Initializing AMReX (24.11-17-g2aa22d1758cf)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-17-g2aa22d1758cf) initialized Starting run at 06:21:04 UTC on 2024-11-13. Successfully read inputs file ... Castro git describe: 24.11-1-gb38a018a1 AMReX git describe: 24.11-17-g2aa22d175 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014729904 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354852078 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.354571101 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.344641072 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.330996474 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367634464 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311928253 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305523414 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305843385 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306315261 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31146201 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008069301 seconds Ending run at 06:21:08 UTC on 2024-11-13. Run time = 3.48964258 Run time without initialization = 3.3068276 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4889 ... 3.4892 ... 3.4897 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1996 2.3102 2.3739 68.03% Gravity::make_radial_gravity() 21 0.2865 0.2997 0.3107 8.90% check_for_negative_density() 10 0.05228 0.1182 0.2331 6.68% Castro::initData() 1 0.04758 0.08591 0.1198 3.43% Castro::estTimeStep() 21 0.02265 0.0612 0.1012 2.90% FabArray::ParallelCopy_finish() 41 0.03657 0.05623 0.1004 2.88% amrex::Copy() 193 0.06322 0.08179 0.0946 2.71% FabArray::setVal() 143 0.05291 0.0652 0.07214 2.07% FabArray::ParallelCopy_nowait() 41 0.03633 0.0428 0.05168 1.48% Castro::reset_internal_energy(Fab) 1008 0.04442 0.04644 0.04836 1.39% Castro::normalize_species() 62 0.04181 0.04292 0.04777 1.37% FillPatchIterator::Initialize 41 0.02709 0.0351 0.04113 1.18% StateData::FillBoundary(geom) 41 0.02909 0.03238 0.03505 1.00% Gravity::interpolate_monopole_grav() 21 0.02755 0.02937 0.03036 0.87% Castro::construct_new_gravity_source() 10 0.02276 0.024 0.02575 0.74% Castro::computeTemp() 63 0.01996 0.02066 0.02133 0.61% Castro::initialize_do_advance() 10 0.01122 0.01584 0.01719 0.49% FabArray::setDomainBndry() 41 0.007241 0.01154 0.01598 0.46% MultiFab::contains_nan() 20 0.01028 0.01103 0.01352 0.39% VisMF::Write(FabArray) 2 0.009216 0.00992 0.01333 0.38% Castro::initialize_advance() 10 0.005398 0.01041 0.01318 0.38% FabArray::Saxpy() 20 0.01072 0.01203 0.0128 0.37% Amr::writePlotFile() 2 0.007743 0.009997 0.01055 0.30% Castro::construct_old_gravity_source() 10 0.006659 0.008582 0.008984 0.26% Castro::initMFs() 1 0.006527 0.007087 0.008221 0.24% Castro::construct_new_source() 50 0.005826 0.006211 0.006493 0.19% main() 1 0.003642 0.003882 0.004432 0.13% Gravity::get_new_grav_vector() 11 0.003041 0.003671 0.004055 0.12% Gravity::get_old_grav_vector() 10 0.001687 0.002067 0.002415 0.07% Amr::coarseTimeStep() 10 0.0007815 0.001576 0.002124 0.06% Castro::finalize_do_advance() 10 0.0003905 0.0009772 0.001333 0.04% AmrLevel::FillPatch() 41 0.0007267 0.0009577 0.001281 0.04% Amr::timeStep() 10 0.0001687 0.000217 0.0004062 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002762 0.0002909 0.0003027 0.01% Castro::do_advance_ctu() 10 0.0001277 0.0001482 0.000178 0.01% FillPatchIterator::FillFromLevel0() 41 9.905e-05 0.0001185 0.0001741 0.00% Castro::clean_state() 62 0.0001379 0.0001506 0.0001733 0.00% StateDataPhysBCFunct::() 41 0.0001087 0.0001279 0.0001528 0.00% FabArray::ParallelCopy() 41 8.954e-05 9.821e-05 0.0001127 0.00% FillPatchSingleLevel 41 7.436e-05 8.154e-05 0.0001049 0.00% Castro::do_old_sources() 10 7.344e-05 8.642e-05 0.0001031 0.00% Castro::Castro() 1 5.219e-05 8.252e-05 0.0001027 0.00% Castro::construct_old_source() 50 5.833e-05 7.427e-05 9.414e-05 0.00% Amr::FinalizeInit() 1 4.218e-06 1.55e-05 8.771e-05 0.00% Castro::do_new_sources() 10 5.176e-05 6e-05 8.129e-05 0.00% Castro::subcycle_advance_ctu() 10 4.541e-05 5.216e-05 6.382e-05 0.00% Amr::defBaseLevel() 1 4.396e-05 5.082e-05 6.342e-05 0.00% Castro::advance() 10 4.138e-05 4.822e-05 6.304e-05 0.00% Castro::construct_new_gravity() 10 2.806e-05 3.403e-05 4.725e-05 0.00% Castro::apply_source_to_state() 20 3.978e-05 4.337e-05 4.717e-05 0.00% Castro::construct_old_gravity() 10 3.262e-05 3.518e-05 3.819e-05 0.00% Castro::check_for_nan() 20 2.387e-05 2.776e-05 3.447e-05 0.00% Castro::expand_state() 10 2.215e-05 2.668e-05 3.314e-05 0.00% Castro::post_timestep() 10 1.587e-05 1.75e-05 1.868e-05 0.00% Castro::post_init() 1 9.095e-06 1.043e-05 1.323e-05 0.00% Castro::computeNewDt() 9 8.502e-06 8.99e-06 9.761e-06 0.00% Amr::init() 1 1.792e-06 2.975e-06 8.255e-06 0.00% Amr::InitializeInit() 1 2.607e-06 3.319e-06 5.995e-06 0.00% Castro::computeInitialDt() 2 3.237e-06 3.715e-06 4.232e-06 0.00% Amr::initialInit() 1 1.507e-06 1.864e-06 2.26e-06 0.00% Other 261 0.01625 0.01929 0.021 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.489 3.489 3.49 100.00% Amr::coarseTimeStep() 10 3.294 3.294 3.294 94.40% Amr::timeStep() 10 3.282 3.283 3.284 94.10% Castro::advance() 10 3.266 3.267 3.267 93.62% Castro::subcycle_advance_ctu() 10 3.192 3.197 3.213 92.08% Castro::do_advance_ctu() 10 3.192 3.197 3.213 92.07% Castro::construct_ctu_hydro_source() 10 2.447 2.449 2.453 70.30% Gravity::make_radial_gravity() 21 0.3031 0.3158 0.3225 9.24% check_for_negative_density() 10 0.05228 0.1182 0.2331 6.68% AmrLevel::FillPatch() 41 0.2044 0.2137 0.2256 6.47% Gravity::get_new_grav_vector() 11 0.2094 0.2104 0.2115 6.06% FillPatchIterator::Initialize 41 0.1692 0.1786 0.2008 5.75% Castro::construct_old_gravity() 10 0.1815 0.1924 0.1987 5.69% Gravity::get_old_grav_vector() 10 0.1804 0.1915 0.1981 5.68% Castro::initialize_do_advance() 10 0.172 0.1788 0.1899 5.44% Castro::construct_new_gravity() 10 0.1868 0.1875 0.1883 5.39% Amr::init() 1 0.1823 0.1824 0.1825 5.23% Amr::initialInit() 1 0.1674 0.168 0.1682 4.82% FillPatchIterator::FillFromLevel0() 41 0.1121 0.1319 0.1665 4.77% FillPatchSingleLevel 41 0.112 0.1318 0.1663 4.77% Amr::InitializeInit() 1 0.06803 0.1068 0.1414 4.05% Amr::defBaseLevel() 1 0.06803 0.1068 0.1414 4.05% FabArray::ParallelCopy() 41 0.08046 0.09923 0.1369 3.92% Castro::expand_state() 10 0.118 0.1252 0.1347 3.86% Castro::initData() 1 0.05158 0.08986 0.1238 3.55% Castro::clean_state() 62 0.1136 0.1168 0.1201 3.44% Castro::estTimeStep() 21 0.02265 0.0612 0.1012 2.90% FabArray::ParallelCopy_finish() 41 0.03657 0.05623 0.1004 2.88% Amr::FinalizeInit() 1 0.02669 0.06123 0.1001 2.87% Castro::do_old_sources() 10 0.08881 0.0939 0.09662 2.77% amrex::Copy() 193 0.06322 0.08179 0.0946 2.71% Castro::computeInitialDt() 2 0.002199 0.0368 0.07557 2.17% FabArray::setVal() 143 0.05291 0.0652 0.07214 2.07% Castro::initialize_advance() 10 0.04969 0.06662 0.07151 2.05% Castro::computeTemp() 63 0.06466 0.0674 0.06957 1.99% Castro::do_new_sources() 10 0.05819 0.06288 0.06712 1.92% FabArray::ParallelCopy_nowait() 41 0.03645 0.0429 0.05177 1.48% Castro::reset_internal_energy(MultiFab) 63 0.0447 0.04673 0.04866 1.39% Castro::reset_internal_energy(Fab) 1008 0.04442 0.04644 0.04836 1.39% Castro::normalize_species() 62 0.04181 0.04292 0.04777 1.37% StateDataPhysBCFunct::() 41 0.02924 0.03251 0.03519 1.01% StateData::FillBoundary(geom) 41 0.02909 0.03238 0.03505 1.00% Castro::construct_new_source() 50 0.02859 0.03021 0.03215 0.92% Gravity::interpolate_monopole_grav() 21 0.02755 0.02937 0.03036 0.87% Castro::construct_new_gravity_source() 10 0.02276 0.024 0.02575 0.74% Castro::post_init() 1 0.02308 0.02386 0.02401 0.69% Amr::writePlotFile() 2 0.02244 0.02256 0.02305 0.66% Castro::finalize_do_advance() 10 0.0117 0.01654 0.02131 0.61% Castro::post_timestep() 10 0.01548 0.01591 0.0163 0.47% FabArray::setDomainBndry() 41 0.007241 0.01154 0.01598 0.46% Castro::check_for_nan() 20 0.0103 0.01105 0.01355 0.39% MultiFab::contains_nan() 20 0.01028 0.01103 0.01352 0.39% VisMF::Write(FabArray) 2 0.009216 0.00992 0.01333 0.38% Castro::apply_source_to_state() 20 0.01077 0.01207 0.01285 0.37% FabArray::Saxpy() 20 0.01072 0.01203 0.0128 0.37% Castro::Castro() 1 0.01012 0.01102 0.01185 0.34% Castro::construct_old_source() 50 0.006717 0.008656 0.009056 0.26% Castro::construct_old_gravity_source() 10 0.006659 0.008582 0.008984 0.26% Castro::computeNewDt() 9 0.008835 0.00885 0.008858 0.25% Castro::initMFs() 1 0.006527 0.007087 0.008221 0.24% Other 261 0.0262 0.03005 0.03264 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6759 KiB 6762 KiB 6763 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4571 KiB 4577 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 235 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2808 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 230 KiB 235 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 44 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-17-g2aa22d1758cf) finalized