Initializing AMReX (24.11-31-g1c8b5453023a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-31-g1c8b5453023a) initialized Starting run at 06:21:36 UTC on 2024-11-25. Successfully read inputs file ... Castro git describe: 24.11-11-g4f80f87f0 AMReX git describe: 24.11-31-g1c8b54530 Microphysics git describe: 24.11-3-gb8767267 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014643928 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.328581839 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329063844 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.30545171 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.303540904 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.342692488 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.298698726 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300587757 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293287521 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295099279 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295932343 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007890366 seconds Ending run at 06:21:39 UTC on 2024-11-25. Run time = 3.296772225 Run time without initialization = 3.106830179 Average number of zones advanced per microsecond: 0.844 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2959 ... 3.2965 ... 3.2969 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1100 2.1459 2.2026 66.81% Gravity::make_radial_gravity() 21 0.2948 0.3007 0.3156 9.57% Castro::initData() 1 0.03971 0.07419 0.1226 3.72% check_for_negative_density() 10 0.02177 0.08127 0.1186 3.60% Castro::estTimeStep() 21 0.02479 0.07907 0.1105 3.35% FabArray::ParallelCopy_finish() 41 0.03692 0.05113 0.09718 2.95% amrex::Copy() 193 0.06179 0.07962 0.08414 2.55% FabArray::setVal() 143 0.05666 0.07068 0.07387 2.24% Castro::normalize_species() 62 0.04528 0.04822 0.05103 1.55% Castro::reset_internal_energy(Fab) 1008 0.04384 0.0474 0.05079 1.54% FabArray::ParallelCopy_nowait() 41 0.036 0.04113 0.04333 1.31% FillPatchIterator::Initialize 41 0.02613 0.0324 0.03623 1.10% StateData::FillBoundary(geom) 41 0.03069 0.03213 0.03436 1.04% Gravity::interpolate_monopole_grav() 21 0.02682 0.02717 0.0277 0.84% Castro::construct_new_gravity_source() 10 0.02368 0.02494 0.0269 0.82% Castro::computeTemp() 63 0.0173 0.01865 0.0199 0.60% Castro::initialize_do_advance() 10 0.01048 0.01612 0.01786 0.54% FabArray::Saxpy() 20 0.01221 0.01395 0.01555 0.47% Castro::initialize_advance() 10 0.004717 0.01153 0.01355 0.41% MultiFab::contains_nan() 20 0.0105 0.01168 0.01325 0.40% Amr::writePlotFile() 2 0.007371 0.01075 0.01307 0.40% VisMF::Write(FabArray) 2 0.00883 0.009521 0.01252 0.38% FabArray::setDomainBndry() 41 0.007757 0.009831 0.01147 0.35% Castro::construct_old_gravity_source() 10 0.006647 0.009959 0.01094 0.33% Castro::initMFs() 1 0.006392 0.006925 0.007733 0.23% Castro::construct_new_source() 50 0.005937 0.006423 0.006799 0.21% main() 1 0.004551 0.005132 0.005521 0.17% Gravity::get_new_grav_vector() 11 0.002801 0.00337 0.00389 0.12% Amr::coarseTimeStep() 10 0.001953 0.002542 0.003232 0.10% Gravity::get_old_grav_vector() 10 0.001518 0.002124 0.002517 0.08% Castro::finalize_do_advance() 10 0.0006459 0.001074 0.001181 0.04% AmrLevel::FillPatch() 41 0.0007646 0.000868 0.0009848 0.03% Amr::timeStep() 10 0.0001757 0.0002268 0.0004155 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002837 0.0003051 0.0003394 0.01% Castro::do_advance_ctu() 10 0.0001468 0.0001733 0.0002026 0.01% Castro::clean_state() 62 0.000149 0.0001648 0.0001777 0.01% Castro::do_old_sources() 10 9.434e-05 0.0001043 0.0001251 0.00% FillPatchIterator::FillFromLevel0() 41 9.551e-05 0.0001098 0.0001245 0.00% StateDataPhysBCFunct::() 41 9.173e-05 0.0001012 0.0001159 0.00% FabArray::ParallelCopy() 41 8.882e-05 9.651e-05 0.0001066 0.00% Castro::construct_old_source() 50 6.907e-05 8.316e-05 9.624e-05 0.00% Castro::Castro() 1 5.126e-05 6.863e-05 8.828e-05 0.00% Castro::do_new_sources() 10 6.253e-05 6.76e-05 7.532e-05 0.00% FillPatchSingleLevel 41 5.969e-05 6.407e-05 6.957e-05 0.00% Amr::FinalizeInit() 1 3.543e-06 1.277e-05 6.834e-05 0.00% Castro::subcycle_advance_ctu() 10 4.154e-05 5.363e-05 6.742e-05 0.00% Amr::defBaseLevel() 1 3.121e-05 4.643e-05 5.776e-05 0.00% Castro::apply_source_to_state() 20 4.341e-05 4.964e-05 5.447e-05 0.00% Castro::advance() 10 4.506e-05 4.823e-05 5.184e-05 0.00% Castro::construct_old_gravity() 10 3.38e-05 4.057e-05 5.018e-05 0.00% Castro::construct_new_gravity() 10 2.895e-05 3.571e-05 4.324e-05 0.00% Castro::check_for_nan() 20 2.545e-05 2.901e-05 3.629e-05 0.00% Castro::expand_state() 10 2.493e-05 2.889e-05 3.357e-05 0.00% Castro::post_timestep() 10 1.245e-05 1.522e-05 2.123e-05 0.00% Castro::computeNewDt() 9 8.904e-06 9.917e-06 1.083e-05 0.00% Castro::post_init() 1 7.675e-06 8.764e-06 1.074e-05 0.00% Amr::InitializeInit() 1 2.816e-06 4.504e-06 9.996e-06 0.00% Castro::computeInitialDt() 2 3.55e-06 3.961e-06 4.415e-06 0.00% Amr::init() 1 1.48e-06 1.994e-06 2.549e-06 0.00% Amr::initialInit() 1 1.258e-06 1.593e-06 2.105e-06 0.00% Other 261 0.01593 0.01811 0.02027 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.296 3.296 3.297 100.00% Amr::coarseTimeStep() 10 3.094 3.094 3.094 93.83% Amr::timeStep() 10 3.08 3.081 3.081 93.46% Castro::advance() 10 3.063 3.064 3.064 92.95% Castro::subcycle_advance_ctu() 10 2.98 2.986 3.006 91.17% Castro::do_advance_ctu() 10 2.98 2.986 3.006 91.17% Castro::construct_ctu_hydro_source() 10 2.246 2.249 2.253 68.33% Gravity::make_radial_gravity() 21 0.3105 0.3175 0.329 9.98% AmrLevel::FillPatch() 41 0.1912 0.1993 0.2248 6.82% Gravity::get_new_grav_vector() 11 0.2116 0.2121 0.213 6.46% FillPatchIterator::Initialize 41 0.1579 0.1671 0.1995 6.05% Castro::construct_old_gravity() 10 0.1833 0.1871 0.1961 5.95% Gravity::get_old_grav_vector() 10 0.1826 0.1864 0.1955 5.93% Amr::init() 1 0.1893 0.1896 0.1896 5.75% Castro::construct_new_gravity() 10 0.1867 0.1869 0.1872 5.68% Castro::initialize_do_advance() 10 0.1612 0.1652 0.1758 5.33% Amr::initialInit() 1 0.1738 0.1744 0.175 5.31% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1249 0.1653 5.01% FillPatchSingleLevel 41 0.1112 0.1247 0.1652 5.01% Amr::InitializeInit() 1 0.05989 0.09505 0.1451 4.40% Amr::defBaseLevel() 1 0.05989 0.09505 0.1451 4.40% FabArray::ParallelCopy() 41 0.08031 0.09245 0.1334 4.05% Castro::expand_state() 10 0.1072 0.1119 0.1291 3.92% Castro::initData() 1 0.04382 0.07822 0.1271 3.86% Castro::clean_state() 62 0.1162 0.1199 0.1255 3.81% check_for_negative_density() 10 0.02177 0.08127 0.1186 3.60% Amr::FinalizeInit() 1 0.02991 0.07938 0.1143 3.47% Castro::estTimeStep() 21 0.02479 0.07907 0.1105 3.35% Castro::do_old_sources() 10 0.09411 0.09719 0.1001 3.04% FabArray::ParallelCopy_finish() 41 0.03692 0.05113 0.09718 2.95% Castro::computeInitialDt() 2 0.002769 0.05276 0.08795 2.67% amrex::Copy() 193 0.06179 0.07962 0.08414 2.55% Castro::initialize_advance() 10 0.05398 0.07405 0.08028 2.43% FabArray::setVal() 143 0.05666 0.07068 0.07387 2.24% Castro::computeTemp() 63 0.06144 0.06636 0.071 2.15% Castro::do_new_sources() 10 0.06284 0.06609 0.07037 2.13% Castro::reset_internal_energy(MultiFab) 63 0.04413 0.0477 0.0511 1.55% Castro::normalize_species() 62 0.04528 0.04822 0.05103 1.55% Castro::reset_internal_energy(Fab) 1008 0.04384 0.0474 0.05079 1.54% FabArray::ParallelCopy_nowait() 41 0.03611 0.04122 0.04342 1.32% StateDataPhysBCFunct::() 41 0.03079 0.03223 0.03446 1.05% StateData::FillBoundary(geom) 41 0.03069 0.03213 0.03436 1.04% Castro::construct_new_source() 50 0.02961 0.03137 0.03348 1.02% Gravity::interpolate_monopole_grav() 21 0.02682 0.02717 0.0277 0.84% Castro::construct_new_gravity_source() 10 0.02368 0.02494 0.0269 0.82% Castro::post_init() 1 0.02603 0.02638 0.02683 0.81% Amr::writePlotFile() 2 0.02257 0.02309 0.02375 0.72% Castro::finalize_do_advance() 10 0.01431 0.01863 0.02192 0.66% Castro::post_timestep() 10 0.01571 0.01643 0.01705 0.52% Castro::apply_source_to_state() 20 0.01226 0.014 0.0156 0.47% FabArray::Saxpy() 20 0.01221 0.01395 0.01555 0.47% Castro::check_for_nan() 20 0.01053 0.01171 0.01328 0.40% MultiFab::contains_nan() 20 0.0105 0.01168 0.01325 0.40% VisMF::Write(FabArray) 2 0.00883 0.009521 0.01252 0.38% Castro::Castro() 1 0.01009 0.0108 0.01163 0.35% FabArray::setDomainBndry() 41 0.007757 0.009831 0.01147 0.35% Castro::construct_old_source() 50 0.006716 0.01004 0.01103 0.33% Castro::construct_old_gravity_source() 10 0.006647 0.009959 0.01094 0.33% Castro::computeNewDt() 9 0.008753 0.008772 0.008795 0.27% Castro::initMFs() 1 0.006392 0.006925 0.007733 0.23% Other 261 0.02611 0.02954 0.03293 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 40 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8667 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6716 KiB 6722 KiB 6726 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4516 KiB 4525 KiB 4556 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 228 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2784 KiB 2787 KiB 2788 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 240 KiB 245 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 43 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-31-g1c8b5453023a) finalized