Initializing AMReX (24.11-23-g456c93c7d951)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-23-g456c93c7d951) initialized Starting run at 06:39:09 UTC on 2024-11-18. Successfully read inputs file ... Castro git describe: 24.11-5-g2fb722878 AMReX git describe: 24.11-23-g456c93c7d Microphysics git describe: 24.11-1-ged9c7fb5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015901154 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.334136111 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.313745733 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312912356 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305600454 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350961954 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.293855616 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.283413617 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.282942083 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.282992707 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.28387566 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007760838 seconds Ending run at 06:39:12 UTC on 2024-11-18. Run time = 3.225314972 Run time without initialization = 3.05713758 Average number of zones advanced per microsecond: 0.857 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2248 ... 3.2251 ... 3.2254 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0556 2.1203 2.1594 66.95% Gravity::make_radial_gravity() 21 0.2916 0.2986 0.3065 9.50% check_for_negative_density() 10 0.02178 0.06272 0.1293 4.01% Castro::initData() 1 0.03691 0.07143 0.1015 3.15% Castro::estTimeStep() 21 0.02095 0.05582 0.09469 2.94% amrex::Copy() 193 0.07916 0.08361 0.09137 2.83% FabArray::setVal() 143 0.06762 0.07153 0.0765 2.37% FabArray::ParallelCopy_finish() 41 0.0372 0.04457 0.05021 1.56% Castro::reset_internal_energy(Fab) 1008 0.04194 0.04523 0.04769 1.48% Castro::normalize_species() 62 0.04487 0.04564 0.04632 1.44% FabArray::ParallelCopy_nowait() 41 0.03973 0.0422 0.04331 1.34% FillPatchIterator::Initialize 41 0.02922 0.03398 0.03594 1.11% StateData::FillBoundary(geom) 41 0.03058 0.03308 0.03525 1.09% Gravity::interpolate_monopole_grav() 21 0.02682 0.02735 0.02827 0.88% Castro::construct_new_gravity_source() 10 0.02334 0.0249 0.02618 0.81% Castro::initialize_do_advance() 10 0.01692 0.01812 0.0191 0.59% Castro::computeTemp() 63 0.01706 0.01814 0.01906 0.59% Castro::initialize_advance() 10 0.01055 0.01246 0.01463 0.45% FabArray::Saxpy() 20 0.01226 0.01338 0.01458 0.45% FabArray::setDomainBndry() 41 0.008749 0.01122 0.01367 0.42% VisMF::Write(FabArray) 2 0.009127 0.009721 0.01287 0.40% MultiFab::contains_nan() 20 0.01076 0.01158 0.01256 0.39% Amr::writePlotFile() 2 0.008398 0.01176 0.01242 0.39% Castro::construct_old_gravity_source() 10 0.01008 0.01042 0.01071 0.33% Castro::initMFs() 1 0.0063 0.006962 0.007522 0.23% Castro::construct_new_source() 50 0.005977 0.006194 0.006377 0.20% main() 1 0.003891 0.004206 0.004436 0.14% Gravity::get_new_grav_vector() 11 0.003211 0.003627 0.003975 0.12% Gravity::get_old_grav_vector() 10 0.001512 0.002151 0.002589 0.08% Amr::coarseTimeStep() 10 0.0007913 0.001476 0.002376 0.07% Castro::finalize_do_advance() 10 0.001235 0.001265 0.001321 0.04% AmrLevel::FillPatch() 41 0.0009756 0.001108 0.001229 0.04% Amr::timeStep() 10 0.0001765 0.0002124 0.0003814 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002654 0.0002826 0.0002978 0.01% Castro::clean_state() 62 0.0001447 0.0001575 0.0001772 0.01% Castro::do_advance_ctu() 10 0.0001513 0.0001608 0.000174 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001037 0.0001111 0.0001171 0.00% FabArray::ParallelCopy() 41 9.366e-05 9.977e-05 0.0001162 0.00% StateDataPhysBCFunct::() 41 9.714e-05 0.0001034 0.0001105 0.00% Castro::do_old_sources() 10 8.016e-05 9.605e-05 0.00011 0.00% Amr::FinalizeInit() 1 3.363e-06 1.606e-05 9.001e-05 0.00% Castro::construct_old_source() 50 6.541e-05 7.44e-05 8.282e-05 0.00% Castro::Castro() 1 5.621e-05 6.647e-05 7.382e-05 0.00% Castro::subcycle_advance_ctu() 10 4.249e-05 5.225e-05 7.073e-05 0.00% FillPatchSingleLevel 41 6.154e-05 6.59e-05 6.993e-05 0.00% Castro::do_new_sources() 10 5.495e-05 6.105e-05 6.536e-05 0.00% Castro::apply_source_to_state() 20 4.093e-05 4.982e-05 6.022e-05 0.00% Castro::advance() 10 3.865e-05 4.654e-05 5.491e-05 0.00% Amr::defBaseLevel() 1 3.114e-05 4.146e-05 5.12e-05 0.00% Castro::construct_old_gravity() 10 3.629e-05 3.895e-05 4.485e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.502e-05 4.258e-05 0.00% Castro::expand_state() 10 2.201e-05 2.643e-05 3.585e-05 0.00% Castro::check_for_nan() 20 2.635e-05 2.764e-05 3.011e-05 0.00% Castro::post_timestep() 10 1.46e-05 1.745e-05 2.206e-05 0.00% Castro::post_init() 1 8.778e-06 9.917e-06 1.173e-05 0.00% Castro::computeNewDt() 9 9.103e-06 9.943e-06 1.085e-05 0.00% Amr::initialInit() 1 1.424e-06 2.914e-06 8.648e-06 0.00% Amr::InitializeInit() 1 2.606e-06 3.597e-06 6.43e-06 0.00% Castro::computeInitialDt() 2 3.22e-06 3.858e-06 4.324e-06 0.00% Amr::init() 1 1.764e-06 2.287e-06 2.872e-06 0.00% Other 261 0.01613 0.0185 0.01999 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.225 3.225 3.225 100.00% Amr::coarseTimeStep() 10 3.045 3.045 3.045 94.41% Amr::timeStep() 10 3.033 3.034 3.035 94.09% Castro::advance() 10 3.018 3.018 3.018 93.58% Castro::subcycle_advance_ctu() 10 2.939 2.941 2.944 91.28% Castro::do_advance_ctu() 10 2.939 2.941 2.944 91.27% Castro::construct_ctu_hydro_source() 10 2.201 2.204 2.209 68.50% Gravity::make_radial_gravity() 21 0.3093 0.3157 0.3218 9.98% Gravity::get_new_grav_vector() 11 0.2084 0.2099 0.2117 6.56% AmrLevel::FillPatch() 41 0.1896 0.2003 0.2099 6.51% Castro::construct_old_gravity() 10 0.1858 0.1897 0.1958 6.07% Gravity::get_old_grav_vector() 10 0.1852 0.189 0.1951 6.05% Castro::construct_new_gravity() 10 0.1834 0.1844 0.1857 5.76% FillPatchIterator::Initialize 41 0.1599 0.1655 0.1733 5.37% Castro::initialize_do_advance() 10 0.1622 0.167 0.1697 5.26% Amr::init() 1 0.1676 0.1678 0.1678 5.20% Amr::initialInit() 1 0.1511 0.1513 0.1515 4.70% check_for_negative_density() 10 0.02178 0.06272 0.1293 4.01% FillPatchIterator::FillFromLevel0() 41 0.1125 0.1203 0.1255 3.89% FillPatchSingleLevel 41 0.1124 0.1202 0.1254 3.89% Amr::InitializeInit() 1 0.05808 0.09178 0.1219 3.78% Amr::defBaseLevel() 1 0.05808 0.09177 0.1219 3.78% Castro::clean_state() 62 0.1094 0.1147 0.1181 3.66% Castro::expand_state() 10 0.1057 0.1115 0.1151 3.57% Castro::initData() 1 0.04064 0.07505 0.1051 3.26% Castro::do_old_sources() 10 0.09312 0.09709 0.1012 3.14% Castro::estTimeStep() 21 0.02095 0.05582 0.09469 2.94% Amr::FinalizeInit() 1 0.02958 0.05954 0.09305 2.89% amrex::Copy() 193 0.07916 0.08361 0.09137 2.83% FabArray::ParallelCopy() 41 0.08004 0.08697 0.09061 2.81% FabArray::setVal() 143 0.06762 0.07153 0.0765 2.37% Castro::initialize_advance() 10 0.07073 0.07338 0.07611 2.36% Castro::do_new_sources() 10 0.06148 0.06612 0.07083 2.20% Castro::computeTemp() 63 0.05928 0.06365 0.06664 2.07% Castro::computeInitialDt() 2 0.002267 0.03238 0.06606 2.05% FabArray::ParallelCopy_finish() 41 0.0372 0.04457 0.05021 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04222 0.04551 0.04798 1.49% Castro::reset_internal_energy(Fab) 1008 0.04194 0.04523 0.04769 1.48% Castro::normalize_species() 62 0.04487 0.04564 0.04632 1.44% FabArray::ParallelCopy_nowait() 41 0.03985 0.0423 0.0434 1.35% StateDataPhysBCFunct::() 41 0.03068 0.03318 0.03536 1.10% StateData::FillBoundary(geom) 41 0.03058 0.03308 0.03525 1.09% Castro::construct_new_source() 50 0.02943 0.03109 0.0325 1.01% Gravity::interpolate_monopole_grav() 21 0.02682 0.02735 0.02827 0.88% Castro::post_init() 1 0.02652 0.02677 0.02707 0.84% Castro::construct_new_gravity_source() 10 0.02334 0.0249 0.02618 0.81% Amr::writePlotFile() 2 0.02395 0.02431 0.02451 0.76% Castro::finalize_do_advance() 10 0.01154 0.0163 0.02147 0.67% Castro::post_timestep() 10 0.01484 0.01557 0.0161 0.50% Castro::apply_source_to_state() 20 0.01231 0.01343 0.01463 0.45% FabArray::Saxpy() 20 0.01226 0.01338 0.01458 0.45% FabArray::setDomainBndry() 41 0.008749 0.01122 0.01367 0.42% VisMF::Write(FabArray) 2 0.009127 0.009721 0.01287 0.40% Castro::check_for_nan() 20 0.01079 0.01161 0.01258 0.39% MultiFab::contains_nan() 20 0.01076 0.01158 0.01256 0.39% Castro::Castro() 1 0.009543 0.01064 0.01144 0.35% Castro::construct_old_source() 50 0.01014 0.0105 0.01079 0.33% Castro::construct_old_gravity_source() 10 0.01008 0.01042 0.01071 0.33% Castro::computeNewDt() 9 0.00841 0.008418 0.008426 0.26% Castro::initMFs() 1 0.0063 0.006962 0.007522 0.23% Other 261 0.02604 0.02949 0.032 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6755 KiB 6762 KiB 6763 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4555 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 233 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 249 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-23-g456c93c7d951) finalized