Initializing AMReX (24.11-32-g4a3a5ff9052a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-32-g4a3a5ff9052a) initialized Starting run at 06:19:08 UTC on 2024-11-29. Successfully read inputs file ... Castro git describe: 24.11-14-g362e87f03 AMReX git describe: 24.11-32-g4a3a5ff90 Microphysics git describe: 24.11-11-g48da3f88 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015134989 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.330816448 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327673693 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.308136827 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.302810124 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355744999 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296828204 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.288688833 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.286934888 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.284455757 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.284404298 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007786019 seconds Ending run at 06:19:11 UTC on 2024-11-29. Run time = 3.246813875 Run time without initialization = 3.07892449 Average number of zones advanced per microsecond: 0.851 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2465 ... 3.2467 ... 3.2468 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0419 2.1193 2.1692 66.81% Gravity::make_radial_gravity() 21 0.2919 0.2984 0.3131 9.64% check_for_negative_density() 10 0.03654 0.09235 0.1735 5.34% Castro::initData() 1 0.03824 0.0717 0.1026 3.16% Castro::estTimeStep() 21 0.02399 0.06045 0.09778 3.01% amrex::Copy() 193 0.06773 0.08066 0.08938 2.75% FabArray::ParallelCopy_finish() 41 0.03643 0.04822 0.08379 2.58% FabArray::setVal() 143 0.05439 0.06713 0.07358 2.27% Castro::normalize_species() 62 0.04471 0.04626 0.04829 1.49% Castro::reset_internal_energy(Fab) 1008 0.04196 0.04498 0.0474 1.46% FabArray::ParallelCopy_nowait() 41 0.03767 0.04134 0.04298 1.32% StateData::FillBoundary(geom) 41 0.02968 0.03297 0.03741 1.15% FillPatchIterator::Initialize 41 0.02757 0.03325 0.03553 1.09% Gravity::interpolate_monopole_grav() 21 0.02685 0.02715 0.02754 0.85% Castro::construct_new_gravity_source() 10 0.02304 0.02457 0.02732 0.84% Castro::computeTemp() 63 0.01695 0.01791 0.0185 0.57% Castro::initialize_do_advance() 10 0.01225 0.01691 0.01827 0.56% FabArray::Saxpy() 20 0.01094 0.01248 0.0138 0.43% Castro::initialize_advance() 10 0.005203 0.01052 0.01345 0.41% VisMF::Write(FabArray) 2 0.009489 0.009992 0.01255 0.39% Amr::writePlotFile() 2 0.008231 0.01132 0.01251 0.39% MultiFab::contains_nan() 20 0.01049 0.01128 0.01244 0.38% FabArray::setDomainBndry() 41 0.007274 0.01011 0.01133 0.35% Castro::construct_old_gravity_source() 10 0.007129 0.009363 0.009985 0.31% Castro::initMFs() 1 0.006784 0.007387 0.008771 0.27% Castro::construct_new_source() 50 0.005596 0.005885 0.006043 0.19% main() 1 0.003875 0.004093 0.004243 0.13% Gravity::get_new_grav_vector() 11 0.002873 0.003507 0.003987 0.12% Amr::coarseTimeStep() 10 0.0007553 0.002629 0.003551 0.11% Gravity::get_old_grav_vector() 10 0.001647 0.002134 0.002554 0.08% Castro::finalize_do_advance() 10 0.0005088 0.001125 0.001659 0.05% AmrLevel::FillPatch() 41 0.000788 0.0009506 0.001113 0.03% Amr::timeStep() 10 0.0001684 0.0002105 0.0003768 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002696 0.0002924 0.0003094 0.01% Castro::do_advance_ctu() 10 0.0001376 0.0001585 0.0001816 0.01% Castro::clean_state() 62 0.0001478 0.0001597 0.0001727 0.01% StateDataPhysBCFunct::() 41 9.777e-05 0.0001035 0.0001094 0.00% FillPatchIterator::FillFromLevel0() 41 9.019e-05 9.877e-05 0.000108 0.00% FabArray::ParallelCopy() 41 7.816e-05 9.359e-05 0.0001063 0.00% Castro::Castro() 1 5.358e-05 8.122e-05 0.0001052 0.00% Castro::do_old_sources() 10 7.456e-05 9.036e-05 9.955e-05 0.00% Amr::FinalizeInit() 1 3.944e-06 1.53e-05 8.454e-05 0.00% Castro::construct_old_source() 50 4.576e-05 6.928e-05 8.273e-05 0.00% Castro::do_new_sources() 10 5.214e-05 6.027e-05 6.682e-05 0.00% FillPatchSingleLevel 41 5.527e-05 6.001e-05 6.42e-05 0.00% Castro::subcycle_advance_ctu() 10 4.705e-05 5.005e-05 5.851e-05 0.00% Amr::defBaseLevel() 1 3.254e-05 4.638e-05 5.581e-05 0.00% Castro::apply_source_to_state() 20 3.966e-05 4.686e-05 5.347e-05 0.00% Castro::advance() 10 3.643e-05 4.422e-05 5.119e-05 0.00% Castro::construct_new_gravity() 10 3.104e-05 3.653e-05 5.073e-05 0.00% Castro::construct_old_gravity() 10 3.306e-05 3.909e-05 4.704e-05 0.00% Castro::expand_state() 10 2.44e-05 2.787e-05 3.505e-05 0.00% Castro::check_for_nan() 20 2.519e-05 2.787e-05 3.107e-05 0.00% Castro::post_timestep() 10 1.332e-05 1.564e-05 1.763e-05 0.00% Castro::post_init() 1 8.191e-06 1.098e-05 1.512e-05 0.00% Castro::computeNewDt() 9 8.375e-06 9.532e-06 1.033e-05 0.00% Amr::InitializeInit() 1 3.067e-06 3.879e-06 6.41e-06 0.00% Castro::computeInitialDt() 2 2.878e-06 3.999e-06 5.004e-06 0.00% Amr::init() 1 1.562e-06 2.003e-06 2.548e-06 0.00% Amr::initialInit() 1 1.292e-06 1.712e-06 2.032e-06 0.00% Other 261 0.01587 0.01855 0.01997 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.246 3.247 3.247 100.00% Amr::coarseTimeStep() 10 3.067 3.067 3.067 94.46% Amr::timeStep() 10 3.053 3.054 3.056 94.13% Castro::advance() 10 3.038 3.039 3.039 93.60% Castro::subcycle_advance_ctu() 10 2.963 2.967 2.982 91.83% Castro::do_advance_ctu() 10 2.963 2.967 2.982 91.83% Castro::construct_ctu_hydro_source() 10 2.227 2.233 2.237 68.89% Gravity::make_radial_gravity() 21 0.3091 0.315 0.3273 10.08% AmrLevel::FillPatch() 41 0.1868 0.1993 0.2106 6.49% Gravity::get_new_grav_vector() 11 0.2065 0.208 0.2094 6.45% Castro::construct_old_gravity() 10 0.1858 0.1907 0.2013 6.20% Gravity::get_old_grav_vector() 10 0.185 0.19 0.2007 6.18% FillPatchIterator::Initialize 41 0.157 0.1663 0.1864 5.74% Castro::construct_new_gravity() 10 0.1829 0.1844 0.1855 5.71% check_for_negative_density() 10 0.03654 0.09235 0.1735 5.34% Castro::initialize_do_advance() 10 0.1561 0.1637 0.1677 5.16% Amr::init() 1 0.1673 0.1675 0.1675 5.16% Amr::initialInit() 1 0.1506 0.1513 0.152 4.68% FillPatchIterator::FillFromLevel0() 41 0.114 0.123 0.1516 4.67% FillPatchSingleLevel 41 0.1139 0.1229 0.1515 4.67% Amr::InitializeInit() 1 0.06009 0.09306 0.1237 3.81% Amr::defBaseLevel() 1 0.06009 0.09306 0.1237 3.81% FabArray::ParallelCopy() 41 0.07841 0.08974 0.1217 3.75% Castro::clean_state() 62 0.1102 0.1148 0.12 3.70% Castro::expand_state() 10 0.1015 0.1101 0.1179 3.63% Castro::initData() 1 0.04157 0.07544 0.1066 3.28% Castro::estTimeStep() 21 0.02399 0.06045 0.09778 3.01% Castro::do_old_sources() 10 0.09278 0.09501 0.09729 3.00% Amr::FinalizeInit() 1 0.02809 0.05822 0.09051 2.79% amrex::Copy() 193 0.06773 0.08066 0.08938 2.75% FabArray::ParallelCopy_finish() 41 0.03643 0.04822 0.08379 2.58% FabArray::setVal() 143 0.05439 0.06713 0.07358 2.27% Castro::initialize_advance() 10 0.05295 0.06836 0.07308 2.25% Castro::do_new_sources() 10 0.06031 0.06451 0.07132 2.20% Castro::computeTemp() 63 0.05918 0.06318 0.06621 2.04% Castro::computeInitialDt() 2 0.00231 0.03298 0.06598 2.03% Castro::normalize_species() 62 0.04471 0.04626 0.04829 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04223 0.04527 0.04771 1.47% Castro::reset_internal_energy(Fab) 1008 0.04196 0.04498 0.0474 1.46% FabArray::ParallelCopy_nowait() 41 0.0378 0.04143 0.04307 1.33% StateDataPhysBCFunct::() 41 0.02978 0.03307 0.03752 1.16% StateData::FillBoundary(geom) 41 0.02968 0.03297 0.03741 1.15% Castro::construct_new_source() 50 0.02886 0.03045 0.03321 1.02% Gravity::interpolate_monopole_grav() 21 0.02685 0.02715 0.02754 0.85% Castro::construct_new_gravity_source() 10 0.02304 0.02457 0.02732 0.84% Castro::post_init() 1 0.02425 0.02493 0.02576 0.79% Amr::writePlotFile() 2 0.02319 0.02405 0.02479 0.76% Castro::finalize_do_advance() 10 0.01218 0.01996 0.02429 0.75% Castro::post_timestep() 10 0.01483 0.01566 0.01698 0.52% Castro::apply_source_to_state() 20 0.01099 0.01253 0.01386 0.43% FabArray::Saxpy() 20 0.01094 0.01248 0.0138 0.43% VisMF::Write(FabArray) 2 0.009489 0.009992 0.01255 0.39% Castro::check_for_nan() 20 0.01051 0.01131 0.01247 0.38% MultiFab::contains_nan() 20 0.01049 0.01128 0.01244 0.38% Castro::Castro() 1 0.01071 0.01134 0.01236 0.38% FabArray::setDomainBndry() 41 0.007274 0.01011 0.01133 0.35% Castro::construct_old_source() 50 0.007174 0.009432 0.01007 0.31% Castro::construct_old_gravity_source() 10 0.007129 0.009363 0.009985 0.31% Castro::initMFs() 1 0.006784 0.007387 0.008771 0.27% Castro::computeNewDt() 9 0.008646 0.008654 0.008664 0.27% Other 261 0.02615 0.02963 0.03183 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 39 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6762 KiB 6766 KiB 6767 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4558 KiB 4565 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 214 KiB 230 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2807 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 242 KiB 247 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-32-g4a3a5ff9052a) finalized