Initializing AMReX (24.11-33-gc35aad273352)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.11-33-gc35aad273352) initialized Starting run at 15:33:55 UTC on 2024-11-30. Successfully read inputs file ... Castro git describe: 24.11-14-g362e87f03 AMReX git describe: 24.11-33-gc35aad273 Microphysics git describe: 24.11-11-g48da3f88 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016485246 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.331554872 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.322095774 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317867322 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305356379 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356389734 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.299509163 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284927754 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301128226 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298496295 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.290630822 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008808459 seconds Ending run at 15:33:58 UTC on 2024-11-30. Run time = 3.3052099 Run time without initialization = 3.122051703 Average number of zones advanced per microsecond: 0.840 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.3037 ... 3.3048 ... 3.3053 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0467 2.1197 2.1869 66.16% Gravity::make_radial_gravity() 21 0.2958 0.3019 0.3157 9.55% check_for_negative_density() 10 0.05635 0.1271 0.1997 6.04% Castro::initData() 1 0.03802 0.07573 0.115 3.48% Castro::estTimeStep() 21 0.03289 0.07004 0.1112 3.36% FabArray::ParallelCopy_finish() 41 0.03888 0.05577 0.09592 2.90% amrex::Copy() 193 0.06972 0.07954 0.08787 2.66% FabArray::setVal() 143 0.05599 0.06535 0.07244 2.19% Castro::normalize_species() 62 0.04584 0.04702 0.05038 1.52% Castro::reset_internal_energy(Fab) 1008 0.03987 0.0452 0.04787 1.45% FabArray::ParallelCopy_nowait() 41 0.03656 0.04115 0.04278 1.29% StateData::FillBoundary(geom) 41 0.03047 0.03285 0.03623 1.10% FillPatchIterator::Initialize 41 0.02822 0.03306 0.0349 1.06% Gravity::interpolate_monopole_grav() 21 0.02703 0.02738 0.02781 0.84% Castro::construct_new_gravity_source() 10 0.02307 0.02461 0.02679 0.81% Castro::computeTemp() 63 0.01676 0.01831 0.01938 0.59% Castro::initialize_do_advance() 10 0.01164 0.01664 0.01868 0.57% Amr::writePlotFile() 2 0.009731 0.01207 0.01326 0.40% FabArray::Saxpy() 20 0.009808 0.01222 0.01319 0.40% VisMF::Write(FabArray) 2 0.009022 0.00986 0.0131 0.40% FabArray::setDomainBndry() 41 0.007696 0.01091 0.01309 0.40% Castro::initialize_advance() 10 0.00542 0.0105 0.01301 0.39% MultiFab::contains_nan() 20 0.01084 0.01129 0.01183 0.36% Castro::construct_old_gravity_source() 10 0.007141 0.009287 0.009921 0.30% Castro::initMFs() 1 0.006467 0.007216 0.007741 0.23% Castro::construct_new_source() 50 0.005381 0.005959 0.006085 0.18% main() 1 0.003303 0.004417 0.004872 0.15% Gravity::get_new_grav_vector() 11 0.002901 0.003622 0.003852 0.12% Amr::coarseTimeStep() 10 0.001157 0.00169 0.003285 0.10% Gravity::get_old_grav_vector() 10 0.001623 0.002111 0.002478 0.07% Castro::finalize_do_advance() 10 0.0004754 0.001016 0.001116 0.03% AmrLevel::FillPatch() 41 0.0007207 0.0008713 0.0009946 0.03% Amr::timeStep() 10 0.0001492 0.0002154 0.000426 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002833 0.0002954 0.0003079 0.01% Castro::do_advance_ctu() 10 0.0001386 0.0001623 0.000177 0.01% Castro::clean_state() 62 0.0001367 0.0001492 0.0001615 0.00% Castro::do_old_sources() 10 6.916e-05 9.203e-05 0.0001106 0.00% FillPatchIterator::FillFromLevel0() 41 9.436e-05 0.0001007 0.0001058 0.00% StateDataPhysBCFunct::() 41 9.228e-05 9.943e-05 0.0001045 0.00% FabArray::ParallelCopy() 41 8.259e-05 9.301e-05 0.0001029 0.00% Amr::FinalizeInit() 1 3.793e-06 1.55e-05 8.877e-05 0.00% Castro::Castro() 1 5.297e-05 6.919e-05 8.184e-05 0.00% Castro::construct_old_source() 50 4.745e-05 6.895e-05 7.693e-05 0.00% FillPatchSingleLevel 41 5.693e-05 6.471e-05 7.101e-05 0.00% Castro::apply_source_to_state() 20 3.123e-05 4.684e-05 6.606e-05 0.00% Castro::do_new_sources() 10 4.495e-05 5.658e-05 6.067e-05 0.00% Castro::subcycle_advance_ctu() 10 4.182e-05 5.191e-05 6.028e-05 0.00% Castro::advance() 10 3.829e-05 4.487e-05 5.64e-05 0.00% Amr::defBaseLevel() 1 2.924e-05 3.757e-05 4.905e-05 0.00% Castro::construct_old_gravity() 10 3.47e-05 4.008e-05 4.675e-05 0.00% Castro::construct_new_gravity() 10 3.125e-05 3.728e-05 4.431e-05 0.00% Castro::expand_state() 10 2.115e-05 2.738e-05 3.561e-05 0.00% Castro::check_for_nan() 20 2.644e-05 2.715e-05 2.776e-05 0.00% Castro::post_timestep() 10 1.315e-05 1.515e-05 1.702e-05 0.00% Castro::post_init() 1 9.148e-06 1.083e-05 1.268e-05 0.00% Castro::computeNewDt() 9 9.033e-06 1.013e-05 1.185e-05 0.00% Amr::InitializeInit() 1 2.645e-06 3.497e-06 5.846e-06 0.00% Castro::computeInitialDt() 2 3.474e-06 3.969e-06 4.745e-06 0.00% Amr::init() 1 1.941e-06 2.268e-06 2.671e-06 0.00% Amr::initialInit() 1 1.269e-06 1.712e-06 2.247e-06 0.00% Other 261 0.0158 0.01853 0.02035 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.304 3.305 3.305 100.00% Amr::coarseTimeStep() 10 3.108 3.108 3.108 94.05% Amr::timeStep() 10 3.096 3.097 3.098 93.72% Castro::advance() 10 3.081 3.081 3.081 93.23% Castro::subcycle_advance_ctu() 10 3.004 3.01 3.025 91.51% Castro::do_advance_ctu() 10 3.004 3.01 3.025 91.51% Castro::construct_ctu_hydro_source() 10 2.264 2.268 2.27 68.68% Gravity::make_radial_gravity() 21 0.3121 0.3179 0.3294 9.97% AmrLevel::FillPatch() 41 0.1948 0.2064 0.2255 6.82% Gravity::get_new_grav_vector() 11 0.2126 0.2154 0.2173 6.58% check_for_negative_density() 10 0.05635 0.1271 0.1997 6.04% FillPatchIterator::Initialize 41 0.1602 0.1742 0.1996 6.04% Castro::construct_old_gravity() 10 0.1835 0.1868 0.195 5.90% Gravity::get_old_grav_vector() 10 0.1828 0.1862 0.1943 5.88% Castro::construct_new_gravity() 10 0.1871 0.1892 0.1905 5.76% Amr::init() 1 0.1826 0.1827 0.1828 5.53% Castro::initialize_do_advance() 10 0.1634 0.1696 0.176 5.32% Amr::initialInit() 1 0.1659 0.1671 0.1678 5.08% FillPatchIterator::FillFromLevel0() 41 0.1127 0.1302 0.1637 4.95% FillPatchSingleLevel 41 0.1126 0.1301 0.1636 4.95% Amr::InitializeInit() 1 0.05937 0.09672 0.1369 4.14% Amr::defBaseLevel() 1 0.05937 0.09672 0.1369 4.14% FabArray::ParallelCopy() 41 0.08023 0.09711 0.1327 4.01% Castro::expand_state() 10 0.1086 0.1162 0.1301 3.94% Castro::clean_state() 62 0.1077 0.1162 0.1196 3.62% Castro::initData() 1 0.0416 0.07944 0.1189 3.60% Castro::estTimeStep() 21 0.03289 0.07004 0.1112 3.36% Amr::FinalizeInit() 1 0.02955 0.07033 0.1083 3.28% Castro::do_old_sources() 10 0.09367 0.09602 0.09832 2.97% FabArray::ParallelCopy_finish() 41 0.03888 0.05577 0.09592 2.90% amrex::Copy() 193 0.06972 0.07954 0.08787 2.66% Castro::computeInitialDt() 2 0.002301 0.04244 0.07981 2.41% Castro::initialize_advance() 10 0.05235 0.06743 0.07349 2.22% FabArray::setVal() 143 0.05599 0.06535 0.07244 2.19% Castro::do_new_sources() 10 0.05997 0.06395 0.07012 2.12% Castro::computeTemp() 63 0.05692 0.06381 0.06755 2.04% Castro::normalize_species() 62 0.04584 0.04702 0.05038 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04015 0.0455 0.04817 1.46% Castro::reset_internal_energy(Fab) 1008 0.03987 0.0452 0.04787 1.45% FabArray::ParallelCopy_nowait() 41 0.03668 0.04124 0.04287 1.30% StateDataPhysBCFunct::() 41 0.03057 0.03295 0.03633 1.10% StateData::FillBoundary(geom) 41 0.03047 0.03285 0.03623 1.10% Castro::construct_new_source() 50 0.02912 0.03057 0.03284 0.99% Castro::post_init() 1 0.02648 0.02741 0.02809 0.85% Gravity::interpolate_monopole_grav() 21 0.02703 0.02738 0.02781 0.84% Castro::construct_new_gravity_source() 10 0.02307 0.02461 0.02679 0.81% Amr::writePlotFile() 2 0.02387 0.02461 0.02557 0.77% Castro::finalize_do_advance() 10 0.01414 0.02021 0.02395 0.72% Castro::post_timestep() 10 0.0149 0.01595 0.01664 0.50% Castro::apply_source_to_state() 20 0.00984 0.01227 0.01324 0.40% FabArray::Saxpy() 20 0.009808 0.01222 0.01319 0.40% VisMF::Write(FabArray) 2 0.009022 0.00986 0.0131 0.40% FabArray::setDomainBndry() 41 0.007696 0.01091 0.01309 0.40% Castro::Castro() 1 0.009409 0.01106 0.01201 0.36% Castro::check_for_nan() 20 0.01087 0.01131 0.01186 0.36% MultiFab::contains_nan() 20 0.01084 0.01129 0.01183 0.36% Castro::construct_old_source() 50 0.007188 0.009356 0.009995 0.30% Castro::construct_old_gravity_source() 10 0.007141 0.009287 0.009921 0.30% Castro::computeNewDt() 9 0.008404 0.008408 0.008413 0.25% Castro::initMFs() 1 0.006467 0.007216 0.007741 0.23% Other 261 0.02594 0.02977 0.03268 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6739 KiB 6744 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4541 KiB 4550 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 236 KiB 262 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2792 KiB 2796 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 240 KiB 245 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 45 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.11-33-gc35aad273352) finalized