Initializing AMReX (24.12-1-g8c2c27c74610)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-1-g8c2c27c74610) initialized Starting run at 06:21:09 UTC on 2024-12-02. Successfully read inputs file ... Castro git describe: 24.12 AMReX git describe: 24.12-1-g8c2c27c74 Microphysics git describe: 24.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014572302 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333026521 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.32637903 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.2961311 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.336384887 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.302836388 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.286347517 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.286558623 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.286081551 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.287727723 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.288388922 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007426667 seconds Ending run at 06:21:13 UTC on 2024-12-02. Run time = 3.597370026 Run time without initialization = 3.041826587 Average number of zones advanced per microsecond: 0.862 Average number of zones advanced per microsecond per rank: 0.108 TinyProfiler total time across processes [min...avg...max]: 3.5972 ... 3.5973 ... 3.5974 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0387 2.0954 2.1671 60.24% Amr::InitAmr() 1 0.0001845 0.04891 0.3897 10.83% DistributionMapping::LeastUsedCPUs() 1 2.609e-05 0.3408 0.3895 10.83% Gravity::make_radial_gravity() 21 0.2887 0.2942 0.306 8.50% check_for_negative_density() 10 0.05036 0.1213 0.1782 4.95% Castro::initData() 1 0.0376 0.07019 0.1045 2.91% Castro::estTimeStep() 21 0.02685 0.06257 0.09476 2.63% FabArray::ParallelCopy_finish() 41 0.03632 0.04873 0.08545 2.38% amrex::Copy() 193 0.05586 0.07193 0.08026 2.23% FabArray::setVal() 143 0.03956 0.05695 0.0639 1.78% Castro::normalize_species() 62 0.04533 0.04806 0.0536 1.49% Castro::reset_internal_energy(Fab) 1008 0.04354 0.04622 0.04778 1.33% FabArray::ParallelCopy_nowait() 41 0.03239 0.03774 0.03993 1.11% StateData::FillBoundary(geom) 41 0.02998 0.03185 0.03646 1.01% FillPatchIterator::Initialize 41 0.02805 0.03067 0.03226 0.90% Gravity::interpolate_monopole_grav() 21 0.02694 0.02743 0.02784 0.77% Castro::construct_new_gravity_source() 10 0.01868 0.02194 0.02436 0.68% Castro::computeTemp() 63 0.01739 0.01838 0.01874 0.52% Castro::initialize_do_advance() 10 0.01187 0.0147 0.01637 0.45% Amr::writePlotFile() 2 0.0077 0.01005 0.01208 0.34% FabArray::Saxpy() 20 0.008132 0.01052 0.01183 0.33% VisMF::Write(FabArray) 2 0.008748 0.00941 0.01174 0.33% Castro::initialize_advance() 10 0.005755 0.008643 0.0114 0.32% MultiFab::contains_nan() 20 0.009635 0.01052 0.01114 0.31% FabArray::setDomainBndry() 41 0.007183 0.009067 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.005534 0.008027 0.008896 0.25% Castro::construct_new_source() 50 0.004873 0.005507 0.005838 0.16% main() 1 0.003897 0.00397 0.004087 0.11% Amr::coarseTimeStep() 10 0.001263 0.002336 0.003868 0.11% Gravity::get_new_grav_vector() 11 0.002593 0.003265 0.003618 0.10% Gravity::get_old_grav_vector() 10 0.001802 0.002054 0.002517 0.07% Castro::finalize_do_advance() 10 0.0004209 0.0008229 0.001001 0.03% AmrLevel::FillPatch() 41 0.0007195 0.0007961 0.0008351 0.02% Amr::timeStep() 10 0.0001472 0.0002106 0.0003997 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002693 0.00028 0.0002942 0.01% Castro::clean_state() 62 0.0001304 0.0001441 0.0001622 0.00% Castro::do_advance_ctu() 10 0.0001294 0.0001433 0.0001603 0.00% FillPatchIterator::FillFromLevel0() 41 8.23e-05 9.365e-05 0.0001037 0.00% StateDataPhysBCFunct::() 41 8.521e-05 9.185e-05 9.945e-05 0.00% Castro::do_old_sources() 10 6.985e-05 7.978e-05 9.499e-05 0.00% Castro::Castro() 1 5.128e-05 7.637e-05 9.264e-05 0.00% FabArray::ParallelCopy() 41 8.121e-05 8.457e-05 8.722e-05 0.00% Castro::construct_old_source() 50 4.71e-05 6.428e-05 8.38e-05 0.00% Amr::FinalizeInit() 1 3.097e-06 1.381e-05 8.136e-05 0.00% FillPatchSingleLevel 41 5.395e-05 5.904e-05 6.415e-05 0.00% Castro::do_new_sources() 10 4.635e-05 5.514e-05 6.31e-05 0.00% Castro::apply_source_to_state() 20 3.57e-05 4.274e-05 5.627e-05 0.00% Castro::subcycle_advance_ctu() 10 4.051e-05 4.481e-05 5.141e-05 0.00% Castro::advance() 10 3.473e-05 3.972e-05 4.523e-05 0.00% Amr::defBaseLevel() 1 3.163e-05 3.615e-05 4.056e-05 0.00% Castro::construct_new_gravity() 10 2.88e-05 3.263e-05 3.986e-05 0.00% Castro::construct_old_gravity() 10 3.173e-05 3.603e-05 3.933e-05 0.00% Castro::check_for_nan() 20 2.366e-05 2.601e-05 2.839e-05 0.00% Castro::expand_state() 10 2.144e-05 2.393e-05 2.605e-05 0.00% Castro::post_timestep() 10 1.219e-05 1.5e-05 2.19e-05 0.00% Castro::post_init() 1 7.456e-06 8.68e-06 1.313e-05 0.00% Castro::computeNewDt() 9 8.519e-06 9.673e-06 1.099e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.672e-06 5.499e-06 7.504e-06 0.00% Amr::InitializeInit() 1 2.623e-06 3.392e-06 5.547e-06 0.00% Castro::computeInitialDt() 2 3.365e-06 3.675e-06 4.622e-06 0.00% Amr::init() 1 1.827e-06 2.247e-06 2.837e-06 0.00% Amr::initialInit() 1 1.362e-06 1.644e-06 2.201e-06 0.00% Other 259 0.02063 0.02268 0.02389 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.597 3.597 3.597 100.00% Amr::coarseTimeStep() 10 3.03 3.03 3.03 84.24% Amr::timeStep() 10 3.017 3.018 3.019 83.93% Castro::advance() 10 3.001 3.001 3.002 83.44% Castro::subcycle_advance_ctu() 10 2.933 2.938 2.951 82.04% Castro::do_advance_ctu() 10 2.933 2.938 2.951 82.04% Castro::construct_ctu_hydro_source() 10 2.232 2.238 2.241 62.28% Amr::init() 1 0.1657 0.5065 0.5552 15.43% Amr::initialInit() 1 0.151 0.492 0.5411 15.04% Amr::InitializeInit() 1 0.05904 0.4304 0.5136 14.28% Amr::defBaseLevel() 1 0.05903 0.4304 0.5136 14.28% Amr::InitAmr() 1 0.0001873 0.04891 0.3897 10.83% DistributionMapping::SFCProcessorMapDoIt() 1 3.398e-05 0.3408 0.3895 10.83% DistributionMapping::LeastUsedCPUs() 1 2.609e-05 0.3408 0.3895 10.83% Gravity::make_radial_gravity() 21 0.3045 0.3097 0.3185 8.85% AmrLevel::FillPatch() 41 0.1763 0.1884 0.2112 5.87% Gravity::get_new_grav_vector() 11 0.2052 0.206 0.207 5.75% Castro::construct_old_gravity() 10 0.1786 0.182 0.1879 5.22% Gravity::get_old_grav_vector() 10 0.178 0.1814 0.1874 5.21% FillPatchIterator::Initialize 41 0.1459 0.1585 0.1861 5.17% Castro::construct_new_gravity() 10 0.1819 0.1827 0.1834 5.10% check_for_negative_density() 10 0.05036 0.1213 0.1782 4.95% Castro::initialize_do_advance() 10 0.1523 0.1567 0.1642 4.56% FillPatchIterator::FillFromLevel0() 41 0.1069 0.1187 0.1499 4.17% FillPatchSingleLevel 41 0.1068 0.1186 0.1498 4.16% Castro::clean_state() 62 0.1124 0.1179 0.1236 3.43% FabArray::ParallelCopy() 41 0.07552 0.08664 0.118 3.28% Castro::expand_state() 10 0.1016 0.1061 0.1179 3.28% Castro::initData() 1 0.04161 0.07406 0.1086 3.02% Castro::estTimeStep() 21 0.02685 0.06257 0.09476 2.63% Amr::FinalizeInit() 1 0.02736 0.0616 0.09398 2.61% Castro::do_old_sources() 10 0.08408 0.08826 0.09379 2.61% FabArray::ParallelCopy_finish() 41 0.03632 0.04873 0.08545 2.38% amrex::Copy() 193 0.05586 0.07193 0.08026 2.23% Castro::computeInitialDt() 2 0.002307 0.03678 0.069 1.92% Castro::computeTemp() 63 0.06121 0.06488 0.0668 1.86% Castro::initialize_advance() 10 0.0469 0.06056 0.06545 1.82% Castro::do_new_sources() 10 0.05063 0.05887 0.06486 1.80% FabArray::setVal() 143 0.03956 0.05695 0.0639 1.78% Castro::normalize_species() 62 0.04533 0.04806 0.0536 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04381 0.0465 0.04806 1.34% Castro::reset_internal_energy(Fab) 1008 0.04354 0.04622 0.04778 1.33% FabArray::ParallelCopy_nowait() 41 0.03248 0.03783 0.04001 1.11% StateDataPhysBCFunct::() 41 0.03007 0.03194 0.03655 1.02% StateData::FillBoundary(geom) 41 0.02998 0.03185 0.03646 1.01% Castro::construct_new_source() 50 0.02356 0.02744 0.0302 0.84% Gravity::interpolate_monopole_grav() 21 0.02694 0.02743 0.02784 0.77% Castro::finalize_do_advance() 10 0.01196 0.01799 0.026 0.72% Castro::post_init() 1 0.02389 0.02438 0.02483 0.69% Castro::construct_new_gravity_source() 10 0.01868 0.02194 0.02436 0.68% Amr::writePlotFile() 2 0.02164 0.02203 0.02245 0.62% Castro::post_timestep() 10 0.01589 0.01654 0.01749 0.49% Castro::apply_source_to_state() 20 0.008169 0.01057 0.01189 0.33% FabArray::Saxpy() 20 0.008132 0.01052 0.01183 0.33% VisMF::Write(FabArray) 2 0.008748 0.00941 0.01174 0.33% Castro::check_for_nan() 20 0.009661 0.01055 0.01117 0.31% MultiFab::contains_nan() 20 0.009635 0.01052 0.01114 0.31% Castro::Castro() 1 0.008411 0.01032 0.01096 0.30% FabArray::setDomainBndry() 41 0.007183 0.009067 0.01039 0.29% Castro::construct_old_source() 50 0.005589 0.008091 0.008957 0.25% Castro::construct_old_gravity_source() 10 0.005534 0.008027 0.008896 0.25% Castro::computeNewDt() 9 0.00862 0.008637 0.008658 0.24% Other 259 0.0292 0.03228 0.03413 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 12 MiB 13 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 7726 KiB 7734 KiB 7737 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6029 KiB 6035 KiB 6037 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 6363 KiB 6369 KiB 6370 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4074 KiB 4080 KiB 4100 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 186 KiB 198 KiB 223 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 15 KiB 18 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2500 KiB 2502 KiB 2503 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 215 KiB 219 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 32 KiB 37 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1808 KiB 1810 KiB 1811 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 64 KiB 66 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-1-g8c2c27c74610) finalized