Initializing AMReX (24.11-25-gb98eaaf82c7c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-25-gb98eaaf82c7c) initialized Starting run at 06:18:23 UTC on 2024-11-20. Successfully read inputs file ... Castro git describe: 24.11-7-g1a22b17c5 AMReX git describe: 24.11-25-gb98eaaf82 Microphysics git describe: 24.11-1-ged9c7fb5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014648553 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337297339 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327494223 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317298663 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311526865 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.354307268 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30028002 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.287877847 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.289188606 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300217395 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.32146056 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009383065 seconds Ending run at 06:18:27 UTC on 2024-11-20. Run time = 3.349689743 Run time without initialization = 3.161152539 Average number of zones advanced per microsecond: 0.829 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3495 ... 3.3496 ... 3.3497 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0612 2.1390 2.2091 65.95% Gravity::make_radial_gravity() 21 0.2936 0.3008 0.3089 9.22% check_for_negative_density() 10 0.04738 0.1204 0.2014 6.01% Castro::initData() 1 0.03815 0.07386 0.1225 3.66% Castro::estTimeStep() 21 0.03068 0.08024 0.119 3.55% amrex::Copy() 193 0.07917 0.08573 0.09317 2.78% FabArray::setVal() 143 0.06914 0.07253 0.07798 2.33% FabArray::ParallelCopy_finish() 41 0.04154 0.05027 0.06208 1.85% Castro::normalize_species() 62 0.04635 0.0525 0.05666 1.69% Castro::reset_internal_energy(Fab) 1008 0.04145 0.0451 0.04882 1.46% FabArray::ParallelCopy_nowait() 41 0.04084 0.04247 0.04385 1.31% StateData::FillBoundary(geom) 41 0.03019 0.0331 0.0359 1.07% FillPatchIterator::Initialize 41 0.02898 0.03367 0.03557 1.06% Gravity::interpolate_monopole_grav() 21 0.02681 0.02736 0.02811 0.84% Castro::construct_new_gravity_source() 10 0.02475 0.02571 0.02654 0.79% Castro::computeTemp() 63 0.01733 0.01845 0.01991 0.59% Castro::initialize_do_advance() 10 0.01617 0.01814 0.01961 0.59% Castro::initialize_advance() 10 0.01131 0.01317 0.01498 0.45% FabArray::Saxpy() 20 0.01261 0.01355 0.01468 0.44% MultiFab::contains_nan() 20 0.0111 0.01203 0.01298 0.39% VisMF::Write(FabArray) 2 0.00928 0.009867 0.01253 0.37% FabArray::setDomainBndry() 41 0.008264 0.01047 0.01232 0.37% Amr::writePlotFile() 2 0.007826 0.01092 0.01179 0.35% Castro::construct_old_gravity_source() 10 0.009949 0.01069 0.0116 0.35% Castro::initMFs() 1 0.006256 0.006808 0.008283 0.25% Castro::construct_new_source() 50 0.006279 0.006572 0.007105 0.21% Amr::coarseTimeStep() 10 0.001882 0.003385 0.005084 0.15% main() 1 0.004134 0.004243 0.004387 0.13% Gravity::get_new_grav_vector() 11 0.003109 0.00341 0.003917 0.12% Gravity::get_old_grav_vector() 10 0.001794 0.00225 0.002716 0.08% Castro::finalize_do_advance() 10 0.001218 0.001245 0.001276 0.04% AmrLevel::FillPatch() 41 0.0008776 0.001047 0.001165 0.03% Amr::timeStep() 10 0.0001735 0.00023 0.0004511 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002906 0.0003075 0.0003229 0.01% Castro::do_advance_ctu() 10 0.0001455 0.00017 0.0002042 0.01% Castro::clean_state() 62 0.000155 0.0001731 0.0001968 0.01% StateDataPhysBCFunct::() 41 0.0001033 0.0001124 0.0001354 0.00% Castro::do_old_sources() 10 9.175e-05 0.0001007 0.0001181 0.00% FillPatchIterator::FillFromLevel0() 41 9.726e-05 0.0001065 0.0001126 0.00% Amr::FinalizeInit() 1 3.979e-06 1.935e-05 0.0001088 0.00% FabArray::ParallelCopy() 41 9.294e-05 9.935e-05 0.0001059 0.00% Castro::Castro() 1 5.261e-05 7.552e-05 9.754e-05 0.00% Castro::construct_old_source() 50 6.956e-05 8.193e-05 9.375e-05 0.00% FillPatchSingleLevel 41 6.204e-05 6.944e-05 8.292e-05 0.00% Castro::do_new_sources() 10 5.521e-05 6.364e-05 7.134e-05 0.00% Castro::subcycle_advance_ctu() 10 5e-05 5.545e-05 6.506e-05 0.00% Castro::construct_old_gravity() 10 3.497e-05 4.159e-05 5.861e-05 0.00% Castro::apply_source_to_state() 20 4.262e-05 5.247e-05 5.852e-05 0.00% Castro::advance() 10 4.515e-05 4.848e-05 5.444e-05 0.00% Amr::defBaseLevel() 1 2.648e-05 3.877e-05 4.806e-05 0.00% Castro::construct_new_gravity() 10 3.028e-05 3.7e-05 4.162e-05 0.00% Castro::expand_state() 10 2.443e-05 2.785e-05 3.919e-05 0.00% Castro::check_for_nan() 20 2.59e-05 2.769e-05 2.914e-05 0.00% Castro::post_timestep() 10 1.56e-05 1.803e-05 2.262e-05 0.00% Castro::post_init() 1 8.035e-06 1.047e-05 1.977e-05 0.00% Castro::computeNewDt() 9 9.796e-06 1.067e-05 1.136e-05 0.00% Amr::InitializeInit() 1 2.421e-06 3.161e-06 5.628e-06 0.00% Castro::computeInitialDt() 2 3.587e-06 3.795e-06 4e-06 0.00% Amr::init() 1 1.781e-06 2.245e-06 3.185e-06 0.00% Amr::initialInit() 1 1.463e-06 1.782e-06 2.35e-06 0.00% Other 261 0.01626 0.01855 0.0204 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.349 3.35 3.35 100.00% Amr::coarseTimeStep() 10 3.147 3.147 3.147 93.96% Amr::timeStep() 10 3.133 3.134 3.136 93.62% Castro::advance() 10 3.117 3.117 3.117 93.06% Castro::subcycle_advance_ctu() 10 3.033 3.037 3.041 90.77% Castro::do_advance_ctu() 10 3.033 3.037 3.04 90.77% Castro::construct_ctu_hydro_source() 10 2.279 2.282 2.285 68.23% Gravity::make_radial_gravity() 21 0.3097 0.3176 0.3249 9.70% Gravity::get_new_grav_vector() 11 0.2112 0.2134 0.215 6.42% AmrLevel::FillPatch() 41 0.1958 0.206 0.21 6.27% check_for_negative_density() 10 0.04738 0.1204 0.2014 6.01% Castro::construct_old_gravity() 10 0.1854 0.1902 0.1953 5.83% Gravity::get_old_grav_vector() 10 0.1847 0.1895 0.1946 5.81% Castro::construct_new_gravity() 10 0.1866 0.1887 0.1903 5.68% Amr::init() 1 0.1879 0.1881 0.1882 5.62% FillPatchIterator::Initialize 41 0.1641 0.1705 0.1741 5.20% Amr::initialInit() 1 0.173 0.1733 0.1734 5.18% Castro::initialize_do_advance() 10 0.1648 0.1689 0.1727 5.16% Amr::InitializeInit() 1 0.05761 0.09432 0.1443 4.31% Amr::defBaseLevel() 1 0.0576 0.09432 0.1443 4.31% FillPatchIterator::FillFromLevel0() 41 0.1211 0.1263 0.1355 4.04% FillPatchSingleLevel 41 0.121 0.1262 0.1354 4.04% Castro::clean_state() 62 0.1132 0.122 0.1292 3.86% Castro::initData() 1 0.04189 0.07781 0.1263 3.77% Castro::estTimeStep() 21 0.03068 0.08024 0.119 3.55% Castro::expand_state() 10 0.1097 0.1135 0.1169 3.49% Amr::FinalizeInit() 1 0.02908 0.07901 0.1158 3.46% Castro::do_old_sources() 10 0.09659 0.1009 0.1039 3.10% FabArray::ParallelCopy() 41 0.08489 0.09294 0.1031 3.08% amrex::Copy() 193 0.07917 0.08573 0.09317 2.78% Castro::computeInitialDt() 2 0.002363 0.05232 0.08911 2.66% Castro::initialize_advance() 10 0.07295 0.07628 0.08024 2.40% FabArray::setVal() 143 0.06914 0.07253 0.07798 2.33% Castro::do_new_sources() 10 0.06548 0.06877 0.07212 2.15% Castro::computeTemp() 63 0.05908 0.06386 0.06836 2.04% FabArray::ParallelCopy_finish() 41 0.04154 0.05027 0.06208 1.85% Castro::normalize_species() 62 0.04635 0.0525 0.05666 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04175 0.04541 0.04914 1.47% Castro::reset_internal_energy(Fab) 1008 0.04145 0.0451 0.04882 1.46% FabArray::ParallelCopy_nowait() 41 0.04094 0.04257 0.04393 1.31% StateDataPhysBCFunct::() 41 0.03032 0.03321 0.03601 1.07% StateData::FillBoundary(geom) 41 0.03019 0.0331 0.0359 1.07% Castro::construct_new_source() 50 0.03103 0.03228 0.033 0.99% Gravity::interpolate_monopole_grav() 21 0.02681 0.02736 0.02811 0.84% Castro::construct_new_gravity_source() 10 0.02475 0.02571 0.02654 0.79% Castro::post_init() 1 0.02564 0.02599 0.02628 0.78% Castro::finalize_do_advance() 10 0.01674 0.02057 0.02469 0.74% Amr::writePlotFile() 2 0.02422 0.02427 0.02441 0.73% Castro::post_timestep() 10 0.01521 0.01711 0.01875 0.56% Castro::apply_source_to_state() 20 0.01265 0.0136 0.01473 0.44% FabArray::Saxpy() 20 0.01261 0.01355 0.01468 0.44% Castro::check_for_nan() 20 0.01113 0.01206 0.01301 0.39% MultiFab::contains_nan() 20 0.0111 0.01203 0.01298 0.39% VisMF::Write(FabArray) 2 0.00928 0.009867 0.01253 0.37% FabArray::setDomainBndry() 41 0.008264 0.01047 0.01232 0.37% Castro::construct_old_source() 50 0.01002 0.01077 0.01169 0.35% Castro::construct_old_gravity_source() 10 0.009949 0.01069 0.0116 0.35% Castro::Castro() 1 0.01016 0.01071 0.01148 0.34% Castro::computeNewDt() 9 0.008586 0.0086 0.008616 0.26% Castro::initMFs() 1 0.006256 0.006808 0.008283 0.25% Other 261 0.02634 0.02962 0.0327 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6726 KiB 6733 KiB 6734 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4524 KiB 4529 KiB 4535 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 230 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2787 KiB 2791 KiB 2791 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 241 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-25-gb98eaaf82c7c) finalized