Initializing AMReX (24.11-32-g4a3a5ff9052a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-32-g4a3a5ff9052a) initialized Starting run at 06:24:03 UTC on 2024-11-26. Successfully read inputs file ... Castro git describe: 24.11-14-g362e87f03 AMReX git describe: 24.11-32-g4a3a5ff90 Microphysics git describe: 24.11-11-g48da3f88 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014114357 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.31400342 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336539572 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.307265437 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309738955 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.30018611 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296444364 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295897767 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29738911 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308152821 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.313516141 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009225664 seconds Ending run at 06:24:07 UTC on 2024-11-26. Run time = 4.111472869 Run time without initialization = 3.094107122 Average number of zones advanced per microsecond: 0.847 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 4.1107 ... 4.1110 ... 4.1115 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0255 2.1171 2.1690 52.76% Amr::InitAmr() 1 0.0002099 0.1041 0.8312 20.22% DistributionMapping::LeastUsedCPUs() 1 3.145e-05 0.7272 0.8311 20.21% Gravity::make_radial_gravity() 21 0.2974 0.3152 0.3353 8.15% check_for_negative_density() 10 0.04769 0.0995 0.1957 4.76% Castro::estTimeStep() 21 0.03272 0.08326 0.1247 3.03% Castro::initData() 1 0.0369 0.07432 0.1228 2.99% FabArray::ParallelCopy_finish() 41 0.04056 0.06582 0.1131 2.75% amrex::Copy() 193 0.04935 0.07199 0.08773 2.13% FabArray::setVal() 143 0.04331 0.06053 0.07497 1.82% Castro::reset_internal_energy(Fab) 1008 0.04054 0.04526 0.04673 1.14% Castro::normalize_species() 62 0.04486 0.04567 0.04652 1.13% FabArray::ParallelCopy_nowait() 41 0.02855 0.03812 0.04319 1.05% StateData::FillBoundary(geom) 41 0.03007 0.03286 0.03635 0.88% FillPatchIterator::Initialize 41 0.02649 0.03268 0.03548 0.86% Gravity::interpolate_monopole_grav() 21 0.02724 0.02749 0.0282 0.69% Castro::construct_new_gravity_source() 10 0.01905 0.0226 0.02576 0.63% Castro::computeTemp() 63 0.01691 0.01806 0.01852 0.45% Castro::initialize_do_advance() 10 0.01151 0.01496 0.01715 0.42% Amr::writePlotFile() 2 0.007795 0.01126 0.01369 0.33% MultiFab::contains_nan() 20 0.01003 0.0114 0.01353 0.33% VisMF::Write(FabArray) 2 0.008932 0.009969 0.01349 0.33% FabArray::Saxpy() 20 0.006701 0.0104 0.01293 0.31% FabArray::setDomainBndry() 41 0.006764 0.009289 0.01132 0.28% Castro::initialize_advance() 10 0.005526 0.008732 0.009664 0.24% Castro::construct_old_gravity_source() 10 0.004974 0.007686 0.009244 0.22% Castro::construct_new_source() 50 0.004595 0.005359 0.005921 0.14% main() 1 0.004453 0.004761 0.005283 0.13% Gravity::get_new_grav_vector() 11 0.00262 0.003651 0.00464 0.11% Gravity::get_old_grav_vector() 10 0.001512 0.00206 0.002727 0.07% Amr::coarseTimeStep() 10 0.000964 0.001827 0.002557 0.06% AmrLevel::FillPatch() 41 0.0008677 0.00101 0.001286 0.03% Castro::finalize_do_advance() 10 0.0005747 0.0009175 0.001263 0.03% Amr::timeStep() 10 0.000172 0.0002356 0.0005072 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0002927 0.0003069 0.01% Castro::do_advance_ctu() 10 0.0001396 0.0001646 0.0002125 0.01% Castro::clean_state() 62 0.0001427 0.0001539 0.0001632 0.00% FillPatchIterator::FillFromLevel0() 41 9.379e-05 0.000104 0.000123 0.00% StateDataPhysBCFunct::() 41 9.14e-05 0.0001009 0.0001071 0.00% FabArray::ParallelCopy() 41 8.779e-05 9.559e-05 0.0001029 0.00% Castro::do_old_sources() 10 8.094e-05 8.897e-05 9.294e-05 0.00% Castro::Castro() 1 4.545e-05 6.751e-05 8.826e-05 0.00% Amr::FinalizeInit() 1 3.599e-06 1.331e-05 7.496e-05 0.00% Castro::construct_old_source() 50 4.849e-05 6.533e-05 7.494e-05 0.00% FillPatchSingleLevel 41 5.84e-05 6.366e-05 6.718e-05 0.00% Castro::subcycle_advance_ctu() 10 4.62e-05 5.293e-05 6.168e-05 0.00% Castro::do_new_sources() 10 4.737e-05 5.387e-05 6.131e-05 0.00% Castro::apply_source_to_state() 20 3.02e-05 4.353e-05 5.753e-05 0.00% Castro::advance() 10 4.12e-05 4.644e-05 5.283e-05 0.00% Amr::defBaseLevel() 1 2.86e-05 4.014e-05 4.928e-05 0.00% Castro::construct_old_gravity() 10 3.211e-05 4.032e-05 4.676e-05 0.00% Castro::check_for_nan() 20 2.22e-05 3.006e-05 4.232e-05 0.00% Castro::construct_new_gravity() 10 2.75e-05 3.418e-05 3.908e-05 0.00% Castro::expand_state() 10 2.004e-05 2.532e-05 2.939e-05 0.00% Castro::post_timestep() 10 1.352e-05 1.596e-05 1.942e-05 0.00% Castro::computeNewDt() 9 8.924e-06 1.083e-05 1.834e-05 0.00% Castro::post_init() 1 8.55e-06 9.466e-06 1.057e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.083e-06 5.893e-06 8.926e-06 0.00% Amr::InitializeInit() 1 2.736e-06 4.025e-06 7.419e-06 0.00% Castro::computeInitialDt() 2 3.3e-06 3.882e-06 4.843e-06 0.00% Amr::init() 1 1.605e-06 2.281e-06 2.745e-06 0.00% Amr::initialInit() 1 1.32e-06 1.567e-06 1.834e-06 0.00% Other 259 0.02157 0.02415 0.02621 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.111 4.111 4.112 100.00% Amr::coarseTimeStep() 10 3.08 3.08 3.08 74.90% Amr::timeStep() 10 3.066 3.067 3.068 74.62% Castro::advance() 10 3.051 3.051 3.052 74.23% Castro::subcycle_advance_ctu() 10 2.977 2.986 2.999 72.94% Castro::do_advance_ctu() 10 2.977 2.986 2.999 72.94% Castro::construct_ctu_hydro_source() 10 2.234 2.238 2.241 54.51% Amr::init() 1 0.186 0.9131 1.017 24.74% Amr::initialInit() 1 0.1717 0.8987 1.003 24.39% Amr::InitializeInit() 1 0.05933 0.8214 0.9746 23.71% Amr::defBaseLevel() 1 0.05932 0.8214 0.9746 23.71% Amr::InitAmr() 1 0.0002129 0.1041 0.8313 20.22% DistributionMapping::SFCProcessorMapDoIt() 1 4.135e-05 0.7272 0.8311 20.21% DistributionMapping::LeastUsedCPUs() 1 3.145e-05 0.7272 0.8311 20.21% Gravity::make_radial_gravity() 21 0.3139 0.3298 0.3465 8.43% AmrLevel::FillPatch() 41 0.1975 0.2093 0.2274 5.53% Gravity::get_new_grav_vector() 11 0.2138 0.2143 0.2153 5.24% Castro::construct_old_gravity() 10 0.1851 0.197 0.2097 5.10% Gravity::get_old_grav_vector() 10 0.1842 0.1964 0.2091 5.09% FillPatchIterator::Initialize 41 0.1611 0.1792 0.2055 5.00% check_for_negative_density() 10 0.04769 0.0995 0.1957 4.76% Castro::construct_new_gravity() 10 0.1895 0.1902 0.1909 4.64% Castro::initialize_do_advance() 10 0.1622 0.1689 0.1732 4.21% FillPatchIterator::FillFromLevel0() 41 0.1151 0.1373 0.1722 4.19% FillPatchSingleLevel 41 0.115 0.1372 0.1721 4.19% FabArray::ParallelCopy() 41 0.08254 0.1041 0.1419 3.45% Castro::initData() 1 0.04041 0.07798 0.1266 3.08% Castro::estTimeStep() 21 0.03272 0.08326 0.1247 3.03% Castro::expand_state() 10 0.1112 0.1169 0.1236 3.01% Castro::clean_state() 62 0.1092 0.1144 0.1165 2.83% Amr::FinalizeInit() 1 0.02791 0.07736 0.1149 2.79% FabArray::ParallelCopy_finish() 41 0.04056 0.06582 0.1131 2.75% Castro::do_old_sources() 10 0.09022 0.09378 0.09645 2.35% Castro::computeInitialDt() 2 0.002458 0.05185 0.08933 2.17% amrex::Copy() 193 0.04935 0.07199 0.08773 2.13% FabArray::setVal() 143 0.04331 0.06053 0.07497 1.82% Castro::initialize_advance() 10 0.04902 0.06239 0.07128 1.73% Castro::do_new_sources() 10 0.05119 0.06041 0.06753 1.64% Castro::computeTemp() 63 0.05776 0.06362 0.06554 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04084 0.04555 0.04703 1.14% Castro::reset_internal_energy(Fab) 1008 0.04054 0.04526 0.04673 1.14% Castro::normalize_species() 62 0.04486 0.04567 0.04652 1.13% FabArray::ParallelCopy_nowait() 41 0.02866 0.03822 0.04329 1.05% StateDataPhysBCFunct::() 41 0.03016 0.03296 0.03646 0.89% StateData::FillBoundary(geom) 41 0.03007 0.03286 0.03635 0.88% Castro::finalize_do_advance() 10 0.01492 0.02274 0.03229 0.79% Castro::construct_new_source() 50 0.02367 0.02795 0.03158 0.77% Gravity::interpolate_monopole_grav() 21 0.02724 0.02749 0.0282 0.69% Castro::construct_new_gravity_source() 10 0.01905 0.0226 0.02576 0.63% Castro::post_init() 1 0.02482 0.02507 0.0252 0.61% Amr::writePlotFile() 2 0.02357 0.02371 0.02401 0.58% Castro::post_timestep() 10 0.01522 0.01559 0.01613 0.39% Castro::check_for_nan() 20 0.01005 0.01143 0.01356 0.33% MultiFab::contains_nan() 20 0.01003 0.0114 0.01353 0.33% VisMF::Write(FabArray) 2 0.008932 0.009969 0.01349 0.33% Castro::apply_source_to_state() 20 0.006731 0.01045 0.01298 0.32% FabArray::Saxpy() 20 0.006701 0.0104 0.01293 0.31% FabArray::setDomainBndry() 41 0.006764 0.009289 0.01132 0.28% Castro::Castro() 1 0.009809 0.01035 0.01079 0.26% Castro::computeNewDt() 9 0.009576 0.009597 0.009622 0.23% Castro::construct_old_source() 50 0.005023 0.007751 0.009314 0.23% Castro::construct_old_gravity_source() 10 0.004974 0.007686 0.009244 0.22% Other 259 0.03063 0.03461 0.03806 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 10 MiB 11 MiB 11 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 6908 KiB 6916 KiB 6918 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 5365 KiB 5369 KiB 5371 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 5691 KiB 5697 KiB 5698 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 3618 KiB 3628 KiB 3645 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 181 KiB 192 KiB 208 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 11 KiB 13 KiB 17 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2223 KiB 2226 KiB 2227 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 194 KiB 204 KiB 214 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 31 KiB 39 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1617 KiB 1619 KiB 1619 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 66 KiB 66 KiB 67 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 57 KiB 61 KiB 65 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-32-g4a3a5ff9052a) finalized