Initializing AMReX (24.12-4-g81cc845dc1ad)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-4-g81cc845dc1ad) initialized Starting run at 06:19:09 UTC on 2024-12-03. Successfully read inputs file ... Castro git describe: 24.12 AMReX git describe: 24.12-4-g81cc845dc Microphysics git describe: 24.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019720143 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.411765259 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.38578989 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.366427976 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.380465763 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.360644272 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.361815245 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.360385681 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.360082662 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.360981933 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.365343083 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012747984 seconds Ending run at 06:19:13 UTC on 2024-12-03. Run time = 3.943271018 Run time without initialization = 3.734436575 Average number of zones advanced per microsecond: 0.702 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9426 ... 3.9431 ... 3.9433 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1959 2.4093 2.6091 66.16% check_for_negative_density() 10 0.009273 0.2136 0.4355 11.04% Gravity::make_radial_gravity() 21 0.2982 0.3134 0.342 8.67% amrex::Copy() 193 0.1018 0.1223 0.1341 3.40% Castro::initData() 1 0.0373 0.07522 0.1268 3.21% Castro::estTimeStep() 21 0.03673 0.08115 0.117 2.97% FabArray::setVal() 143 0.09853 0.1045 0.109 2.76% FabArray::ParallelCopy_finish() 41 0.05686 0.06178 0.07554 1.92% FabArray::ParallelCopy_nowait() 41 0.05909 0.06686 0.07155 1.81% FillPatchIterator::Initialize 41 0.04957 0.05614 0.06233 1.58% Castro::normalize_species() 62 0.04746 0.05481 0.06043 1.53% Castro::reset_internal_energy(Fab) 1008 0.04944 0.05164 0.0542 1.37% StateData::FillBoundary(geom) 41 0.03495 0.04077 0.04747 1.20% Castro::construct_new_gravity_source() 10 0.03027 0.03266 0.03647 0.92% Castro::initialize_do_advance() 10 0.0241 0.02761 0.03173 0.80% Gravity::interpolate_monopole_grav() 21 0.02724 0.0277 0.02836 0.72% FabArray::Saxpy() 20 0.01853 0.02052 0.02212 0.56% Castro::computeTemp() 63 0.0197 0.02087 0.02196 0.56% FabArray::setDomainBndry() 41 0.01691 0.01925 0.02123 0.54% Castro::construct_old_gravity_source() 10 0.01645 0.01743 0.01835 0.47% Castro::initialize_advance() 10 0.01582 0.01676 0.01727 0.44% VisMF::Write(FabArray) 2 0.01234 0.01354 0.01701 0.43% MultiFab::contains_nan() 20 0.01343 0.01545 0.01692 0.43% Amr::writePlotFile() 2 0.009677 0.01337 0.01467 0.37% Castro::initMFs() 1 0.008404 0.009711 0.01116 0.28% Castro::construct_new_source() 50 0.007889 0.00899 0.009956 0.25% Castro::enforce_min_density() 62 0.006735 0.007485 0.008295 0.21% main() 1 0.006827 0.007252 0.007553 0.19% Gravity::get_new_grav_vector() 11 0.003909 0.005077 0.00618 0.16% Amr::coarseTimeStep() 10 0.001644 0.003461 0.00542 0.14% Gravity::get_old_grav_vector() 10 0.003021 0.003256 0.0036 0.09% AmrLevel::FillPatch() 41 0.0009957 0.001117 0.001403 0.04% Castro::finalize_do_advance() 10 0.00124 0.001267 0.001295 0.03% Amr::timeStep() 10 0.0001546 0.0002524 0.0004407 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003335 0.0003401 0.0003507 0.01% Castro::do_advance_ctu() 10 0.0001896 0.0002273 0.0002565 0.01% Castro::clean_state() 62 0.0001822 0.0002057 0.0002406 0.01% Castro::do_old_sources() 10 0.000133 0.0001444 0.0001629 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001408 0.0001473 0.0001534 0.00% FabArray::ParallelCopy() 41 0.0001238 0.0001355 0.0001513 0.00% Castro::Castro() 1 8.275e-05 0.0001095 0.0001392 0.00% StateDataPhysBCFunct::() 41 0.0001168 0.0001264 0.0001346 0.00% Castro::construct_old_source() 50 0.0001075 0.0001161 0.0001295 0.00% FillPatchSingleLevel 41 8.628e-05 9.229e-05 9.691e-05 0.00% Castro::subcycle_advance_ctu() 10 6.144e-05 7.578e-05 9.552e-05 0.00% Amr::FinalizeInit() 1 3.941e-06 1.725e-05 9.231e-05 0.00% Castro::do_new_sources() 10 7.651e-05 8.545e-05 9.022e-05 0.00% Castro::apply_source_to_state() 20 6.133e-05 7.365e-05 8.985e-05 0.00% Castro::expand_state() 10 3.468e-05 5.462e-05 8.925e-05 0.00% Castro::advance() 10 5.15e-05 6.207e-05 7.636e-05 0.00% Castro::construct_old_gravity() 10 5e-05 5.434e-05 6.452e-05 0.00% Castro::construct_new_gravity() 10 3.155e-05 4.601e-05 5.751e-05 0.00% Amr::defBaseLevel() 1 3.5e-05 4.104e-05 5.001e-05 0.00% Castro::check_for_nan() 20 3.073e-05 3.417e-05 4.255e-05 0.00% Castro::post_timestep() 10 1.399e-05 1.84e-05 2.255e-05 0.00% Castro::post_init() 1 6.96e-06 1.154e-05 1.946e-05 0.00% Amr::InitializeInit() 1 2.901e-06 6.627e-06 1.182e-05 0.00% Castro::computeNewDt() 9 8.959e-06 9.689e-06 1.083e-05 0.00% Amr::initialInit() 1 1.826e-06 2.957e-06 7.147e-06 0.00% Amr::init() 1 2.29e-06 3.236e-06 5.28e-06 0.00% Castro::computeInitialDt() 2 4.191e-06 4.716e-06 5.169e-06 0.00% Other 199 0.01376 0.01627 0.01768 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.943 3.943 3.943 100.00% Amr::coarseTimeStep() 10 3.714 3.714 3.714 94.19% Amr::timeStep() 10 3.699 3.701 3.703 93.89% Castro::advance() 10 3.682 3.683 3.683 93.41% Castro::subcycle_advance_ctu() 10 3.569 3.573 3.578 90.75% Castro::do_advance_ctu() 10 3.569 3.573 3.578 90.74% Castro::construct_ctu_hydro_source() 10 2.642 2.647 2.654 67.30% check_for_negative_density() 10 0.009273 0.2136 0.4355 11.04% Gravity::make_radial_gravity() 21 0.3228 0.338 0.3653 9.26% AmrLevel::FillPatch() 41 0.274 0.2974 0.3169 8.04% FillPatchIterator::Initialize 41 0.2313 0.2454 0.2584 6.55% Castro::initialize_do_advance() 10 0.22 0.2406 0.2526 6.41% Gravity::get_new_grav_vector() 11 0.2309 0.2335 0.2356 5.98% Castro::construct_old_gravity() 10 0.2006 0.2102 0.232 5.88% Gravity::get_old_grav_vector() 10 0.1996 0.2093 0.2311 5.86% Amr::init() 1 0.2083 0.2085 0.2085 5.29% Castro::construct_new_gravity() 10 0.2031 0.206 0.208 5.27% Amr::initialInit() 1 0.1883 0.1885 0.1885 4.78% Castro::expand_state() 10 0.1455 0.1666 0.1819 4.61% FillPatchIterator::FillFromLevel0() 41 0.1635 0.17 0.1753 4.45% FillPatchSingleLevel 41 0.1634 0.1699 0.1752 4.44% Amr::InitializeInit() 1 0.0633 0.1035 0.1563 3.96% Amr::defBaseLevel() 1 0.06329 0.1035 0.1563 3.96% Castro::do_old_sources() 10 0.1425 0.1459 0.1492 3.78% Castro::clean_state() 62 0.1258 0.1345 0.1426 3.62% FabArray::ParallelCopy() 41 0.1239 0.1289 0.1349 3.42% amrex::Copy() 193 0.1018 0.1223 0.1341 3.40% Castro::initData() 1 0.04225 0.07995 0.1308 3.32% Amr::FinalizeInit() 1 0.03193 0.08498 0.1252 3.18% Castro::estTimeStep() 21 0.03673 0.08115 0.117 2.97% FabArray::setVal() 143 0.09853 0.1045 0.109 2.76% Castro::initialize_advance() 10 0.09943 0.1052 0.1088 2.76% Castro::computeInitialDt() 2 0.002723 0.0556 0.0958 2.43% Castro::do_new_sources() 10 0.07608 0.08309 0.08902 2.26% Castro::computeTemp() 63 0.06947 0.07285 0.0765 1.94% FabArray::ParallelCopy_finish() 41 0.05686 0.06178 0.07554 1.92% FabArray::ParallelCopy_nowait() 41 0.05923 0.06699 0.07168 1.82% Castro::normalize_species() 62 0.04746 0.05481 0.06043 1.53% Castro::reset_internal_energy(MultiFab) 63 0.04978 0.05198 0.05454 1.38% Castro::reset_internal_energy(Fab) 1008 0.04944 0.05164 0.0542 1.37% StateDataPhysBCFunct::() 41 0.03508 0.0409 0.0476 1.21% StateData::FillBoundary(geom) 41 0.03495 0.04077 0.04747 1.20% Castro::construct_new_source() 50 0.03816 0.04165 0.0461 1.17% Castro::construct_new_gravity_source() 10 0.03027 0.03266 0.03647 0.92% Amr::writePlotFile() 2 0.03275 0.03287 0.03302 0.84% Castro::post_init() 1 0.02831 0.02873 0.02902 0.74% Gravity::interpolate_monopole_grav() 21 0.02724 0.0277 0.02836 0.72% Castro::finalize_do_advance() 10 0.0112 0.018 0.02644 0.67% Castro::apply_source_to_state() 20 0.01859 0.0206 0.0222 0.56% FabArray::Saxpy() 20 0.01853 0.02052 0.02212 0.56% FabArray::setDomainBndry() 41 0.01691 0.01925 0.02123 0.54% Castro::post_timestep() 10 0.01602 0.01765 0.01906 0.48% Castro::construct_old_source() 50 0.01658 0.01754 0.01848 0.47% Castro::construct_old_gravity_source() 10 0.01645 0.01743 0.01835 0.47% Castro::Castro() 1 0.01379 0.0159 0.01773 0.45% VisMF::Write(FabArray) 2 0.01234 0.01354 0.01701 0.43% Castro::check_for_nan() 20 0.01346 0.01548 0.01695 0.43% MultiFab::contains_nan() 20 0.01343 0.01545 0.01692 0.43% Castro::initMFs() 1 0.008404 0.009711 0.01116 0.28% Castro::computeNewDt() 9 0.008807 0.008832 0.008848 0.22% Castro::enforce_min_density() 62 0.006735 0.007485 0.008295 0.21% Other 199 0.02664 0.03055 0.03316 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 34 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8664 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6747 KiB 6751 KiB 6752 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4522 KiB 4526 KiB 4530 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 259 KiB 287 KiB 308 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 21 KiB 22 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 208 KiB 218 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 50 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 68 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-4-g81cc845dc1ad) finalized