Initializing AMReX (24.11-21-g0165b6743355)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-21-g0165b6743355) initialized Starting run at 06:21:14 UTC on 2024-11-15. Successfully read inputs file ... Castro git describe: 24.11-3-gaed032835 AMReX git describe: 24.11-21-g0165b6743 Microphysics git describe: 24.11-1-ged9c7fb5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015426118 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354414134 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.356444608 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.333784282 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.340705799 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370383281 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308843529 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303550419 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.308094858 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305750954 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30752287 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007895309 seconds Ending run at 06:21:17 UTC on 2024-11-15. Run time = 3.514523247 Run time without initialization = 3.306812824 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.5141 ... 3.5144 ... 3.5146 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2240 2.2934 2.3377 66.51% Gravity::make_radial_gravity() 21 0.2893 0.2953 0.3065 8.72% check_for_negative_density() 10 0.06186 0.1076 0.1784 5.08% Castro::initData() 1 0.04756 0.08926 0.1423 4.05% Castro::estTimeStep() 21 0.03509 0.09056 0.1353 3.85% amrex::Copy() 193 0.07467 0.08024 0.08866 2.52% FabArray::setVal() 143 0.06495 0.07207 0.08217 2.34% FabArray::ParallelCopy_finish() 41 0.03913 0.059 0.07835 2.23% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04661 0.04956 1.41% Castro::normalize_species() 62 0.04128 0.04235 0.04374 1.24% FabArray::ParallelCopy_nowait() 41 0.04023 0.04155 0.04265 1.21% FillPatchIterator::Initialize 41 0.02764 0.03504 0.03939 1.12% StateData::FillBoundary(geom) 41 0.02964 0.03292 0.03545 1.01% Gravity::interpolate_monopole_grav() 21 0.02725 0.02904 0.02981 0.85% Castro::computeTemp() 63 0.01985 0.02154 0.02589 0.74% Castro::construct_new_gravity_source() 10 0.02342 0.02453 0.02585 0.74% Castro::initialize_do_advance() 10 0.01254 0.01868 0.02238 0.64% Amr::coarseTimeStep() 10 0.006257 0.01113 0.01534 0.44% MultiFab::contains_nan() 20 0.01013 0.01126 0.01431 0.41% Castro::initialize_advance() 10 0.009667 0.01139 0.01357 0.39% FabArray::Saxpy() 20 0.01098 0.01267 0.01356 0.39% FabArray::setDomainBndry() 41 0.008127 0.01095 0.01295 0.37% VisMF::Write(FabArray) 2 0.009478 0.009957 0.01241 0.35% Amr::writePlotFile() 2 0.008255 0.01078 0.01133 0.32% Castro::construct_old_gravity_source() 10 0.008028 0.00942 0.009793 0.28% Castro::initMFs() 1 0.00663 0.007267 0.008269 0.24% Castro::construct_new_source() 50 0.006037 0.006276 0.006642 0.19% main() 1 0.003554 0.003877 0.004072 0.12% Gravity::get_new_grav_vector() 11 0.003022 0.003528 0.003946 0.11% Gravity::get_old_grav_vector() 10 0.001669 0.00201 0.002536 0.07% Castro::finalize_do_advance() 10 0.001149 0.001281 0.001625 0.05% AmrLevel::FillPatch() 41 0.0008234 0.001054 0.001442 0.04% Amr::timeStep() 10 0.0001722 0.0002123 0.0004157 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002798 0.000292 0.0003144 0.01% Castro::do_advance_ctu() 10 0.0001299 0.0001476 0.0001905 0.01% Castro::clean_state() 62 0.0001425 0.000162 0.0001775 0.01% StateDataPhysBCFunct::() 41 9.805e-05 0.0001197 0.0001641 0.00% FillPatchIterator::FillFromLevel0() 41 9.869e-05 0.0001129 0.0001233 0.00% Castro::do_old_sources() 10 8.269e-05 9.133e-05 0.0001039 0.00% FabArray::ParallelCopy() 41 8.197e-05 8.99e-05 0.0001036 0.00% FillPatchSingleLevel 41 7.209e-05 8.259e-05 9.394e-05 0.00% Amr::FinalizeInit() 1 4.101e-06 1.525e-05 9.109e-05 0.00% Castro::construct_old_source() 50 6.18e-05 7.283e-05 8.879e-05 0.00% Castro::Castro() 1 5.676e-05 6.664e-05 7.78e-05 0.00% Castro::do_new_sources() 10 5.165e-05 6.037e-05 6.781e-05 0.00% Amr::defBaseLevel() 1 4.004e-05 4.783e-05 6.049e-05 0.00% Castro::subcycle_advance_ctu() 10 4.689e-05 5.33e-05 5.982e-05 0.00% Castro::advance() 10 3.883e-05 4.587e-05 5.756e-05 0.00% Castro::apply_source_to_state() 20 4.064e-05 4.727e-05 5.558e-05 0.00% Castro::construct_old_gravity() 10 3.237e-05 3.617e-05 4.057e-05 0.00% Castro::construct_new_gravity() 10 2.907e-05 3.322e-05 3.942e-05 0.00% Castro::computeNewDt() 9 8.063e-06 1.681e-05 3.397e-05 0.00% Castro::check_for_nan() 20 2.285e-05 2.597e-05 2.98e-05 0.00% Castro::expand_state() 10 2.133e-05 2.475e-05 2.792e-05 0.00% Castro::post_timestep() 10 1.471e-05 2.009e-05 2.348e-05 0.00% Castro::post_init() 1 8.779e-06 9.835e-06 1.185e-05 0.00% Amr::InitializeInit() 1 2.66e-06 3.466e-06 6.105e-06 0.00% Castro::computeInitialDt() 2 3.572e-06 3.865e-06 4.228e-06 0.00% Amr::init() 1 1.812e-06 2.159e-06 2.774e-06 0.00% Amr::initialInit() 1 1.583e-06 1.864e-06 2.076e-06 0.00% Other 261 0.0177 0.01996 0.02146 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.514 3.514 3.515 100.00% Amr::coarseTimeStep() 10 3.295 3.295 3.295 93.75% Amr::timeStep() 10 3.268 3.271 3.275 93.18% Castro::advance() 10 3.252 3.254 3.256 92.63% Castro::subcycle_advance_ctu() 10 3.17 3.177 3.183 90.58% Castro::do_advance_ctu() 10 3.17 3.177 3.183 90.57% Castro::construct_ctu_hydro_source() 10 2.419 2.422 2.424 68.97% Gravity::make_radial_gravity() 21 0.3056 0.3116 0.3216 9.15% AmrLevel::FillPatch() 41 0.192 0.2122 0.2272 6.46% Gravity::get_new_grav_vector() 11 0.2062 0.2071 0.2078 5.91% Amr::init() 1 0.2072 0.2073 0.2073 5.90% Castro::construct_old_gravity() 10 0.1869 0.1904 0.1985 5.65% Gravity::get_old_grav_vector() 10 0.1861 0.1895 0.1974 5.62% FillPatchIterator::Initialize 41 0.1645 0.18 0.1928 5.49% Amr::initialInit() 1 0.1914 0.1916 0.1917 5.46% Castro::initialize_do_advance() 10 0.1654 0.1792 0.1869 5.32% Castro::construct_new_gravity() 10 0.1825 0.1832 0.1838 5.23% check_for_negative_density() 10 0.06186 0.1076 0.1784 5.08% Amr::InitializeInit() 1 0.06863 0.1101 0.164 4.67% Amr::defBaseLevel() 1 0.06863 0.1101 0.164 4.67% FillPatchIterator::FillFromLevel0() 41 0.1155 0.134 0.152 4.32% FillPatchSingleLevel 41 0.1154 0.1339 0.1519 4.32% Castro::initData() 1 0.05132 0.09303 0.146 4.15% Castro::estTimeStep() 21 0.03509 0.09056 0.1353 3.85% Castro::expand_state() 10 0.107 0.1234 0.1331 3.79% Amr::FinalizeInit() 1 0.02769 0.08154 0.123 3.50% Castro::clean_state() 62 0.1129 0.1174 0.121 3.44% FabArray::ParallelCopy() 41 0.08124 0.1007 0.1189 3.38% Castro::do_old_sources() 10 0.09575 0.0972 0.09956 2.83% Castro::computeInitialDt() 2 0.002498 0.05643 0.09791 2.79% amrex::Copy() 193 0.07467 0.08024 0.08866 2.52% FabArray::setVal() 143 0.06495 0.07207 0.08217 2.34% Castro::initialize_advance() 10 0.06868 0.07294 0.08085 2.30% FabArray::ParallelCopy_finish() 41 0.03913 0.059 0.07835 2.23% Castro::do_new_sources() 10 0.0618 0.06536 0.07224 2.06% Castro::computeTemp() 63 0.06482 0.06843 0.07164 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04474 0.0469 0.04985 1.42% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04661 0.04956 1.41% Castro::normalize_species() 62 0.04128 0.04235 0.04374 1.24% FabArray::ParallelCopy_nowait() 41 0.04035 0.04165 0.04273 1.22% StateDataPhysBCFunct::() 41 0.02976 0.03304 0.03556 1.01% StateData::FillBoundary(geom) 41 0.02964 0.03292 0.03545 1.01% Castro::construct_new_source() 50 0.02953 0.03081 0.03249 0.92% Gravity::interpolate_monopole_grav() 21 0.02725 0.02904 0.02981 0.85% Castro::finalize_do_advance() 10 0.01574 0.02374 0.02871 0.82% Castro::construct_new_gravity_source() 10 0.02342 0.02453 0.02585 0.74% Castro::post_init() 1 0.02468 0.02486 0.02501 0.71% Amr::writePlotFile() 2 0.02358 0.02368 0.02388 0.68% Castro::post_timestep() 10 0.01549 0.01678 0.01922 0.55% Castro::check_for_nan() 20 0.01016 0.01129 0.01434 0.41% MultiFab::contains_nan() 20 0.01013 0.01126 0.01431 0.41% Castro::apply_source_to_state() 20 0.01102 0.01272 0.0136 0.39% FabArray::Saxpy() 20 0.01098 0.01267 0.01356 0.39% FabArray::setDomainBndry() 41 0.008127 0.01095 0.01295 0.37% VisMF::Write(FabArray) 2 0.009478 0.009957 0.01241 0.35% Castro::computeNewDt() 9 0.009811 0.0117 0.01233 0.35% Castro::Castro() 1 0.01001 0.01096 0.01203 0.34% Castro::construct_old_source() 50 0.008089 0.009493 0.009881 0.28% Castro::construct_old_gravity_source() 10 0.008028 0.00942 0.009793 0.28% Castro::initMFs() 1 0.00663 0.007267 0.008269 0.24% Other 261 0.02766 0.03133 0.03505 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8665 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6708 KiB 6714 KiB 6715 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4503 KiB 4516 KiB 4526 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 231 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2772 KiB 2776 KiB 2779 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 226 KiB 233 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 45 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-21-g0165b6743355) finalized