Initializing AMReX (24.11-17-g2aa22d1758cf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-17-g2aa22d1758cf) initialized Starting run at 14:21:36 UTC on 2024-11-13. Successfully read inputs file ... Castro git describe: 24.11-5-g942be8a1f AMReX git describe: 24.11-17-g2aa22d175 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.071390737 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350838332 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331831449 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326667252 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.324418983 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.382713921 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308304705 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301996208 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302859268 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308326006 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307055582 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007894973 seconds Ending run at 14:21:40 UTC on 2024-11-13. Run time = 3.49617791 Run time without initialization = 3.257437226 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4955 ... 3.4961 ... 3.4962 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2139 2.2881 2.3376 66.86% Gravity::make_radial_gravity() 21 0.2868 0.3045 0.3249 9.29% check_for_negative_density() 10 0.01936 0.07179 0.144 4.12% FabArray::ParallelCopy_finish() 41 0.05441 0.07415 0.1224 3.50% Castro::initData() 1 0.04796 0.08662 0.1204 3.45% Castro::estTimeStep() 21 0.02239 0.05947 0.1018 2.91% amrex::Copy() 193 0.06481 0.08179 0.09396 2.69% FabArray::setVal() 143 0.04948 0.06537 0.07138 2.04% VisMF::Write(FabArray) 2 0.009044 0.01689 0.06984 2.00% Amr::writePlotFile() 2 0.007704 0.05967 0.06745 1.93% FabArray::ParallelCopy_nowait() 41 0.03497 0.04147 0.04851 1.39% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04652 0.04775 1.37% Castro::normalize_species() 62 0.04148 0.04218 0.04375 1.25% FillPatchIterator::Initialize 41 0.02729 0.03418 0.03945 1.13% StateData::FillBoundary(geom) 41 0.03027 0.03274 0.03501 1.00% Gravity::interpolate_monopole_grav() 21 0.0273 0.02901 0.03006 0.86% Castro::construct_new_gravity_source() 10 0.02366 0.02415 0.0251 0.72% Castro::computeTemp() 63 0.02009 0.02053 0.02089 0.60% Castro::initialize_do_advance() 10 0.01168 0.0161 0.01791 0.51% MultiFab::contains_nan() 20 0.01023 0.01137 0.01396 0.40% FabArray::setDomainBndry() 41 0.00727 0.0107 0.01357 0.39% FabArray::Saxpy() 20 0.0107 0.01203 0.01322 0.38% Castro::initialize_advance() 10 0.005344 0.0104 0.01305 0.37% Castro::construct_old_gravity_source() 10 0.006751 0.008753 0.009457 0.27% Castro::initMFs() 1 0.006386 0.007145 0.007838 0.22% Castro::construct_new_source() 50 0.005472 0.006066 0.006319 0.18% main() 1 0.003248 0.003774 0.003943 0.11% Gravity::get_new_grav_vector() 11 0.002689 0.003464 0.003758 0.11% Gravity::get_old_grav_vector() 10 0.001433 0.002034 0.002409 0.07% Amr::coarseTimeStep() 10 0.001148 0.001587 0.002135 0.06% AmrLevel::FillPatch() 41 0.0008266 0.001031 0.001216 0.03% Castro::finalize_do_advance() 10 0.0005646 0.0009364 0.001111 0.03% Amr::timeStep() 10 0.0001681 0.0002183 0.000397 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002797 0.0002916 0.0003094 0.01% Castro::clean_state() 62 0.0001431 0.0001632 0.0001873 0.01% Castro::do_advance_ctu() 10 0.0001438 0.0001544 0.0001854 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001059 0.0001275 0.0001812 0.01% StateDataPhysBCFunct::() 41 0.0001036 0.0001242 0.0001617 0.00% FabArray::ParallelCopy() 41 7.988e-05 9.468e-05 0.0001071 0.00% Castro::do_old_sources() 10 8.514e-05 9.33e-05 0.0001033 0.00% FillPatchSingleLevel 41 7.355e-05 8.396e-05 9.74e-05 0.00% Amr::FinalizeInit() 1 3.437e-06 1.486e-05 8.891e-05 0.00% Castro::construct_old_source() 50 5.482e-05 6.831e-05 8.392e-05 0.00% Castro::Castro() 1 6.262e-05 7.124e-05 7.828e-05 0.00% Castro::do_new_sources() 10 5.26e-05 5.98e-05 6.657e-05 0.00% Castro::subcycle_advance_ctu() 10 4.501e-05 5.349e-05 6.509e-05 0.00% Castro::advance() 10 3.551e-05 4.553e-05 5.343e-05 0.00% Castro::apply_source_to_state() 20 4.417e-05 4.674e-05 5.203e-05 0.00% Amr::defBaseLevel() 1 3.363e-05 4.14e-05 4.693e-05 0.00% Castro::expand_state() 10 2.351e-05 2.827e-05 4.266e-05 0.00% Castro::construct_old_gravity() 10 3.261e-05 3.808e-05 4.145e-05 0.00% Castro::construct_new_gravity() 10 2.739e-05 3.413e-05 3.918e-05 0.00% Castro::check_for_nan() 20 2.298e-05 2.651e-05 3.234e-05 0.00% Castro::post_init() 1 8.986e-06 1.435e-05 2.637e-05 0.00% Amr::InitializeInit() 1 2.62e-06 4.911e-06 1.835e-05 0.00% Castro::post_timestep() 10 1.481e-05 1.612e-05 1.822e-05 0.00% Castro::computeNewDt() 9 7.962e-06 9.107e-06 1.036e-05 0.00% Castro::computeInitialDt() 2 3.417e-06 3.804e-06 4.757e-06 0.00% Amr::init() 1 1.757e-06 2.423e-06 3.184e-06 0.00% Amr::initialInit() 1 1.663e-06 1.899e-06 2.261e-06 0.00% Other 261 0.01627 0.01948 0.02087 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.496 3.496 3.496 100.00% Amr::coarseTimeStep() 10 3.246 3.246 3.246 92.83% Amr::timeStep() 10 3.234 3.234 3.234 92.51% Castro::advance() 10 3.217 3.218 3.218 92.04% Castro::subcycle_advance_ctu() 10 3.14 3.147 3.164 90.50% Castro::do_advance_ctu() 10 3.14 3.147 3.164 90.49% Castro::construct_ctu_hydro_source() 10 2.378 2.381 2.384 68.20% Gravity::make_radial_gravity() 21 0.3037 0.3208 0.3379 9.66% AmrLevel::FillPatch() 41 0.2097 0.2278 0.2503 7.16% Amr::init() 1 0.2382 0.2384 0.2384 6.82% FillPatchIterator::Initialize 41 0.1794 0.1938 0.2228 6.37% Castro::construct_old_gravity() 10 0.184 0.2021 0.215 6.15% Gravity::get_old_grav_vector() 10 0.183 0.2013 0.2144 6.13% Gravity::get_new_grav_vector() 11 0.2049 0.2064 0.2075 5.94% FillPatchIterator::FillFromLevel0() 41 0.1304 0.1489 0.1883 5.39% FillPatchSingleLevel 41 0.1302 0.1488 0.1881 5.38% Castro::initialize_do_advance() 10 0.1632 0.173 0.186 5.32% Castro::construct_new_gravity() 10 0.1831 0.1839 0.1844 5.28% Amr::initialInit() 1 0.1666 0.1671 0.1673 4.78% FabArray::ParallelCopy() 41 0.09499 0.1158 0.1576 4.51% check_for_negative_density() 10 0.01936 0.07179 0.144 4.12% Amr::InitializeInit() 1 0.06693 0.1073 0.1408 4.03% Amr::defBaseLevel() 1 0.06692 0.1073 0.1408 4.03% Castro::expand_state() 10 0.1098 0.1199 0.1299 3.72% Castro::initData() 1 0.05172 0.0904 0.1242 3.55% FabArray::ParallelCopy_finish() 41 0.05441 0.07415 0.1224 3.50% Castro::do_old_sources() 10 0.09649 0.1108 0.1199 3.43% Castro::clean_state() 62 0.1142 0.116 0.1174 3.36% Castro::estTimeStep() 21 0.02239 0.05947 0.1018 2.91% Amr::FinalizeInit() 1 0.02624 0.05978 0.1003 2.87% amrex::Copy() 193 0.06481 0.08179 0.09396 2.69% Amr::writePlotFile() 2 0.07909 0.0792 0.07954 2.28% Castro::computeInitialDt() 2 0.002176 0.03563 0.07608 2.18% Castro::initialize_advance() 10 0.05017 0.06735 0.0748 2.14% FabArray::setVal() 143 0.04948 0.06537 0.07138 2.04% VisMF::Write(FabArray) 2 0.009044 0.01689 0.06984 2.00% Castro::computeTemp() 63 0.06572 0.06735 0.06885 1.97% Castro::do_new_sources() 10 0.05882 0.06299 0.06654 1.90% FabArray::ParallelCopy_nowait() 41 0.03507 0.04157 0.04859 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04563 0.04682 0.04804 1.37% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04652 0.04775 1.37% Castro::normalize_species() 62 0.04148 0.04218 0.04375 1.25% StateDataPhysBCFunct::() 41 0.03041 0.03286 0.03517 1.01% StateData::FillBoundary(geom) 41 0.03027 0.03274 0.03501 1.00% Castro::construct_new_source() 50 0.02943 0.03022 0.03137 0.90% Gravity::interpolate_monopole_grav() 21 0.0273 0.02901 0.03006 0.86% Castro::construct_new_gravity_source() 10 0.02366 0.02415 0.0251 0.72% Castro::post_init() 1 0.02316 0.02364 0.02383 0.68% Castro::finalize_do_advance() 10 0.01171 0.01583 0.02007 0.57% Castro::post_timestep() 10 0.01557 0.01606 0.01638 0.47% Castro::check_for_nan() 20 0.01025 0.0114 0.014 0.40% MultiFab::contains_nan() 20 0.01023 0.01137 0.01396 0.40% FabArray::setDomainBndry() 41 0.00727 0.0107 0.01357 0.39% Castro::apply_source_to_state() 20 0.01074 0.01208 0.01327 0.38% FabArray::Saxpy() 20 0.0107 0.01203 0.01322 0.38% Castro::Castro() 1 0.009577 0.01087 0.01191 0.34% Castro::construct_old_source() 50 0.006806 0.008821 0.009538 0.27% Castro::construct_old_gravity_source() 10 0.006751 0.008753 0.009457 0.27% Castro::computeNewDt() 9 0.008942 0.00896 0.008977 0.26% Castro::initMFs() 1 0.006386 0.007145 0.007838 0.22% Other 261 0.02621 0.03033 0.03235 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8673 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6646 KiB 6649 KiB 6651 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4487 KiB 4497 KiB 4517 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 223 KiB 242 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 23 KiB 77 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2757 KiB 2760 KiB 2761 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 234 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 48 KiB 68 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-17-g2aa22d1758cf) finalized