Initializing AMReX (24.11-25-gb98eaaf82c7c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-25-gb98eaaf82c7c) initialized Starting run at 23:32:51 UTC on 2024-11-18. Successfully read inputs file ... Castro git describe: 24.11-7-g9ffa255c8 AMReX git describe: 24.11-25-gb98eaaf82 Microphysics git describe: 24.11-1-ged9c7fb5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015598259 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.334807061 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.318746366 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314366137 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320131833 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363141419 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.297690482 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.285646366 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.286153463 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.286200422 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.287900829 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007587836 seconds Ending run at 23:32:54 UTC on 2024-11-18. Run time = 3.276520146 Run time without initialization = 3.107558738 Average number of zones advanced per microsecond: 0.844 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2758 ... 3.2762 ... 3.2766 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0192 2.1299 2.1889 66.80% Gravity::make_radial_gravity() 21 0.2987 0.3054 0.3132 9.56% check_for_negative_density() 10 0.03053 0.09287 0.2072 6.32% Castro::initData() 1 0.03856 0.07144 0.1015 3.10% amrex::Copy() 193 0.07771 0.08446 0.09091 2.77% Castro::estTimeStep() 21 0.02777 0.05951 0.08868 2.71% FabArray::setVal() 143 0.06724 0.07052 0.07393 2.26% FabArray::ParallelCopy_finish() 41 0.03802 0.04589 0.05868 1.79% Castro::normalize_species() 62 0.04535 0.0462 0.0474 1.45% Castro::reset_internal_energy(Fab) 1008 0.04463 0.04604 0.04703 1.44% FabArray::ParallelCopy_nowait() 41 0.03825 0.04212 0.04364 1.33% FillPatchIterator::Initialize 41 0.02851 0.03407 0.03639 1.11% StateData::FillBoundary(geom) 41 0.02929 0.03281 0.03545 1.08% Gravity::interpolate_monopole_grav() 21 0.02707 0.02748 0.02795 0.85% Castro::construct_new_gravity_source() 10 0.02343 0.0247 0.02643 0.81% Castro::computeTemp() 63 0.01803 0.01834 0.01883 0.57% Castro::initialize_do_advance() 10 0.0161 0.01772 0.01856 0.57% Castro::initialize_advance() 10 0.01038 0.01221 0.0145 0.44% FabArray::Saxpy() 20 0.01215 0.01324 0.01367 0.42% VisMF::Write(FabArray) 2 0.009379 0.009915 0.01271 0.39% MultiFab::contains_nan() 20 0.01043 0.01147 0.01254 0.38% FabArray::setDomainBndry() 41 0.007656 0.01075 0.0119 0.36% Amr::writePlotFile() 2 0.008054 0.011 0.01176 0.36% Castro::construct_old_gravity_source() 10 0.009578 0.01028 0.01088 0.33% Castro::initMFs() 1 0.006546 0.006959 0.007557 0.23% Castro::construct_new_source() 50 0.005762 0.006143 0.006342 0.19% main() 1 0.003906 0.004364 0.004736 0.14% Gravity::get_new_grav_vector() 11 0.003223 0.003733 0.004086 0.12% Gravity::get_old_grav_vector() 10 0.001813 0.002202 0.002798 0.09% Amr::coarseTimeStep() 10 0.001219 0.001528 0.001726 0.05% Castro::finalize_do_advance() 10 0.001228 0.001288 0.001504 0.05% AmrLevel::FillPatch() 41 0.0009082 0.001048 0.001132 0.03% Amr::timeStep() 10 0.0001672 0.0002143 0.0003646 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002724 0.0002791 0.0002874 0.01% Castro::do_advance_ctu() 10 0.0001364 0.0001512 0.0001804 0.01% Castro::clean_state() 62 0.0001463 0.0001587 0.0001741 0.01% FillPatchIterator::FillFromLevel0() 41 9.278e-05 0.0001024 0.0001227 0.00% Castro::do_old_sources() 10 7.567e-05 9.63e-05 0.0001224 0.00% FabArray::ParallelCopy() 41 7.953e-05 8.777e-05 0.0001068 0.00% Castro::Castro() 1 5.513e-05 7.722e-05 0.0001062 0.00% StateDataPhysBCFunct::() 41 9.774e-05 0.0001021 0.0001054 0.00% Castro::construct_old_source() 50 6.003e-05 7.477e-05 9.009e-05 0.00% Castro::subcycle_advance_ctu() 10 5.061e-05 5.891e-05 8.625e-05 0.00% Amr::FinalizeInit() 1 3.21e-06 1.437e-05 7.808e-05 0.00% Castro::do_new_sources() 10 4.479e-05 5.885e-05 7.18e-05 0.00% FillPatchSingleLevel 41 5.871e-05 6.374e-05 6.925e-05 0.00% Castro::advance() 10 4.052e-05 4.997e-05 5.802e-05 0.00% Castro::apply_source_to_state() 20 4.109e-05 4.793e-05 5.556e-05 0.00% Amr::defBaseLevel() 1 3.335e-05 4.112e-05 4.802e-05 0.00% Castro::construct_old_gravity() 10 3.161e-05 3.661e-05 4.371e-05 0.00% Castro::construct_new_gravity() 10 2.698e-05 3.287e-05 4.074e-05 0.00% Castro::expand_state() 10 2.05e-05 2.547e-05 3.204e-05 0.00% Castro::check_for_nan() 20 2.424e-05 2.592e-05 2.92e-05 0.00% Castro::post_timestep() 10 1.464e-05 1.651e-05 2.022e-05 0.00% Castro::post_init() 1 8.944e-06 1.039e-05 1.286e-05 0.00% Castro::computeNewDt() 9 9.239e-06 1.022e-05 1.101e-05 0.00% Amr::InitializeInit() 1 2.571e-06 3.525e-06 7.243e-06 0.00% Amr::init() 1 1.901e-06 2.63e-06 5.395e-06 0.00% Castro::computeInitialDt() 2 3.164e-06 3.91e-06 4.79e-06 0.00% Amr::initialInit() 1 1.583e-06 1.94e-06 2.538e-06 0.00% Other 261 0.01625 0.01877 0.02031 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.276 3.276 3.277 100.00% Amr::coarseTimeStep() 10 3.095 3.095 3.095 94.47% Amr::timeStep() 10 3.082 3.082 3.083 94.09% Castro::advance() 10 3.066 3.066 3.067 93.59% Castro::subcycle_advance_ctu() 10 2.987 2.99 2.993 91.34% Castro::do_advance_ctu() 10 2.987 2.99 2.993 91.34% Castro::construct_ctu_hydro_source() 10 2.241 2.244 2.249 68.64% Gravity::make_radial_gravity() 21 0.316 0.323 0.3276 10.00% Gravity::get_new_grav_vector() 11 0.2159 0.2175 0.2182 6.66% AmrLevel::FillPatch() 41 0.1918 0.2009 0.209 6.38% check_for_negative_density() 10 0.03053 0.09287 0.2072 6.32% Castro::construct_old_gravity() 10 0.1853 0.1898 0.1945 5.94% Gravity::get_old_grav_vector() 10 0.1845 0.1891 0.1937 5.91% Castro::construct_new_gravity() 10 0.1909 0.1921 0.1927 5.88% FillPatchIterator::Initialize 41 0.1596 0.1661 0.1724 5.26% Castro::initialize_do_advance() 10 0.1642 0.1674 0.1705 5.20% Amr::init() 1 0.1683 0.1685 0.1686 5.15% Amr::initialInit() 1 0.1522 0.1524 0.1526 4.66% FillPatchIterator::FillFromLevel0() 41 0.1135 0.1213 0.1267 3.87% FillPatchSingleLevel 41 0.1133 0.1212 0.1266 3.86% Amr::InitializeInit() 1 0.06007 0.09238 0.1229 3.75% Amr::defBaseLevel() 1 0.06007 0.09238 0.1229 3.75% Castro::clean_state() 62 0.1151 0.1164 0.118 3.60% Castro::expand_state() 10 0.108 0.112 0.1159 3.54% Castro::initData() 1 0.04185 0.0752 0.1053 3.21% Castro::do_old_sources() 10 0.09193 0.09675 0.1011 3.09% FabArray::ParallelCopy() 41 0.08106 0.08819 0.09711 2.96% Amr::FinalizeInit() 1 0.02954 0.06 0.09211 2.81% amrex::Copy() 193 0.07771 0.08446 0.09091 2.77% Castro::estTimeStep() 21 0.02777 0.05951 0.08868 2.71% Castro::initialize_advance() 10 0.07044 0.07264 0.07591 2.32% FabArray::setVal() 143 0.06724 0.07052 0.07393 2.26% Castro::do_new_sources() 10 0.06215 0.06562 0.07039 2.15% Castro::computeTemp() 63 0.06295 0.06466 0.06613 2.02% Castro::computeInitialDt() 2 0.002151 0.0327 0.06505 1.99% FabArray::ParallelCopy_finish() 41 0.03802 0.04589 0.05868 1.79% Castro::normalize_species() 62 0.04535 0.0462 0.0474 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04492 0.04631 0.04731 1.44% Castro::reset_internal_energy(Fab) 1008 0.04463 0.04604 0.04703 1.44% FabArray::ParallelCopy_nowait() 41 0.03835 0.04221 0.04372 1.33% StateDataPhysBCFunct::() 41 0.02939 0.03291 0.03555 1.08% StateData::FillBoundary(geom) 41 0.02929 0.03281 0.03545 1.08% Castro::construct_new_source() 50 0.02964 0.03084 0.03219 0.98% Gravity::interpolate_monopole_grav() 21 0.02707 0.02748 0.02795 0.85% Castro::post_init() 1 0.02648 0.02671 0.027 0.82% Castro::construct_new_gravity_source() 10 0.02343 0.0247 0.02643 0.81% Amr::writePlotFile() 2 0.02344 0.02384 0.02412 0.74% Castro::finalize_do_advance() 10 0.01332 0.01785 0.02183 0.67% Castro::post_timestep() 10 0.01578 0.01595 0.01638 0.50% Castro::apply_source_to_state() 20 0.01219 0.01328 0.01372 0.42% FabArray::Saxpy() 20 0.01215 0.01324 0.01367 0.42% VisMF::Write(FabArray) 2 0.009379 0.009915 0.01271 0.39% Castro::check_for_nan() 20 0.01045 0.01149 0.01257 0.38% MultiFab::contains_nan() 20 0.01043 0.01147 0.01254 0.38% FabArray::setDomainBndry() 41 0.007656 0.01075 0.0119 0.36% Castro::Castro() 1 0.009789 0.01095 0.01183 0.36% Castro::construct_old_source() 50 0.009638 0.01036 0.01096 0.33% Castro::construct_old_gravity_source() 10 0.009578 0.01028 0.01088 0.33% Castro::computeNewDt() 9 0.01025 0.01026 0.01027 0.31% Castro::initMFs() 1 0.006546 0.006959 0.007557 0.23% Other 261 0.02648 0.02994 0.03259 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6759 KiB 6766 KiB 6767 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4559 KiB 4561 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 231 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 245 KiB 251 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 84 KiB 85 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-25-gb98eaaf82c7c) finalized