Initializing AMReX (24.11-27-gc9546cd5f133)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-27-gc9546cd5f133) initialized Starting run at 13:58:47 UTC on 2024-11-21. Successfully read inputs file ... Castro git describe: 24.11-10-g04ab23979 AMReX git describe: 24.11-27-gc9546cd5f Microphysics git describe: 24.11-2-g8cb64e74 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014529367 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337902997 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.315657835 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.308998897 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311770688 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359956864 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314752148 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301826619 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305490439 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.311678162 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306387323 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00899008 seconds Ending run at 13:58:50 UTC on 2024-11-21. Run time = 3.367231822 Run time without initialization = 3.189841449 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3664 ... 3.3669 ... 3.3673 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0290 2.1429 2.2340 66.34% Gravity::make_radial_gravity() 21 0.312 0.3251 0.3398 10.09% check_for_negative_density() 10 0.03569 0.1313 0.2512 7.46% Castro::estTimeStep() 21 0.04287 0.07779 0.1245 3.70% Castro::initData() 1 0.04464 0.0782 0.1138 3.38% FabArray::ParallelCopy_finish() 41 0.04283 0.05613 0.1066 3.17% amrex::Copy() 193 0.05915 0.07399 0.08268 2.46% FabArray::setVal() 143 0.04258 0.06619 0.07502 2.23% Castro::reset_internal_energy(Fab) 1008 0.0422 0.04734 0.05306 1.58% Castro::normalize_species() 62 0.04542 0.04758 0.05161 1.53% FabArray::ParallelCopy_nowait() 41 0.03266 0.04065 0.04328 1.29% StateData::FillBoundary(geom) 41 0.02996 0.03349 0.03694 1.10% FillPatchIterator::Initialize 41 0.02714 0.03167 0.03491 1.04% Castro::construct_new_gravity_source() 10 0.02048 0.02492 0.03243 0.96% Gravity::interpolate_monopole_grav() 21 0.0272 0.02797 0.03017 0.90% Castro::computeTemp() 63 0.01755 0.01886 0.0208 0.62% Castro::initialize_do_advance() 10 0.01155 0.01532 0.01715 0.51% FabArray::Saxpy() 20 0.008562 0.01295 0.01448 0.43% MultiFab::contains_nan() 20 0.01083 0.0122 0.01425 0.42% VisMF::Write(FabArray) 2 0.00929 0.01001 0.01382 0.41% Castro::initialize_advance() 10 0.004967 0.01218 0.01375 0.41% FabArray::setDomainBndry() 41 0.007041 0.009776 0.01202 0.36% Amr::writePlotFile() 2 0.008166 0.01049 0.01114 0.33% Castro::construct_old_gravity_source() 10 0.005613 0.0093 0.01069 0.32% Castro::initMFs() 1 0.006477 0.007329 0.007887 0.23% Castro::construct_new_source() 50 0.004718 0.006038 0.006715 0.20% main() 1 0.00507 0.005587 0.006004 0.18% Amr::coarseTimeStep() 10 0.001656 0.003802 0.005626 0.17% Gravity::get_new_grav_vector() 11 0.002883 0.003414 0.003843 0.11% Gravity::get_old_grav_vector() 10 0.001632 0.001927 0.002204 0.07% AmrLevel::FillPatch() 41 0.0007977 0.0009117 0.001139 0.03% Castro::finalize_do_advance() 10 0.0004612 0.0009072 0.001087 0.03% Amr::timeStep() 10 0.0001612 0.0002318 0.000528 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002911 0.0003147 0.0003873 0.01% Castro::do_advance_ctu() 10 0.0001466 0.0001685 0.0001978 0.01% Castro::clean_state() 62 0.0001432 0.0001587 0.0001775 0.01% FillPatchIterator::FillFromLevel0() 41 9.221e-05 0.0001148 0.0001573 0.00% FabArray::ParallelCopy() 41 8.512e-05 9.389e-05 0.0001099 0.00% Castro::do_old_sources() 10 8.323e-05 9.574e-05 0.0001096 0.00% StateDataPhysBCFunct::() 41 9.352e-05 9.811e-05 0.0001069 0.00% Castro::Castro() 1 6.333e-05 8.1e-05 9.587e-05 0.00% Castro::construct_old_source() 50 5.631e-05 7.207e-05 8.928e-05 0.00% FillPatchSingleLevel 41 6.21e-05 6.817e-05 7.913e-05 0.00% Castro::do_new_sources() 10 5.44e-05 6.156e-05 7.478e-05 0.00% Amr::FinalizeInit() 1 3.408e-06 1.237e-05 6.67e-05 0.00% Castro::advance() 10 4.102e-05 4.866e-05 6.065e-05 0.00% Castro::subcycle_advance_ctu() 10 4.971e-05 5.522e-05 5.913e-05 0.00% Castro::apply_source_to_state() 20 4.458e-05 4.883e-05 5.369e-05 0.00% Castro::construct_old_gravity() 10 3.663e-05 3.981e-05 4.404e-05 0.00% Castro::construct_new_gravity() 10 3.137e-05 3.789e-05 4.353e-05 0.00% Amr::defBaseLevel() 1 3.299e-05 3.838e-05 4.351e-05 0.00% Castro::check_for_nan() 20 2.367e-05 2.795e-05 3.156e-05 0.00% Castro::expand_state() 10 2.309e-05 2.52e-05 2.783e-05 0.00% Castro::post_timestep() 10 1.461e-05 1.666e-05 1.94e-05 0.00% Castro::post_init() 1 8.545e-06 1.103e-05 1.608e-05 0.00% Castro::computeNewDt() 9 9.098e-06 1.021e-05 1.085e-05 0.00% Amr::InitializeInit() 1 2.726e-06 3.947e-06 6.865e-06 0.00% Castro::computeInitialDt() 2 3.005e-06 3.734e-06 4.449e-06 0.00% Amr::init() 1 1.79e-06 2.339e-06 3.392e-06 0.00% Amr::initialInit() 1 1.29e-06 1.696e-06 2.138e-06 0.00% Other 261 0.01512 0.01876 0.02019 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.366 3.367 3.367 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 94.29% Amr::timeStep() 10 3.158 3.159 3.162 93.89% Castro::advance() 10 3.141 3.143 3.143 93.35% Castro::subcycle_advance_ctu() 10 3.06 3.068 3.094 91.90% Castro::do_advance_ctu() 10 3.06 3.068 3.094 91.89% Castro::construct_ctu_hydro_source() 10 2.292 2.296 2.301 68.34% Gravity::make_radial_gravity() 21 0.3288 0.3403 0.3519 10.45% check_for_negative_density() 10 0.03569 0.1313 0.2512 7.46% AmrLevel::FillPatch() 41 0.1873 0.2019 0.2356 7.00% Gravity::get_new_grav_vector() 11 0.2178 0.2198 0.2217 6.58% Castro::construct_old_gravity() 10 0.195 0.2045 0.2132 6.33% Gravity::get_old_grav_vector() 10 0.1944 0.2038 0.2126 6.31% FillPatchIterator::Initialize 41 0.1594 0.1722 0.2112 6.27% Castro::construct_new_gravity() 10 0.1955 0.1971 0.1983 5.89% Castro::initialize_do_advance() 10 0.1544 0.1636 0.1813 5.38% Amr::init() 1 0.1768 0.177 0.177 5.26% FillPatchIterator::FillFromLevel0() 41 0.122 0.1307 0.1708 5.07% FillPatchSingleLevel 41 0.1219 0.1306 0.1707 5.07% Amr::initialInit() 1 0.1621 0.1627 0.1628 4.84% FabArray::ParallelCopy() 41 0.08631 0.09697 0.1395 4.14% Amr::InitializeInit() 1 0.06386 0.09942 0.1359 4.04% Amr::defBaseLevel() 1 0.06385 0.09941 0.1359 4.04% Castro::expand_state() 10 0.1016 0.1105 0.1341 3.98% Castro::clean_state() 62 0.1113 0.1195 0.1317 3.91% Castro::estTimeStep() 21 0.04287 0.07779 0.1245 3.70% Castro::initData() 1 0.04782 0.08197 0.1175 3.49% FabArray::ParallelCopy_finish() 41 0.04283 0.05613 0.1066 3.17% Castro::do_old_sources() 10 0.09409 0.09746 0.1001 2.97% Amr::FinalizeInit() 1 0.02687 0.06326 0.09822 2.92% amrex::Copy() 193 0.05915 0.07399 0.08268 2.46% Castro::initialize_advance() 10 0.04456 0.07175 0.07915 2.35% Castro::do_new_sources() 10 0.05362 0.0645 0.07817 2.32% FabArray::setVal() 143 0.04258 0.06619 0.07502 2.23% Castro::computeTemp() 63 0.06008 0.06651 0.07424 2.20% Castro::computeInitialDt() 2 0.002104 0.03858 0.07395 2.20% Castro::reset_internal_energy(MultiFab) 63 0.04253 0.04765 0.05345 1.59% Castro::reset_internal_energy(Fab) 1008 0.0422 0.04734 0.05306 1.58% Castro::normalize_species() 62 0.04542 0.04758 0.05161 1.53% FabArray::ParallelCopy_nowait() 41 0.03279 0.04074 0.04337 1.29% Castro::finalize_do_advance() 10 0.0145 0.02949 0.04044 1.20% Castro::construct_new_source() 50 0.0252 0.03096 0.03915 1.16% StateDataPhysBCFunct::() 41 0.03006 0.03359 0.03704 1.10% StateData::FillBoundary(geom) 41 0.02996 0.03349 0.03694 1.10% Castro::construct_new_gravity_source() 10 0.02048 0.02492 0.03243 0.96% Gravity::interpolate_monopole_grav() 21 0.0272 0.02797 0.03017 0.90% Castro::post_init() 1 0.02375 0.02409 0.02423 0.72% Amr::writePlotFile() 2 0.02326 0.02338 0.02378 0.71% Castro::post_timestep() 10 0.01569 0.01648 0.0188 0.56% Castro::apply_source_to_state() 20 0.008608 0.013 0.01453 0.43% FabArray::Saxpy() 20 0.008562 0.01295 0.01448 0.43% Castro::check_for_nan() 20 0.01085 0.01223 0.01428 0.42% MultiFab::contains_nan() 20 0.01083 0.0122 0.01425 0.42% VisMF::Write(FabArray) 2 0.00929 0.01001 0.01382 0.41% Castro::Castro() 1 0.009114 0.01109 0.01209 0.36% FabArray::setDomainBndry() 41 0.007041 0.009776 0.01202 0.36% Castro::construct_old_source() 50 0.005676 0.009372 0.01078 0.32% Castro::construct_old_gravity_source() 10 0.005613 0.0093 0.01069 0.32% Castro::computeNewDt() 9 0.01062 0.01064 0.01065 0.32% Castro::initMFs() 1 0.006477 0.007329 0.007887 0.23% Other 261 0.02435 0.03 0.03244 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8666 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6753 KiB 6758 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4541 KiB 4551 KiB 4587 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 224 KiB 267 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 249 KiB 257 KiB 266 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 77 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-27-gc9546cd5f133) finalized