Initializing AMReX (24.11-25-gb98eaaf82c7c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-25-gb98eaaf82c7c) initialized Starting run at 06:18:12 UTC on 2024-11-19. Successfully read inputs file ... Castro git describe: 24.11-6-g885e9c0cb AMReX git describe: 24.11-25-gb98eaaf82 Microphysics git describe: 24.11-1-ged9c7fb5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014626361 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.332501258 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333477504 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322006971 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320951612 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363711168 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.315194359 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299424634 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29738884 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298677273 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297214209 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008788245 seconds Ending run at 06:18:16 UTC on 2024-11-19. Run time = 3.377763954 Run time without initialization = 3.194913557 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3768 ... 3.3775 ... 3.3778 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0628 2.1490 2.2328 66.10% Gravity::make_radial_gravity() 21 0.3019 0.3129 0.3291 9.74% check_for_negative_density() 10 0.05114 0.1346 0.2255 6.68% Castro::initData() 1 0.03718 0.07609 0.1198 3.55% Castro::estTimeStep() 21 0.03813 0.07803 0.1194 3.53% FabArray::ParallelCopy_finish() 41 0.03753 0.05727 0.1047 3.10% amrex::Copy() 193 0.06239 0.08275 0.09344 2.77% FabArray::setVal() 143 0.05738 0.06641 0.074 2.19% Castro::normalize_species() 62 0.04546 0.04773 0.05081 1.50% Castro::reset_internal_energy(Fab) 1008 0.04307 0.04642 0.04929 1.46% FabArray::ParallelCopy_nowait() 41 0.03361 0.04266 0.04614 1.37% StateData::FillBoundary(geom) 41 0.03164 0.03423 0.04242 1.26% FillPatchIterator::Initialize 41 0.02727 0.03568 0.0384 1.14% Gravity::interpolate_monopole_grav() 21 0.0268 0.02742 0.02822 0.84% Castro::construct_new_gravity_source() 10 0.02333 0.02462 0.02591 0.77% Castro::initialize_do_advance() 10 0.01167 0.0181 0.02041 0.60% Castro::computeTemp() 63 0.01766 0.01865 0.02 0.59% Castro::initialize_advance() 10 0.006113 0.01067 0.01421 0.42% FabArray::Saxpy() 20 0.009789 0.01221 0.01402 0.42% FabArray::setDomainBndry() 41 0.007607 0.01147 0.01327 0.39% VisMF::Write(FabArray) 2 0.008888 0.009687 0.01308 0.39% Amr::writePlotFile() 2 0.007895 0.01099 0.01289 0.38% MultiFab::contains_nan() 20 0.01139 0.01211 0.01275 0.38% Castro::construct_old_gravity_source() 10 0.006436 0.009177 0.01038 0.31% Castro::initMFs() 1 0.006314 0.006982 0.007797 0.23% Castro::construct_new_source() 50 0.005524 0.006237 0.006742 0.20% main() 1 0.004066 0.004771 0.00516 0.15% Gravity::get_new_grav_vector() 11 0.002972 0.003583 0.004089 0.12% Amr::coarseTimeStep() 10 0.001375 0.002946 0.003822 0.11% Gravity::get_old_grav_vector() 10 0.001602 0.002336 0.002735 0.08% Castro::finalize_do_advance() 10 0.0004948 0.0009495 0.001032 0.03% AmrLevel::FillPatch() 41 0.000727 0.0008064 0.0008453 0.03% Amr::timeStep() 10 0.0001538 0.0002183 0.0003962 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0003013 0.0003351 0.01% Castro::do_advance_ctu() 10 0.00014 0.0001638 0.0001844 0.01% Castro::clean_state() 62 0.0001476 0.000168 0.0001814 0.01% FillPatchIterator::FillFromLevel0() 41 9.569e-05 0.0001076 0.0001241 0.00% StateDataPhysBCFunct::() 41 9.392e-05 0.0001061 0.0001215 0.00% Castro::do_old_sources() 10 6.878e-05 9.626e-05 0.0001128 0.00% FabArray::ParallelCopy() 41 7.849e-05 9.342e-05 0.0001019 0.00% Castro::construct_old_source() 50 4.59e-05 7.264e-05 8.829e-05 0.00% Castro::Castro() 1 5.587e-05 6.283e-05 7.822e-05 0.00% Amr::FinalizeInit() 1 3.75e-06 1.341e-05 7.738e-05 0.00% Castro::do_new_sources() 10 4.834e-05 6.065e-05 7.512e-05 0.00% FillPatchSingleLevel 41 6.062e-05 6.589e-05 7.226e-05 0.00% Amr::defBaseLevel() 1 2.787e-05 4.369e-05 6.238e-05 0.00% Castro::subcycle_advance_ctu() 10 4.145e-05 5.36e-05 6.035e-05 0.00% Castro::advance() 10 3.858e-05 4.922e-05 5.905e-05 0.00% Castro::apply_source_to_state() 20 3.693e-05 4.777e-05 5.349e-05 0.00% Castro::construct_new_gravity() 10 3.174e-05 3.699e-05 4.542e-05 0.00% Castro::construct_old_gravity() 10 3.138e-05 3.966e-05 4.48e-05 0.00% Castro::expand_state() 10 1.983e-05 2.701e-05 3.392e-05 0.00% Castro::check_for_nan() 20 2.714e-05 2.984e-05 3.199e-05 0.00% Castro::post_timestep() 10 1.479e-05 1.721e-05 2.121e-05 0.00% Castro::computeNewDt() 9 9.315e-06 1.073e-05 1.249e-05 0.00% Castro::post_init() 1 8.371e-06 9.666e-06 1.19e-05 0.00% Amr::initialInit() 1 1.61e-06 2.704e-06 8.572e-06 0.00% Amr::InitializeInit() 1 2.686e-06 3.501e-06 5.782e-06 0.00% Castro::computeInitialDt() 2 3.067e-06 3.526e-06 3.722e-06 0.00% Amr::init() 1 1.678e-06 1.999e-06 2.421e-06 0.00% Other 261 0.01571 0.01813 0.02013 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.377 3.377 3.378 100.00% Amr::coarseTimeStep() 10 3.181 3.181 3.181 94.18% Amr::timeStep() 10 3.167 3.168 3.169 93.82% Castro::advance() 10 3.151 3.151 3.152 93.30% Castro::subcycle_advance_ctu() 10 3.073 3.079 3.09 91.48% Castro::do_advance_ctu() 10 3.072 3.079 3.09 91.48% Castro::construct_ctu_hydro_source() 10 2.301 2.305 2.311 68.42% Gravity::make_radial_gravity() 21 0.3189 0.3295 0.3408 10.09% AmrLevel::FillPatch() 41 0.2071 0.2153 0.2298 6.80% check_for_negative_density() 10 0.05114 0.1346 0.2255 6.68% Gravity::get_new_grav_vector() 11 0.2175 0.2192 0.2208 6.54% Castro::construct_old_gravity() 10 0.1885 0.1974 0.207 6.13% Gravity::get_old_grav_vector() 10 0.1878 0.1967 0.2064 6.11% FillPatchIterator::Initialize 41 0.1699 0.1818 0.206 6.10% Castro::construct_new_gravity() 10 0.1957 0.1969 0.1981 5.87% Amr::init() 1 0.1823 0.1825 0.1825 5.40% Castro::initialize_do_advance() 10 0.1682 0.1738 0.1786 5.29% FillPatchIterator::FillFromLevel0() 41 0.1188 0.1346 0.1711 5.06% FillPatchSingleLevel 41 0.1186 0.1345 0.171 5.06% Amr::initialInit() 1 0.1672 0.1678 0.1685 4.99% Amr::InitializeInit() 1 0.05816 0.09652 0.1416 4.19% Amr::defBaseLevel() 1 0.05815 0.09651 0.1416 4.19% FabArray::ParallelCopy() 41 0.08214 0.1001 0.1385 4.10% Castro::expand_state() 10 0.1122 0.1179 0.1272 3.77% Castro::clean_state() 62 0.1119 0.1185 0.1257 3.72% Castro::initData() 1 0.04072 0.07994 0.1238 3.67% Castro::estTimeStep() 21 0.03813 0.07803 0.1194 3.53% Amr::FinalizeInit() 1 0.02557 0.07125 0.1095 3.24% Castro::do_old_sources() 10 0.09746 0.1014 0.1063 3.15% FabArray::ParallelCopy_finish() 41 0.03753 0.05727 0.1047 3.10% amrex::Copy() 193 0.06239 0.08275 0.09344 2.77% Castro::computeInitialDt() 2 0.00212 0.04722 0.08559 2.53% Castro::initialize_advance() 10 0.05703 0.06851 0.07519 2.23% FabArray::setVal() 143 0.05738 0.06641 0.074 2.19% Castro::do_new_sources() 10 0.05994 0.06485 0.07105 2.10% Castro::computeTemp() 63 0.061 0.06536 0.06963 2.06% Castro::normalize_species() 62 0.04546 0.04773 0.05081 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04334 0.04672 0.04963 1.47% Castro::reset_internal_energy(Fab) 1008 0.04307 0.04642 0.04929 1.46% FabArray::ParallelCopy_nowait() 41 0.0337 0.04275 0.04624 1.37% StateDataPhysBCFunct::() 41 0.03173 0.03433 0.04252 1.26% StateData::FillBoundary(geom) 41 0.03164 0.03423 0.04242 1.26% Castro::construct_new_source() 50 0.02885 0.03085 0.03234 0.96% Gravity::interpolate_monopole_grav() 21 0.0268 0.02742 0.02822 0.84% Castro::finalize_do_advance() 10 0.01536 0.02228 0.02704 0.80% Castro::construct_new_gravity_source() 10 0.02333 0.02462 0.02591 0.77% Amr::writePlotFile() 2 0.02281 0.02356 0.02413 0.71% Castro::post_init() 1 0.02287 0.02345 0.02401 0.71% Castro::post_timestep() 10 0.01514 0.01623 0.01791 0.53% Castro::apply_source_to_state() 20 0.009826 0.01226 0.01407 0.42% FabArray::Saxpy() 20 0.009789 0.01221 0.01402 0.42% FabArray::setDomainBndry() 41 0.007607 0.01147 0.01327 0.39% VisMF::Write(FabArray) 2 0.008888 0.009687 0.01308 0.39% Castro::check_for_nan() 20 0.01142 0.01214 0.01278 0.38% MultiFab::contains_nan() 20 0.01139 0.01211 0.01275 0.38% Castro::Castro() 1 0.009849 0.01069 0.01153 0.34% Castro::construct_old_source() 50 0.006482 0.00925 0.01045 0.31% Castro::construct_old_gravity_source() 10 0.006436 0.009177 0.01038 0.31% Castro::computeNewDt() 9 0.009468 0.009481 0.009495 0.28% Castro::initMFs() 1 0.006314 0.006982 0.007797 0.23% Other 261 0.02562 0.02904 0.03207 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6741 KiB 6748 KiB 6752 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4545 KiB 4554 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 229 KiB 239 KiB 257 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 240 KiB 248 KiB 257 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 45 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-25-gb98eaaf82c7c) finalized