Initializing AMReX (24.11-17-g2aa22d1758cf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-17-g2aa22d1758cf) initialized Starting run at 19:19:06 UTC on 2024-11-13. Successfully read inputs file ... Castro git describe: 24.11-4-gd33da1654 AMReX git describe: 24.11-17-g2aa22d175 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015117121 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349881938 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34476304 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335409911 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.350566822 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362939775 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311040885 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310602707 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.311014208 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.311297254 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31123911 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007525185 seconds Ending run at 19:19:09 UTC on 2024-11-13. Run time = 3.529171288 Run time without initialization = 3.311298387 Average number of zones advanced per microsecond: 0.792 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5282 ... 3.5287 ... 3.5292 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2312 2.3057 2.3589 66.84% Gravity::make_radial_gravity() 21 0.2982 0.3137 0.3354 9.50% check_for_negative_density() 10 0.03257 0.08666 0.164 4.65% Castro::initData() 1 0.04934 0.08978 0.1236 3.50% Castro::estTimeStep() 21 0.0365 0.07016 0.1136 3.22% amrex::Copy() 193 0.06864 0.08288 0.09791 2.77% FabArray::setVal() 143 0.0674 0.07145 0.07486 2.12% FabArray::ParallelCopy_finish() 41 0.04822 0.05728 0.06915 1.96% Castro::reset_internal_energy(Fab) 1008 0.04349 0.04757 0.05189 1.47% Castro::normalize_species() 62 0.0421 0.04459 0.05185 1.47% FabArray::ParallelCopy_nowait() 41 0.03538 0.04211 0.05011 1.42% Amr::writePlotFile() 2 0.0379 0.04003 0.04045 1.15% FillPatchIterator::Initialize 41 0.02963 0.03414 0.03705 1.05% StateData::FillBoundary(geom) 41 0.03011 0.03263 0.03513 1.00% Castro::construct_new_gravity_source() 10 0.0239 0.02566 0.03251 0.92% Gravity::interpolate_monopole_grav() 21 0.02731 0.0293 0.03048 0.86% Castro::computeTemp() 63 0.01987 0.02121 0.02235 0.63% Castro::initialize_do_advance() 10 0.01375 0.01755 0.01943 0.55% Castro::initialize_advance() 10 0.01077 0.01224 0.0143 0.41% MultiFab::contains_nan() 20 0.01045 0.01197 0.01401 0.40% FabArray::Saxpy() 20 0.01129 0.01236 0.01335 0.38% FabArray::setDomainBndry() 41 0.007524 0.01045 0.01285 0.36% VisMF::Write(FabArray) 2 0.009344 0.009826 0.01224 0.35% Castro::construct_old_gravity_source() 10 0.006518 0.009008 0.009934 0.28% Castro::construct_new_source() 50 0.005857 0.006571 0.008631 0.24% Castro::initMFs() 1 0.006488 0.007053 0.008398 0.24% Castro::enforce_min_density() 62 0.007238 0.007397 0.007599 0.22% Amr::coarseTimeStep() 10 0.002102 0.003599 0.005272 0.15% main() 1 0.003502 0.004001 0.004512 0.13% Gravity::get_new_grav_vector() 11 0.002928 0.00345 0.003779 0.11% Gravity::get_old_grav_vector() 10 0.001707 0.002183 0.003168 0.09% Castro::finalize_do_advance() 10 0.0005737 0.000958 0.001128 0.03% AmrLevel::FillPatch() 41 0.0008043 0.0008721 0.0009296 0.03% Amr::timeStep() 10 0.0001669 0.000228 0.0004243 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002738 0.000293 0.000388 0.01% Castro::do_advance_ctu() 10 0.0001508 0.0001666 0.0002077 0.01% Castro::clean_state() 62 0.0001609 0.0001709 0.0001871 0.01% StateDataPhysBCFunct::() 41 9.559e-05 0.0001079 0.0001458 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001072 0.0001166 0.0001295 0.00% FabArray::ParallelCopy() 41 8.107e-05 9.493e-05 0.0001086 0.00% Castro::do_old_sources() 10 8.609e-05 9.57e-05 0.0001061 0.00% Castro::Castro() 1 5.367e-05 7.887e-05 0.0001004 0.00% FillPatchSingleLevel 41 7.641e-05 8.437e-05 9.319e-05 0.00% Amr::FinalizeInit() 1 3.801e-06 1.438e-05 8.186e-05 0.00% Castro::construct_old_source() 50 4.939e-05 7.209e-05 7.956e-05 0.00% Castro::do_new_sources() 10 5.651e-05 6.325e-05 7.03e-05 0.00% Amr::defBaseLevel() 1 5.078e-05 5.733e-05 6.664e-05 0.00% Castro::apply_source_to_state() 20 4.13e-05 5.058e-05 6.425e-05 0.00% Castro::subcycle_advance_ctu() 10 4.181e-05 5.408e-05 6.367e-05 0.00% Castro::construct_old_gravity() 10 3.656e-05 4.219e-05 5.764e-05 0.00% Castro::advance() 10 3.946e-05 4.523e-05 5.245e-05 0.00% Castro::construct_new_gravity() 10 3.339e-05 3.773e-05 5.155e-05 0.00% Castro::check_for_nan() 20 2.449e-05 2.836e-05 3.571e-05 0.00% Castro::expand_state() 10 2.157e-05 2.648e-05 3.172e-05 0.00% Castro::post_timestep() 10 1.479e-05 1.959e-05 2.615e-05 0.00% Castro::post_init() 1 9.675e-06 1.265e-05 1.789e-05 0.00% Castro::computeNewDt() 9 8.383e-06 9.26e-06 1.004e-05 0.00% Amr::InitializeInit() 1 2.73e-06 3.85e-06 6.316e-06 0.00% Castro::computeInitialDt() 2 4.169e-06 4.711e-06 5.451e-06 0.00% Amr::init() 1 1.776e-06 2.428e-06 3.15e-06 0.00% Amr::initialInit() 1 1.434e-06 1.973e-06 2.797e-06 0.00% Other 199 0.01058 0.01239 0.01392 0.39% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.529 3.529 100.00% Amr::coarseTimeStep() 10 3.299 3.299 3.299 93.49% Amr::timeStep() 10 3.284 3.285 3.287 93.13% Castro::advance() 10 3.267 3.268 3.269 92.64% Castro::subcycle_advance_ctu() 10 3.185 3.19 3.194 90.51% Castro::do_advance_ctu() 10 3.185 3.19 3.194 90.50% Castro::construct_ctu_hydro_source() 10 2.413 2.414 2.417 68.48% Gravity::make_radial_gravity() 21 0.313 0.3294 0.3481 9.86% AmrLevel::FillPatch() 41 0.1976 0.2124 0.224 6.35% Castro::construct_old_gravity() 10 0.1876 0.2036 0.2218 6.29% Gravity::get_old_grav_vector() 10 0.1866 0.2026 0.2206 6.25% Amr::init() 1 0.2172 0.2174 0.2175 6.16% Gravity::get_new_grav_vector() 11 0.2103 0.2124 0.2141 6.07% Castro::initialize_do_advance() 10 0.1559 0.1783 0.197 5.58% Castro::construct_new_gravity() 10 0.1874 0.1886 0.1897 5.38% FillPatchIterator::Initialize 41 0.1677 0.1771 0.1835 5.20% Amr::initialInit() 1 0.1717 0.1722 0.1723 4.88% check_for_negative_density() 10 0.03257 0.08666 0.164 4.65% Amr::InitializeInit() 1 0.06961 0.111 0.1445 4.09% Amr::defBaseLevel() 1 0.06961 0.111 0.1445 4.09% FillPatchIterator::FillFromLevel0() 41 0.13 0.1325 0.1378 3.90% FillPatchSingleLevel 41 0.1299 0.1324 0.1377 3.90% Castro::expand_state() 10 0.1059 0.1223 0.1343 3.80% Castro::initData() 1 0.05335 0.09395 0.1278 3.62% Castro::clean_state() 62 0.116 0.1203 0.1262 3.58% Castro::estTimeStep() 21 0.0365 0.07016 0.1136 3.22% FabArray::ParallelCopy() 41 0.09472 0.09958 0.1047 2.97% Amr::FinalizeInit() 1 0.02785 0.06117 0.1027 2.91% Castro::do_old_sources() 10 0.0947 0.09692 0.1005 2.85% amrex::Copy() 193 0.06864 0.08288 0.09791 2.77% Castro::initialize_advance() 10 0.07014 0.07432 0.07954 2.25% Castro::do_new_sources() 10 0.06328 0.06675 0.07826 2.22% Castro::computeInitialDt() 2 0.002488 0.03592 0.07737 2.19% FabArray::setVal() 143 0.0674 0.07145 0.07486 2.12% Castro::computeTemp() 63 0.06364 0.06907 0.07463 2.11% FabArray::ParallelCopy_finish() 41 0.04822 0.05728 0.06915 1.96% Amr::writePlotFile() 2 0.0528 0.05291 0.05322 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04377 0.04786 0.05228 1.48% Castro::reset_internal_energy(Fab) 1008 0.04349 0.04757 0.05189 1.47% Castro::normalize_species() 62 0.0421 0.04459 0.05185 1.47% FabArray::ParallelCopy_nowait() 41 0.03548 0.0422 0.05023 1.42% Castro::construct_new_source() 50 0.02976 0.03223 0.04114 1.17% StateDataPhysBCFunct::() 41 0.03022 0.03274 0.03523 1.00% StateData::FillBoundary(geom) 41 0.03011 0.03263 0.03513 1.00% Castro::construct_new_gravity_source() 10 0.0239 0.02566 0.03251 0.92% Gravity::interpolate_monopole_grav() 21 0.02731 0.0293 0.03048 0.86% Castro::finalize_do_advance() 10 0.01492 0.02609 0.02998 0.85% Castro::post_init() 1 0.02412 0.02474 0.02498 0.71% Castro::post_timestep() 10 0.01606 0.01687 0.01802 0.51% Castro::check_for_nan() 20 0.01048 0.01199 0.01404 0.40% MultiFab::contains_nan() 20 0.01045 0.01197 0.01401 0.40% Castro::apply_source_to_state() 20 0.01133 0.01241 0.01341 0.38% FabArray::Saxpy() 20 0.01129 0.01236 0.01335 0.38% FabArray::setDomainBndry() 41 0.007524 0.01045 0.01285 0.36% VisMF::Write(FabArray) 2 0.009344 0.009826 0.01224 0.35% Castro::Castro() 1 0.01047 0.01104 0.01187 0.34% Castro::construct_old_source() 50 0.006567 0.00908 0.01001 0.28% Castro::construct_old_gravity_source() 10 0.006518 0.009008 0.009934 0.28% Castro::computeNewDt() 9 0.009116 0.009122 0.00913 0.26% Castro::initMFs() 1 0.006488 0.007053 0.008398 0.24% Castro::enforce_min_density() 62 0.007238 0.007397 0.007599 0.22% Other 199 0.02063 0.0238 0.02793 0.79% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6688 KiB 6694 KiB 6695 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4509 KiB 4516 KiB 4520 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 230 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2774 KiB 2777 KiB 2779 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 238 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 44 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-17-g2aa22d1758cf) finalized