03247 0.03517 0.99% StateData::FillBoundary(geom) 41 0.02982 0.03236 0.03507 0.99% Castro::construct_new_source() 50 0.02733 0.03161 0.03503 0.99% Castro::finalize_do_advance() 10 0.01214 0.0236 0.03427 0.97% Gravity::interpolate_monopole_grav() 21 0.02791 0.03016 0.03216 0.91% Castro::construct_new_gravity_source() 10 0.02181 0.02572 0.02915 0.82% Castro::post_init() 1 0.02313 0.02345 0.02364 0.67% Amr::writePlotFile() 2 0.02225 0.02241 0.02279 0.64% Castro::post_timestep() 10 0.01537 0.01687 0.02008 0.57% Castro::Castro() 1 0.009663 0.01115 0.01425 0.40% Castro::apply_source_to_state() 20 0.009822 0.01225 0.01334 0.38% FabArray::Saxpy() 20 0.009785 0.01221 0.01329 0.38% VisMF::Write(FabArray) 2 0.009186 0.009906 0.01257 0.36% FabArray::setDomainBndry() 41 0.006566 0.00978 0.01217 0.34% Castro::check_for_nan() 20 0.009561 0.01068 0.01193 0.34% MultiFab::contains_nan() 20 0.009537 0.01065 0.0119 0.34% Castro::initMFs() 1 0.006331 0.007525 0.01023 0.29% Castro::construct_old_source() 50 0.006578 0.008913 0.009649 0.27% Castro::construct_old_gravity_source() 10 0.006528 0.008841 0.009544 0.27% Castro::computeNewDt() 9 0.008946 0.008962 0.008976 0.25% AmrLevel::AmrLevel(dm) 1 0.005326 0.006262 0.008209 0.23% Other 260 0.022 0.02597 0.03118 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 38 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8671 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6659 KiB 6665 KiB 6668 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4483 KiB 4496 KiB 4507 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 220 KiB 231 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2759 KiB 2762 KiB 2763 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 229 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 43 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-16-gd6c9caa0c6dd) finalized