Initializing AMReX (24.11-20-g294b6fee6f0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-20-g294b6fee6f0c) initialized Starting run at 13:03:17 UTC on 2024-11-14. Successfully read inputs file ... Castro git describe: 24.11-8-g8c15b8104 AMReX git describe: 24.11-20-g294b6fee6 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.069482495 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355853216 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346350937 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327410493 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.361150062 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364497681 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.330218524 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.313186144 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313865992 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.31484225 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.31450913 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008794371 seconds Ending run at 13:03:21 UTC on 2024-11-14. Run time = 3.615311446 Run time without initialization = 3.356301879 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.6138 ... 3.6144 ... 3.6154 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2879 2.3164 2.3575 65.21% Gravity::make_radial_gravity() 21 0.3079 0.3195 0.3395 9.39% check_for_negative_density() 10 0.07106 0.1198 0.1528 4.23% Castro::initData() 1 0.05018 0.09139 0.1399 3.87% Castro::estTimeStep() 21 0.03817 0.08388 0.1247 3.45% FabArray::ParallelCopy_finish() 41 0.05375 0.06886 0.09223 2.55% amrex::Copy() 193 0.06254 0.07822 0.08729 2.41% FabArray::setVal() 143 0.0641 0.06943 0.07782 2.15% Amr::writePlotFile() 2 0.06277 0.06585 0.06695 1.85% Castro::reset_internal_energy(Fab) 1008 0.0464 0.0479 0.05007 1.38% Castro::normalize_species() 62 0.04225 0.04269 0.04434 1.23% FabArray::ParallelCopy_nowait() 41 0.03464 0.04036 0.04325 1.20% StateData::FillBoundary(geom) 41 0.03021 0.03384 0.03887 1.08% FillPatchIterator::Initialize 41 0.02813 0.03203 0.03423 0.95% Gravity::interpolate_monopole_grav() 21 0.02758 0.02902 0.02988 0.83% Castro::construct_new_gravity_source() 10 0.02423 0.02553 0.0281 0.78% Castro::computeTemp() 63 0.02078 0.02125 0.0218 0.60% Castro::initialize_do_advance() 10 0.01265 0.01721 0.02045 0.57% MultiFab::contains_nan() 20 0.0104 0.01167 0.01657 0.46% Castro::initialize_advance() 10 0.009852 0.01134 0.0137 0.38% VisMF::Write(FabArray) 2 0.008921 0.009731 0.01271 0.35% FabArray::Saxpy() 20 0.01028 0.01146 0.01225 0.34% FabArray::setDomainBndry() 41 0.006816 0.009326 0.01187 0.33% Castro::construct_old_gravity_source() 10 0.006625 0.008529 0.009281 0.26% Castro::initMFs() 1 0.006368 0.007148 0.007801 0.22% Castro::construct_new_source() 50 0.005447 0.0059 0.006102 0.17% Gravity::get_new_grav_vector() 11 0.00344 0.004257 0.005604 0.16% main() 1 0.003333 0.003926 0.004992 0.14% Amr::coarseTimeStep() 10 0.001918 0.00223 0.002592 0.07% Gravity::get_old_grav_vector() 10 0.001492 0.002031 0.002346 0.06% AmrLevel::FillPatch() 41 0.0007753 0.001022 0.001213 0.03% Castro::finalize_do_advance() 10 0.0004992 0.0009432 0.00105 0.03% Amr::timeStep() 10 0.00017 0.0002264 0.000417 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002757 0.0002929 0.0003124 0.01% Castro::clean_state() 62 0.00015 0.000166 0.000206 0.01% Castro::do_advance_ctu() 10 0.000146 0.0001588 0.0001754 0.00% StateDataPhysBCFunct::() 41 0.0001029 0.0001186 0.0001671 0.00% FillPatchIterator::FillFromLevel0() 41 9.718e-05 0.0001077 0.0001221 0.00% Amr::FinalizeInit() 1 3.904e-06 1.85e-05 0.000111 0.00% FabArray::ParallelCopy() 41 8.543e-05 9.48e-05 0.0001073 0.00% Castro::do_old_sources() 10 8.486e-05 9.174e-05 9.759e-05 0.00% FillPatchSingleLevel 41 7.067e-05 7.844e-05 8.884e-05 0.00% Castro::construct_old_source() 50 5.968e-05 7.204e-05 8.259e-05 0.00% Castro::Castro() 1 5.663e-05 7.044e-05 7.835e-05 0.00% Castro::do_new_sources() 10 4.948e-05 5.844e-05 6.797e-05 0.00% Amr::defBaseLevel() 1 4.044e-05 5.16e-05 6.141e-05 0.00% Castro::subcycle_advance_ctu() 10 4.508e-05 5.01e-05 5.567e-05 0.00% Castro::advance() 10 3.971e-05 4.577e-05 5.232e-05 0.00% Castro::apply_source_to_state() 20 3.817e-05 4.367e-05 4.733e-05 0.00% Castro::construct_old_gravity() 10 3.306e-05 3.771e-05 4.535e-05 0.00% Castro::construct_new_gravity() 10 2.783e-05 3.377e-05 4.279e-05 0.00% Castro::expand_state() 10 2.122e-05 2.666e-05 3.873e-05 0.00% Castro::check_for_nan() 20 2.562e-05 2.717e-05 3.122e-05 0.00% Castro::post_timestep() 10 1.404e-05 1.792e-05 2.717e-05 0.00% Castro::post_init() 1 8.814e-06 1.379e-05 2.537e-05 0.00% Castro::computeNewDt() 9 8.242e-06 9.016e-06 1.044e-05 0.00% Amr::InitializeInit() 1 2.812e-06 3.579e-06 5.785e-06 0.00% Castro::computeInitialDt() 2 3.472e-06 3.818e-06 4.578e-06 0.00% Amr::init() 1 1.945e-06 2.395e-06 3.005e-06 0.00% Amr::initialInit() 1 1.568e-06 1.998e-06 2.445e-06 0.00% Other 261 0.01736 0.01965 0.02121 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.614 3.614 3.615 100.00% Amr::coarseTimeStep() 10 3.343 3.343 3.343 92.46% Amr::timeStep() 10 3.33 3.33 3.331 92.13% Castro::advance() 10 3.314 3.314 3.315 91.68% Castro::subcycle_advance_ctu() 10 3.232 3.239 3.242 89.67% Castro::do_advance_ctu() 10 3.232 3.239 3.242 89.67% Castro::construct_ctu_hydro_source() 10 2.452 2.459 2.464 68.16% Gravity::make_radial_gravity() 21 0.3222 0.3354 0.3529 9.76% Amr::init() 1 0.2585 0.2586 0.2587 7.15% AmrLevel::FillPatch() 41 0.2002 0.2166 0.2275 6.29% Castro::construct_old_gravity() 10 0.1941 0.2075 0.2222 6.15% Gravity::get_old_grav_vector() 10 0.1929 0.2068 0.2216 6.13% Gravity::get_new_grav_vector() 11 0.2149 0.2177 0.2194 6.07% Castro::construct_new_gravity() 10 0.1919 0.1943 0.1957 5.41% FillPatchIterator::Initialize 41 0.1679 0.1849 0.1925 5.33% Castro::initialize_do_advance() 10 0.1627 0.1746 0.1896 5.24% Amr::initialInit() 1 0.1889 0.1891 0.1892 5.23% Amr::InitializeInit() 1 0.06957 0.1121 0.1618 4.47% Amr::defBaseLevel() 1 0.06956 0.1121 0.1618 4.47% FillPatchIterator::FillFromLevel0() 41 0.1262 0.1435 0.1576 4.36% FillPatchSingleLevel 41 0.1261 0.1434 0.1575 4.36% check_for_negative_density() 10 0.07106 0.1198 0.1528 4.23% Castro::initData() 1 0.05397 0.09507 0.1436 3.97% Castro::expand_state() 10 0.1099 0.1197 0.1316 3.64% FabArray::ParallelCopy() 41 0.09354 0.1094 0.1271 3.51% Castro::estTimeStep() 21 0.03817 0.08388 0.1247 3.45% Castro::clean_state() 62 0.1175 0.1187 0.1208 3.34% Amr::FinalizeInit() 1 0.02712 0.07695 0.1193 3.30% Castro::do_old_sources() 10 0.09458 0.09847 0.1028 2.84% Castro::computeInitialDt() 2 0.002289 0.05189 0.09434 2.61% FabArray::ParallelCopy_finish() 41 0.05375 0.06886 0.09223 2.55% amrex::Copy() 193 0.06254 0.07822 0.08729 2.41% Castro::initialize_advance() 10 0.0681 0.07182 0.07879 2.18% Amr::writePlotFile() 2 0.07834 0.07844 0.07866 2.18% FabArray::setVal() 143 0.0641 0.06943 0.07782 2.15% Castro::computeTemp() 63 0.06779 0.06945 0.07219 2.00% Castro::do_new_sources() 10 0.06122 0.06524 0.07166 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04668 0.0482 0.05038 1.39% Castro::reset_internal_energy(Fab) 1008 0.0464 0.0479 0.05007 1.38% Castro::normalize_species() 62 0.04225 0.04269 0.04434 1.23% FabArray::ParallelCopy_nowait() 41 0.03473 0.04045 0.04334 1.20% StateDataPhysBCFunct::() 41 0.03034 0.03396 0.03899 1.08% StateData::FillBoundary(geom) 41 0.03021 0.03384 0.03887 1.08% Castro::construct_new_source() 50 0.03003 0.03143 0.03407 0.94% Gravity::interpolate_monopole_grav() 21 0.02758 0.02902 0.02988 0.83% Castro::finalize_do_advance() 10 0.01813 0.02414 0.02871 0.79% Castro::construct_new_gravity_source() 10 0.02423 0.02553 0.0281 0.78% Castro::post_init() 1 0.02431 0.02456 0.02468 0.68% Castro::check_for_nan() 20 0.01043 0.0117 0.0166 0.46% MultiFab::contains_nan() 20 0.0104 0.01167 0.01657 0.46% Castro::post_timestep() 10 0.0157 0.0161 0.01641 0.45% VisMF::Write(FabArray) 2 0.008921 0.009731 0.01271 0.35% Castro::apply_source_to_state() 20 0.01032 0.01151 0.01229 0.34% FabArray::Saxpy() 20 0.01028 0.01146 0.01225 0.34% FabArray::setDomainBndry() 41 0.006816 0.009326 0.01187 0.33% Castro::Castro() 1 0.009387 0.01083 0.01173 0.32% Castro::construct_old_source() 50 0.006686 0.008601 0.009356 0.26% Castro::construct_old_gravity_source() 10 0.006625 0.008529 0.009281 0.26% Castro::computeNewDt() 9 0.008794 0.008805 0.008819 0.24% Castro::initMFs() 1 0.006368 0.007148 0.007801 0.22% Other 261 0.02753 0.03099 0.03374 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6619 KiB 6624 KiB 6626 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4467 KiB 4476 KiB 4481 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 224 KiB 233 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 15 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2747 KiB 2749 KiB 2750 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 236 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 46 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-20-g294b6fee6f0c) finalized