Initializing AMReX (24.11-29-g12d6af2f76ec)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-29-g12d6af2f76ec) initialized Starting run at 06:23:10 UTC on 2024-11-22. Successfully read inputs file ... Castro git describe: 24.11-9-gf02444dc6 AMReX git describe: 24.11-29-g12d6af2f7 Microphysics git describe: 24.11-2-g8cb64e74 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020689252 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.406050102 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.380730196 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.366461737 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.376481484 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356459157 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.355977587 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.374441065 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.347163614 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.358260379 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.364045354 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012524063 seconds Ending run at 06:23:14 UTC on 2024-11-22. Run time = 3.9064773 Run time without initialization = 3.707454221 Average number of zones advanced per microsecond: 0.707 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9050 ... 3.9058 ... 3.9065 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1649 2.3996 2.5657 65.68% check_for_negative_density() 10 0.05567 0.2243 0.4679 11.98% Gravity::make_radial_gravity() 21 0.2975 0.3129 0.342 8.76% amrex::Copy() 193 0.09259 0.1186 0.1315 3.37% Castro::initData() 1 0.03758 0.07401 0.1153 2.95% FabArray::setVal() 143 0.09236 0.1025 0.1072 2.74% Castro::estTimeStep() 21 0.03299 0.06782 0.1053 2.70% FabArray::ParallelCopy_finish() 41 0.057 0.06499 0.08928 2.29% FabArray::ParallelCopy_nowait() 41 0.05293 0.06172 0.06579 1.68% FillPatchIterator::Initialize 41 0.04832 0.0556 0.06017 1.54% Castro::reset_internal_energy(Fab) 1008 0.04774 0.05117 0.05365 1.37% Castro::normalize_species() 62 0.04562 0.04744 0.04913 1.26% StateData::FillBoundary(geom) 41 0.03394 0.04042 0.04639 1.19% Castro::construct_new_gravity_source() 10 0.02991 0.03253 0.03521 0.90% Gravity::interpolate_monopole_grav() 21 0.02713 0.02771 0.02813 0.72% Castro::initialize_do_advance() 10 0.02397 0.02623 0.0281 0.72% FabArray::Saxpy() 20 0.01907 0.0198 0.02121 0.54% FabArray::setDomainBndry() 41 0.01829 0.01981 0.02102 0.54% Amr::writePlotFile() 2 0.01064 0.01469 0.02057 0.53% Castro::computeTemp() 63 0.01824 0.01999 0.02053 0.53% VisMF::Write(FabArray) 2 0.01043 0.01361 0.01756 0.45% Castro::initialize_advance() 10 0.01479 0.01607 0.01694 0.43% Castro::construct_old_gravity_source() 10 0.01435 0.0158 0.01661 0.43% MultiFab::contains_nan() 20 0.01286 0.01431 0.0154 0.39% Castro::initMFs() 1 0.008774 0.009514 0.01115 0.29% Castro::construct_new_source() 50 0.007289 0.008186 0.008924 0.23% main() 1 0.006801 0.007642 0.008316 0.21% Gravity::get_new_grav_vector() 11 0.004354 0.005417 0.006078 0.16% Gravity::get_old_grav_vector() 10 0.002846 0.003079 0.003347 0.09% Amr::coarseTimeStep() 10 0.001157 0.001728 0.002664 0.07% AmrLevel::FillPatch() 41 0.001049 0.001255 0.001449 0.04% Castro::finalize_do_advance() 10 0.001223 0.001316 0.001385 0.04% Amr::timeStep() 10 0.0001956 0.0002531 0.0004775 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003393 0.0003543 0.0003815 0.01% Castro::do_advance_ctu() 10 0.0001775 0.0002048 0.0002276 0.01% Castro::clean_state() 62 0.0001942 0.0002087 0.0002226 0.01% Castro::Castro() 1 7.596e-05 0.0001385 0.0001819 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001431 0.000153 0.0001654 0.00% StateDataPhysBCFunct::() 41 0.0001106 0.0001383 0.0001519 0.00% Castro::do_old_sources() 10 0.0001146 0.0001314 0.0001494 0.00% FabArray::ParallelCopy() 41 0.0001103 0.0001247 0.0001419 0.00% Castro::construct_old_source() 50 9.898e-05 0.0001093 0.0001309 0.00% FillPatchSingleLevel 41 8.055e-05 9.155e-05 0.0001013 0.00% Castro::do_new_sources() 10 7.281e-05 8.201e-05 9.411e-05 0.00% Amr::FinalizeInit() 1 4.285e-06 1.626e-05 9.22e-05 0.00% Castro::subcycle_advance_ctu() 10 6.738e-05 7.59e-05 8.37e-05 0.00% Castro::apply_source_to_state() 20 6.22e-05 6.896e-05 8.251e-05 0.00% Castro::advance() 10 5.206e-05 6.205e-05 7.319e-05 0.00% Castro::construct_old_gravity() 10 4.393e-05 4.913e-05 5.605e-05 0.00% Castro::expand_state() 10 3.54e-05 4.325e-05 5.355e-05 0.00% Castro::construct_new_gravity() 10 3.381e-05 4.053e-05 5.238e-05 0.00% Amr::defBaseLevel() 1 3.839e-05 4.369e-05 4.922e-05 0.00% Castro::check_for_nan() 20 3.039e-05 3.268e-05 3.571e-05 0.00% Castro::post_timestep() 10 1.685e-05 2.086e-05 2.761e-05 0.00% Castro::post_init() 1 9.08e-06 1.11e-05 1.833e-05 0.00% Castro::computeNewDt() 9 1.008e-05 1.084e-05 1.207e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.125e-06 9.63e-06 1.104e-05 0.00% Amr::InitializeInit() 1 2.674e-06 4.245e-06 7.05e-06 0.00% Castro::computeInitialDt() 2 3.254e-06 4.673e-06 5.527e-06 0.00% Amr::init() 1 1.939e-06 2.591e-06 3.166e-06 0.00% Amr::initialInit() 1 1.688e-06 2.076e-06 2.624e-06 0.00% Other 260 0.02042 0.02358 0.02567 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.905 3.906 3.907 100.00% Amr::coarseTimeStep() 10 3.687 3.687 3.687 94.37% Amr::timeStep() 10 3.674 3.675 3.675 94.08% Castro::advance() 10 3.658 3.659 3.659 93.67% Castro::subcycle_advance_ctu() 10 3.55 3.554 3.564 91.24% Castro::do_advance_ctu() 10 3.55 3.554 3.564 91.24% Castro::construct_ctu_hydro_source() 10 2.642 2.647 2.655 67.97% check_for_negative_density() 10 0.05567 0.2243 0.4679 11.98% Gravity::make_radial_gravity() 21 0.3236 0.3376 0.3629 9.29% AmrLevel::FillPatch() 41 0.2796 0.2931 0.3088 7.91% FillPatchIterator::Initialize 41 0.2383 0.2432 0.2525 6.46% Castro::initialize_do_advance() 10 0.2233 0.2358 0.245 6.27% Gravity::get_new_grav_vector() 11 0.2357 0.2368 0.2377 6.09% Castro::construct_old_gravity() 10 0.1955 0.2057 0.2256 5.78% Gravity::get_old_grav_vector() 10 0.1945 0.2049 0.2248 5.75% Castro::construct_new_gravity() 10 0.2066 0.2075 0.2081 5.33% Amr::init() 1 0.1985 0.1986 0.1986 5.09% Amr::initialInit() 1 0.177 0.1779 0.1782 4.56% FillPatchIterator::FillFromLevel0() 41 0.1605 0.1678 0.1768 4.53% FillPatchSingleLevel 41 0.1604 0.1676 0.1766 4.52% Castro::expand_state() 10 0.1536 0.1648 0.1756 4.50% Amr::InitializeInit() 1 0.06648 0.1034 0.1447 3.70% Amr::defBaseLevel() 1 0.06647 0.1034 0.1447 3.70% FabArray::ParallelCopy() 41 0.1207 0.127 0.1425 3.65% Castro::do_old_sources() 10 0.138 0.1396 0.142 3.63% amrex::Copy() 193 0.09259 0.1186 0.1315 3.37% Castro::clean_state() 62 0.1225 0.1257 0.128 3.28% Castro::initData() 1 0.04265 0.07873 0.1186 3.04% Amr::FinalizeInit() 1 0.03231 0.0745 0.1116 2.86% FabArray::setVal() 143 0.09236 0.1025 0.1072 2.74% Castro::estTimeStep() 21 0.03299 0.06782 0.1053 2.70% Castro::initialize_advance() 10 0.08949 0.09954 0.1037 2.66% FabArray::ParallelCopy_finish() 41 0.057 0.06499 0.08928 2.29% Castro::do_new_sources() 10 0.07558 0.0804 0.08414 2.15% Castro::computeInitialDt() 2 0.002226 0.04357 0.08047 2.06% Castro::computeTemp() 63 0.06632 0.07151 0.07457 1.91% FabArray::ParallelCopy_nowait() 41 0.05308 0.06184 0.06592 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04808 0.05152 0.05403 1.38% Castro::reset_internal_energy(Fab) 1008 0.04774 0.05117 0.05365 1.37% Castro::normalize_species() 62 0.04562 0.04744 0.04913 1.26% StateDataPhysBCFunct::() 41 0.03405 0.04056 0.04654 1.19% StateData::FillBoundary(geom) 41 0.03394 0.04042 0.04639 1.19% Castro::construct_new_source() 50 0.0372 0.04072 0.04413 1.13% Castro::construct_new_gravity_source() 10 0.02991 0.03253 0.03521 0.90% Amr::writePlotFile() 2 0.03301 0.03336 0.0342 0.88% Castro::post_init() 1 0.03 0.03055 0.03089 0.79% Gravity::interpolate_monopole_grav() 21 0.02713 0.02771 0.02813 0.72% Castro::finalize_do_advance() 10 0.01224 0.01672 0.02331 0.60% Castro::apply_source_to_state() 20 0.01914 0.01987 0.02127 0.54% FabArray::Saxpy() 20 0.01907 0.0198 0.02121 0.54% FabArray::setDomainBndry() 41 0.01829 0.01981 0.02102 0.54% Castro::Castro() 1 0.01535 0.01667 0.01795 0.46% VisMF::Write(FabArray) 2 0.01043 0.01361 0.01756 0.45% Castro::construct_old_source() 50 0.01446 0.01591 0.01672 0.43% Castro::construct_old_gravity_source() 10 0.01435 0.0158 0.01661 0.43% Castro::post_timestep() 10 0.01561 0.01597 0.01643 0.42% Castro::check_for_nan() 20 0.01289 0.01434 0.01543 0.40% MultiFab::contains_nan() 20 0.01286 0.01431 0.0154 0.39% Castro::initMFs() 1 0.008774 0.009514 0.01115 0.29% Castro::computeNewDt() 9 0.00885 0.008859 0.008868 0.23% AmrLevel::AmrLevel(dm) 1 0.007307 0.007749 0.008225 0.21% Other 260 0.02621 0.03023 0.03318 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8661 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6760 KiB 6765 KiB 6768 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4540 KiB 4545 KiB 4559 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 271 KiB 285 KiB 301 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 21 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2809 KiB 2810 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 211 KiB 220 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 47 KiB 49 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 67 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-29-g12d6af2f76ec) finalized