Initializing AMReX (24.11-20-g294b6fee6f0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-20-g294b6fee6f0c) initialized Starting run at 06:35:23 UTC on 2024-11-14. Successfully read inputs file ... Castro git describe: 24.11-2-g161c875ae AMReX git describe: 24.11-20-g294b6fee6 Microphysics git describe: 24.11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014324027 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344236242 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.357577249 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339770979 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323715507 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372588373 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310212689 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308014903 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304195446 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30636769 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306809825 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007574822 seconds Ending run at 06:35:27 UTC on 2024-11-14. Run time = 3.495874902 Run time without initialization = 3.285552793 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4951 ... 3.4956 ... 3.4960 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2621 2.2947 2.3371 66.85% Gravity::make_radial_gravity() 21 0.2858 0.2923 0.3058 8.75% Castro::initData() 1 0.0477 0.0891 0.1444 4.13% check_for_negative_density() 10 0.06656 0.1102 0.1437 4.11% Castro::estTimeStep() 21 0.03319 0.08463 0.1287 3.68% FabArray::ParallelCopy_finish() 41 0.04024 0.06874 0.1127 3.22% FabArray::setVal() 143 0.05483 0.06938 0.08775 2.51% amrex::Copy() 193 0.06556 0.07873 0.08505 2.43% FabArray::ParallelCopy_nowait() 41 0.03354 0.04234 0.05015 1.43% Castro::reset_internal_energy(Fab) 1008 0.04362 0.04658 0.04749 1.36% Castro::normalize_species() 62 0.04101 0.04156 0.04227 1.21% FillPatchIterator::Initialize 41 0.02762 0.03496 0.03891 1.11% StateData::FillBoundary(geom) 41 0.03037 0.03253 0.03392 0.97% Gravity::interpolate_monopole_grav() 21 0.02725 0.02906 0.02974 0.85% Castro::construct_new_gravity_source() 10 0.02243 0.02378 0.02578 0.74% Castro::initialize_do_advance() 10 0.01146 0.01714 0.02219 0.63% Castro::computeTemp() 63 0.0196 0.02072 0.02105 0.60% Castro::initialize_advance() 10 0.005266 0.01053 0.01348 0.39% FabArray::Saxpy() 20 0.009838 0.01204 0.01309 0.37% FabArray::setDomainBndry() 41 0.006697 0.009616 0.01203 0.34% VisMF::Write(FabArray) 2 0.00899 0.009633 0.01203 0.34% Amr::writePlotFile() 2 0.007416 0.009993 0.01157 0.33% MultiFab::contains_nan() 20 0.0102 0.01096 0.01134 0.32% Castro::construct_old_gravity_source() 10 0.006297 0.008604 0.009224 0.26% Castro::initMFs() 1 0.00666 0.007355 0.007778 0.22% Castro::construct_new_source() 50 0.005457 0.006023 0.006337 0.18% main() 1 0.003136 0.003667 0.003995 0.11% Gravity::get_new_grav_vector() 11 0.002927 0.003507 0.003846 0.11% Amr::coarseTimeStep() 10 0.001004 0.00165 0.002517 0.07% Gravity::get_old_grav_vector() 10 0.001707 0.002036 0.002484 0.07% AmrLevel::FillPatch() 41 0.0007452 0.0009302 0.001092 0.03% Castro::finalize_do_advance() 10 0.0004852 0.0009576 0.001059 0.03% Amr::timeStep() 10 0.0001765 0.0002145 0.0004206 0.01% Castro::Castro() 1 6.426e-05 0.0001236 0.0004034 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002737 0.0002832 0.000306 0.01% Castro::clean_state() 62 0.0001409 0.0001567 0.0001841 0.01% Castro::do_advance_ctu() 10 0.0001273 0.0001498 0.000171 0.00% FillPatchIterator::FillFromLevel0() 41 9.547e-05 0.0001087 0.0001335 0.00% StateDataPhysBCFunct::() 41 9.773e-05 0.0001109 0.0001246 0.00% FabArray::ParallelCopy() 41 8.224e-05 8.877e-05 9.518e-05 0.00% Castro::do_old_sources() 10 7.069e-05 8.67e-05 9.474e-05 0.00% Castro::subcycle_advance_ctu() 10 4.619e-05 6.034e-05 9.172e-05 0.00% FillPatchSingleLevel 41 7.641e-05 7.94e-05 8.514e-05 0.00% Amr::FinalizeInit() 1 4.249e-06 1.437e-05 8.079e-05 0.00% Castro::construct_old_source() 50 5.547e-05 6.834e-05 7.876e-05 0.00% Castro::advance() 10 3.928e-05 4.761e-05 6.953e-05 0.00% Castro::do_new_sources() 10 5.219e-05 6.077e-05 6.915e-05 0.00% Amr::defBaseLevel() 1 4.578e-05 5.998e-05 6.664e-05 0.00% Castro::apply_source_to_state() 20 3.551e-05 4.293e-05 5.216e-05 0.00% Castro::post_timestep() 10 1.508e-05 2.057e-05 4.931e-05 0.00% Castro::construct_new_gravity() 10 3.011e-05 3.577e-05 4.373e-05 0.00% Castro::construct_old_gravity() 10 3.205e-05 3.673e-05 4.195e-05 0.00% Castro::expand_state() 10 2.17e-05 2.506e-05 3.475e-05 0.00% Castro::check_for_nan() 20 2.458e-05 2.589e-05 2.927e-05 0.00% Castro::post_init() 1 8.346e-06 9.95e-06 1.248e-05 0.00% Amr::init() 1 1.839e-06 3.253e-06 1.091e-05 0.00% Castro::computeNewDt() 9 8.221e-06 8.71e-06 9.538e-06 0.00% Castro::computeInitialDt() 2 3.468e-06 4.266e-06 6.294e-06 0.00% Amr::InitializeInit() 1 2.833e-06 3.555e-06 5.319e-06 0.00% Amr::initialInit() 1 1.339e-06 1.998e-06 3.96e-06 0.00% Other 261 0.01783 0.01977 0.02107 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.495 3.496 3.496 100.00% Amr::coarseTimeStep() 10 3.274 3.274 3.274 93.65% Amr::timeStep() 10 3.262 3.262 3.263 93.34% Castro::advance() 10 3.246 3.246 3.246 92.86% Castro::subcycle_advance_ctu() 10 3.156 3.172 3.191 91.28% Castro::do_advance_ctu() 10 3.156 3.172 3.191 91.28% Castro::construct_ctu_hydro_source() 10 2.424 2.426 2.429 69.49% Gravity::make_radial_gravity() 21 0.3019 0.308 0.3179 9.09% AmrLevel::FillPatch() 41 0.1976 0.221 0.2372 6.78% FillPatchIterator::Initialize 41 0.165 0.1887 0.2134 6.10% Amr::init() 1 0.2098 0.2099 0.2099 6.00% Gravity::get_new_grav_vector() 11 0.2046 0.2058 0.2068 5.92% Castro::construct_old_gravity() 10 0.1817 0.1876 0.1975 5.65% Gravity::get_old_grav_vector() 10 0.181 0.1867 0.1967 5.63% Castro::initialize_do_advance() 10 0.1714 0.1845 0.1955 5.59% Amr::initialInit() 1 0.1951 0.1953 0.1954 5.59% Castro::construct_new_gravity() 10 0.1824 0.1833 0.184 5.26% FillPatchIterator::FillFromLevel0() 41 0.1168 0.1441 0.1791 5.12% FillPatchSingleLevel 41 0.1167 0.144 0.179 5.12% Amr::InitializeInit() 1 0.06816 0.1109 0.1672 4.78% Amr::defBaseLevel() 1 0.06815 0.1109 0.1672 4.78% Castro::initData() 1 0.05191 0.09298 0.1487 4.25% FabArray::ParallelCopy() 41 0.08402 0.1113 0.1464 4.19% Castro::expand_state() 10 0.1123 0.1308 0.1462 4.18% check_for_negative_density() 10 0.06656 0.1102 0.1437 4.11% Castro::estTimeStep() 21 0.03319 0.08463 0.1287 3.68% Amr::FinalizeInit() 1 0.02796 0.0844 0.1272 3.64% Castro::clean_state() 62 0.1111 0.1157 0.1176 3.36% FabArray::ParallelCopy_finish() 41 0.04024 0.06874 0.1127 3.22% Castro::computeInitialDt() 2 0.004335 0.06054 0.1034 2.96% Castro::do_old_sources() 10 0.09316 0.09619 0.09798 2.80% FabArray::setVal() 143 0.05483 0.06938 0.08775 2.51% Castro::initialize_advance() 10 0.05142 0.07066 0.08702 2.49% amrex::Copy() 193 0.06556 0.07873 0.08505 2.43% Castro::computeTemp() 63 0.0635 0.06758 0.06875 1.97% Castro::do_new_sources() 10 0.05693 0.06235 0.06606 1.89% FabArray::ParallelCopy_nowait() 41 0.03363 0.04243 0.05026 1.44% Castro::reset_internal_energy(MultiFab) 63 0.0439 0.04686 0.04779 1.37% Castro::reset_internal_energy(Fab) 1008 0.04362 0.04658 0.04749 1.36% Castro::normalize_species() 62 0.04101 0.04156 0.04227 1.21% StateDataPhysBCFunct::() 41 0.0305 0.03264 0.03403 0.97% StateData::FillBoundary(geom) 41 0.03037 0.03253 0.03392 0.97% Castro::construct_new_source() 50 0.02789 0.02981 0.0319 0.91% Gravity::interpolate_monopole_grav() 21 0.02725 0.02906 0.02974 0.85% Castro::construct_new_gravity_source() 10 0.02243 0.02378 0.02578 0.74% Castro::post_init() 1 0.02293 0.02339 0.02355 0.67% Amr::writePlotFile() 2 0.02214 0.02223 0.02244 0.64% Castro::finalize_do_advance() 10 0.01226 0.01622 0.02052 0.59% Castro::post_timestep() 10 0.01507 0.01596 0.01659 0.47% Castro::apply_source_to_state() 20 0.009874 0.01208 0.01313 0.38% FabArray::Saxpy() 20 0.009838 0.01204 0.01309 0.37% Castro::Castro() 1 0.009912 0.01158 0.01249 0.36% FabArray::setDomainBndry() 41 0.006697 0.009616 0.01203 0.34% VisMF::Write(FabArray) 2 0.00899 0.009633 0.01203 0.34% Castro::check_for_nan() 20 0.01023 0.01098 0.01137 0.33% MultiFab::contains_nan() 20 0.0102 0.01096 0.01134 0.32% Castro::construct_old_source() 50 0.006353 0.008672 0.009294 0.27% Castro::construct_old_gravity_source() 10 0.006297 0.008604 0.009224 0.26% Castro::computeNewDt() 9 0.008822 0.008838 0.008847 0.25% Castro::initMFs() 1 0.00666 0.007355 0.007778 0.22% Other 261 0.02843 0.03095 0.03293 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 38 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8672 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6701 KiB 6707 KiB 6711 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4511 KiB 4533 KiB 4561 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 214 KiB 244 KiB 266 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2782 KiB 2785 KiB 2785 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 220 KiB 224 KiB 232 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 51 KiB 70 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 68 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-20-g294b6fee6f0c) finalized