Initializing AMReX (24.11-32-g4a3a5ff9052a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-32-g4a3a5ff9052a) initialized Starting run at 06:19:20 UTC on 2024-11-28. Successfully read inputs file ... Castro git describe: 24.11-14-g362e87f03 AMReX git describe: 24.11-32-g4a3a5ff90 Microphysics git describe: 24.11-11-g48da3f88 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019984963 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.407789119 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.378262047 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.373857627 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.382758006 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36195726 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.36243482 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.361105076 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.361329073 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.361587216 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.367185554 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012315222 seconds Ending run at 06:19:24 UTC on 2024-11-28. Run time = 3.926245827 Run time without initialization = 3.73881912 Average number of zones advanced per microsecond: 0.701 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9234 ... 3.9255 ... 3.9263 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1556 2.4241 2.6342 67.09% check_for_negative_density() 10 0.01553 0.2324 0.5074 12.92% Gravity::make_radial_gravity() 21 0.2924 0.312 0.3351 8.53% amrex::Copy() 193 0.09399 0.116 0.1304 3.32% FabArray::setVal() 143 0.09296 0.1027 0.1102 2.81% Castro::initData() 1 0.03829 0.07261 0.1052 2.68% Castro::estTimeStep() 21 0.03134 0.06112 0.1014 2.58% FabArray::ParallelCopy_finish() 41 0.05581 0.06735 0.09238 2.35% FabArray::ParallelCopy_nowait() 41 0.05389 0.06136 0.06654 1.69% FillPatchIterator::Initialize 41 0.04671 0.0556 0.06216 1.58% Castro::reset_internal_energy(Fab) 1008 0.04987 0.05196 0.05365 1.37% Castro::normalize_species() 62 0.04701 0.04751 0.04815 1.23% StateData::FillBoundary(geom) 41 0.03668 0.04079 0.04716 1.20% Castro::construct_new_gravity_source() 10 0.02938 0.03249 0.03553 0.91% Castro::initialize_do_advance() 10 0.02342 0.02555 0.02882 0.73% Gravity::interpolate_monopole_grav() 21 0.02712 0.02759 0.02814 0.72% FabArray::Saxpy() 20 0.01833 0.01976 0.02156 0.55% Castro::computeTemp() 63 0.01929 0.02011 0.0214 0.54% FabArray::setDomainBndry() 41 0.01489 0.01881 0.02135 0.54% Amr::writePlotFile() 2 0.0109 0.01409 0.01802 0.46% Castro::initialize_advance() 10 0.01514 0.01618 0.01675 0.43% VisMF::Write(FabArray) 2 0.01041 0.01319 0.01648 0.42% Castro::construct_old_gravity_source() 10 0.01419 0.01546 0.01615 0.41% MultiFab::contains_nan() 20 0.01266 0.01398 0.01557 0.40% Castro::initMFs() 1 0.008946 0.009622 0.01117 0.28% Castro::construct_new_source() 50 0.007062 0.008067 0.008935 0.23% main() 1 0.004961 0.006985 0.0078 0.20% Gravity::get_new_grav_vector() 11 0.004326 0.005446 0.006541 0.17% Gravity::get_old_grav_vector() 10 0.002635 0.003011 0.003495 0.09% Amr::coarseTimeStep() 10 0.0007042 0.001325 0.002157 0.05% AmrLevel::FillPatch() 41 0.001037 0.001401 0.001577 0.04% Castro::finalize_do_advance() 10 0.001218 0.001279 0.001324 0.03% Amr::timeStep() 10 0.0001725 0.0002505 0.0005413 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003312 0.0003457 0.0003606 0.01% Castro::do_advance_ctu() 10 0.0001805 0.0002103 0.0002528 0.01% Castro::clean_state() 62 0.0001823 0.0002075 0.0002408 0.01% Castro::Castro() 1 6.817e-05 0.0001389 0.0001974 0.01% StateDataPhysBCFunct::() 41 0.0001228 0.000146 0.0001677 0.00% Castro::do_old_sources() 10 0.0001148 0.0001272 0.0001466 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001239 0.0001368 0.0001456 0.00% FabArray::ParallelCopy() 41 0.0001201 0.000129 0.0001445 0.00% Castro::construct_old_source() 50 8.249e-05 0.0001014 0.0001321 0.00% Amr::FinalizeInit() 1 4.625e-06 1.69e-05 9.295e-05 0.00% Castro::subcycle_advance_ctu() 10 6.615e-05 7.415e-05 9.24e-05 0.00% FillPatchSingleLevel 41 7.469e-05 8.497e-05 9.2e-05 0.00% Castro::do_new_sources() 10 5.758e-05 7.231e-05 8.896e-05 0.00% Castro::advance() 10 5.462e-05 6.299e-05 8.055e-05 0.00% Castro::apply_source_to_state() 20 5.419e-05 6.14e-05 7.985e-05 0.00% Castro::construct_old_gravity() 10 3.96e-05 4.922e-05 6.015e-05 0.00% Castro::construct_new_gravity() 10 3.246e-05 4.205e-05 5.427e-05 0.00% Amr::defBaseLevel() 1 3.503e-05 4.485e-05 5.309e-05 0.00% Castro::expand_state() 10 2.718e-05 3.957e-05 5.104e-05 0.00% Castro::post_timestep() 10 1.642e-05 2.18e-05 3.83e-05 0.00% Castro::check_for_nan() 20 2.939e-05 3.253e-05 3.724e-05 0.00% Castro::post_init() 1 1.01e-05 1.284e-05 1.982e-05 0.00% Castro::computeNewDt() 9 8.799e-06 1.097e-05 1.377e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.84e-06 9.898e-06 1.317e-05 0.00% Amr::initialInit() 1 1.898e-06 3.2e-06 1.019e-05 0.00% Amr::InitializeInit() 1 2.828e-06 4.271e-06 7.443e-06 0.00% Castro::computeInitialDt() 2 4.346e-06 5.041e-06 5.874e-06 0.00% Amr::init() 1 2.513e-06 3.024e-06 4.267e-06 0.00% Other 260 0.02031 0.02314 0.02541 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.923 3.925 3.926 100.00% Amr::coarseTimeStep() 10 3.719 3.719 3.719 94.71% Amr::timeStep() 10 3.706 3.707 3.707 94.43% Castro::advance() 10 3.69 3.69 3.691 94.01% Castro::subcycle_advance_ctu() 10 3.58 3.585 3.595 91.56% Castro::do_advance_ctu() 10 3.579 3.585 3.595 91.56% Castro::construct_ctu_hydro_source() 10 2.673 2.68 2.693 68.59% check_for_negative_density() 10 0.01553 0.2324 0.5074 12.92% Gravity::make_radial_gravity() 21 0.3173 0.336 0.3557 9.06% AmrLevel::FillPatch() 41 0.267 0.2931 0.3114 7.93% FillPatchIterator::Initialize 41 0.228 0.2445 0.2549 6.49% Castro::initialize_do_advance() 10 0.2226 0.2349 0.2462 6.27% Gravity::get_new_grav_vector() 11 0.2316 0.2331 0.2339 5.96% Castro::construct_old_gravity() 10 0.1945 0.2085 0.2246 5.72% Gravity::get_old_grav_vector() 10 0.1935 0.2076 0.2235 5.69% Castro::construct_new_gravity() 10 0.2032 0.2047 0.2059 5.24% Amr::init() 1 0.1869 0.187 0.1871 4.76% FillPatchIterator::FillFromLevel0() 41 0.1609 0.1701 0.1858 4.73% FillPatchSingleLevel 41 0.1608 0.17 0.1856 4.73% Castro::expand_state() 10 0.1516 0.1647 0.1792 4.56% Amr::initialInit() 1 0.1667 0.1671 0.1675 4.27% FabArray::ParallelCopy() 41 0.1205 0.129 0.1465 3.73% Castro::do_old_sources() 10 0.131 0.1389 0.1419 3.62% Amr::InitializeInit() 1 0.06707 0.102 0.1347 3.43% Amr::defBaseLevel() 1 0.06707 0.102 0.1347 3.43% amrex::Copy() 193 0.09399 0.116 0.1304 3.32% Castro::clean_state() 62 0.123 0.1264 0.1291 3.29% Castro::initData() 1 0.04336 0.0775 0.1103 2.81% FabArray::setVal() 143 0.09296 0.1027 0.1102 2.81% Castro::initialize_advance() 10 0.09052 0.1006 0.1061 2.70% Castro::estTimeStep() 21 0.03134 0.06112 0.1014 2.58% Amr::FinalizeInit() 1 0.0324 0.06514 0.1001 2.55% FabArray::ParallelCopy_finish() 41 0.05581 0.06735 0.09238 2.35% Castro::do_new_sources() 10 0.07324 0.07943 0.08447 2.15% Castro::computeTemp() 63 0.06952 0.07241 0.07513 1.91% Castro::computeInitialDt() 2 0.002297 0.03501 0.06995 1.78% FabArray::ParallelCopy_nowait() 41 0.05401 0.06148 0.06665 1.70% Castro::reset_internal_energy(MultiFab) 63 0.05023 0.0523 0.05399 1.38% Castro::reset_internal_energy(Fab) 1008 0.04987 0.05196 0.05365 1.37% Castro::normalize_species() 62 0.04701 0.04751 0.04815 1.23% StateDataPhysBCFunct::() 41 0.0368 0.04094 0.04733 1.21% StateData::FillBoundary(geom) 41 0.03668 0.04079 0.04716 1.20% Castro::construct_new_source() 50 0.03647 0.04056 0.04436 1.13% Castro::construct_new_gravity_source() 10 0.02938 0.03249 0.03553 0.91% Amr::writePlotFile() 2 0.032 0.03233 0.03259 0.83% Castro::post_init() 1 0.02924 0.02961 0.0301 0.77% Gravity::interpolate_monopole_grav() 21 0.02712 0.02759 0.02814 0.72% Castro::finalize_do_advance() 10 0.01094 0.01797 0.02605 0.66% Castro::apply_source_to_state() 20 0.01839 0.01982 0.02164 0.55% FabArray::Saxpy() 20 0.01833 0.01976 0.02156 0.55% FabArray::setDomainBndry() 41 0.01489 0.01881 0.02135 0.54% Castro::Castro() 1 0.01591 0.01676 0.0181 0.46% VisMF::Write(FabArray) 2 0.01041 0.01319 0.01648 0.42% Castro::post_timestep() 10 0.01598 0.01613 0.01625 0.41% Castro::construct_old_source() 50 0.01432 0.01556 0.01623 0.41% Castro::construct_old_gravity_source() 10 0.01419 0.01546 0.01615 0.41% Castro::check_for_nan() 20 0.01269 0.01401 0.01561 0.40% MultiFab::contains_nan() 20 0.01266 0.01398 0.01557 0.40% Castro::initMFs() 1 0.008946 0.009622 0.01117 0.28% Castro::computeNewDt() 9 0.009408 0.00943 0.009449 0.24% AmrLevel::AmrLevel(dm) 1 0.007289 0.007483 0.007993 0.20% Other 260 0.02599 0.02985 0.0328 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 30 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8663 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6789 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4562 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 259 KiB 283 KiB 304 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 205 KiB 218 KiB 231 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 50 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 67 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-32-g4a3a5ff9052a) finalized