Initializing AMReX (24.12-5-g2f10b41e3974)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-5-g2f10b41e3974) initialized Starting run at 06:25:31 UTC on 2024-12-04. Successfully read inputs file ... Castro git describe: 24.12-1-gc4b718145 AMReX git describe: 24.12-5-g2f10b41e3 Microphysics git describe: 24.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014142517 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337887013 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.305598788 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.303989984 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.302634069 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.386520508 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.318047786 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284629017 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.283524124 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.284527124 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.2854977 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007581116 seconds Ending run at 06:25:34 UTC on 2024-12-04. Run time = 3.285209799 Run time without initialization = 3.105447183 Average number of zones advanced per microsecond: 0.844 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2847 ... 3.2850 ... 3.2852 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0629 2.1177 2.2104 67.28% Gravity::make_radial_gravity() 21 0.2958 0.3007 0.3126 9.51% check_for_negative_density() 10 0.02539 0.1179 0.176 5.36% Castro::initData() 1 0.03924 0.07513 0.117 3.56% Castro::estTimeStep() 21 0.03337 0.07243 0.1117 3.40% FabArray::ParallelCopy_finish() 41 0.03619 0.05309 0.08862 2.70% amrex::Copy() 193 0.0635 0.07916 0.08538 2.60% FabArray::setVal() 143 0.0625 0.06765 0.0754 2.30% Castro::reset_internal_energy(Fab) 1008 0.0411 0.04455 0.04819 1.47% Castro::normalize_species() 62 0.04556 0.04641 0.04737 1.44% FabArray::ParallelCopy_nowait() 41 0.0333 0.03978 0.04208 1.28% StateData::FillBoundary(geom) 41 0.02934 0.03193 0.03461 1.05% FillPatchIterator::Initialize 41 0.02662 0.03177 0.0344 1.05% Gravity::interpolate_monopole_grav() 21 0.02725 0.02758 0.02842 0.86% Castro::construct_new_gravity_source() 10 0.02309 0.02455 0.02642 0.80% Castro::initialize_do_advance() 10 0.01193 0.01617 0.01984 0.60% Castro::computeTemp() 63 0.01705 0.01785 0.01867 0.57% Castro::initialize_advance() 10 0.005241 0.01045 0.01391 0.42% FabArray::Saxpy() 20 0.01057 0.01236 0.01309 0.40% MultiFab::contains_nan() 20 0.01017 0.01125 0.0129 0.39% Amr::writePlotFile() 2 0.007379 0.009948 0.01202 0.37% VisMF::Write(FabArray) 2 0.008695 0.009556 0.01186 0.36% FabArray::setDomainBndry() 41 0.007019 0.009816 0.01135 0.35% Castro::construct_old_gravity_source() 10 0.00661 0.009197 0.009773 0.30% Castro::initMFs() 1 0.006366 0.007271 0.008231 0.25% Castro::construct_new_source() 50 0.005446 0.006064 0.006247 0.19% main() 1 0.004069 0.004357 0.004588 0.14% Amr::coarseTimeStep() 10 0.002056 0.002728 0.003667 0.11% Gravity::get_new_grav_vector() 11 0.003082 0.003358 0.003566 0.11% Gravity::get_old_grav_vector() 10 0.001616 0.00209 0.002546 0.08% Castro::finalize_do_advance() 10 0.0004805 0.001087 0.001203 0.04% AmrLevel::FillPatch() 41 0.0007286 0.001037 0.001163 0.04% Amr::timeStep() 10 0.0001458 0.0002176 0.0004278 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002807 0.000293 0.0003119 0.01% Castro::do_advance_ctu() 10 0.0001147 0.0001547 0.0001751 0.01% Castro::clean_state() 62 0.0001356 0.0001505 0.0001702 0.01% StateDataPhysBCFunct::() 41 8.379e-05 9.225e-05 0.0001015 0.00% Castro::do_old_sources() 10 5.8e-05 8.59e-05 9.961e-05 0.00% FillPatchIterator::FillFromLevel0() 41 7.985e-05 9.361e-05 9.92e-05 0.00% FabArray::ParallelCopy() 41 7.226e-05 8.659e-05 9.916e-05 0.00% Castro::construct_old_source() 50 4.319e-05 6.829e-05 8.315e-05 0.00% Castro::Castro() 1 5.665e-05 7.106e-05 7.994e-05 0.00% Amr::FinalizeInit() 1 3.656e-06 1.29e-05 7.371e-05 0.00% Castro::do_new_sources() 10 4.645e-05 6.01e-05 6.719e-05 0.00% Castro::subcycle_advance_ctu() 10 3.492e-05 5.072e-05 6.546e-05 0.00% FillPatchSingleLevel 41 5.175e-05 5.9e-05 6.279e-05 0.00% Castro::apply_source_to_state() 20 2.975e-05 4.719e-05 5.663e-05 0.00% Castro::construct_old_gravity() 10 3.294e-05 3.917e-05 4.953e-05 0.00% Castro::advance() 10 3.135e-05 4.334e-05 4.856e-05 0.00% Castro::construct_new_gravity() 10 3.177e-05 3.574e-05 4.695e-05 0.00% Amr::defBaseLevel() 1 2.863e-05 3.62e-05 4.164e-05 0.00% Castro::check_for_nan() 20 2.481e-05 2.76e-05 3.452e-05 0.00% Castro::expand_state() 10 1.951e-05 2.389e-05 2.892e-05 0.00% Castro::post_timestep() 10 1.317e-05 1.604e-05 1.901e-05 0.00% Castro::computeNewDt() 9 8.698e-06 1.001e-05 1.26e-05 0.00% Castro::post_init() 1 8.097e-06 9.374e-06 1.069e-05 0.00% Amr::InitializeInit() 1 2.888e-06 4.011e-06 6.271e-06 0.00% Castro::computeInitialDt() 2 3.308e-06 3.547e-06 3.857e-06 0.00% Amr::init() 1 1.78e-06 2.312e-06 3.019e-06 0.00% Amr::initialInit() 1 1.431e-06 1.843e-06 2.453e-06 0.00% Other 261 0.01582 0.01837 0.02016 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.285 3.285 3.285 100.00% Amr::coarseTimeStep() 10 3.093 3.093 3.093 94.16% Amr::timeStep() 10 3.08 3.081 3.081 93.79% Castro::advance() 10 3.064 3.065 3.065 93.31% Castro::subcycle_advance_ctu() 10 2.984 2.992 3.001 91.34% Castro::do_advance_ctu() 10 2.984 2.992 3.001 91.34% Castro::construct_ctu_hydro_source() 10 2.254 2.257 2.261 68.81% Gravity::make_radial_gravity() 21 0.3132 0.3173 0.3255 9.91% Gravity::get_new_grav_vector() 11 0.2103 0.2127 0.2148 6.54% AmrLevel::FillPatch() 41 0.1844 0.199 0.2099 6.39% Castro::construct_old_gravity() 10 0.1832 0.186 0.1932 5.88% Gravity::get_old_grav_vector() 10 0.1825 0.1853 0.1925 5.86% Castro::construct_new_gravity() 10 0.1888 0.1906 0.1923 5.85% FillPatchIterator::Initialize 41 0.1523 0.1668 0.1853 5.64% Amr::init() 1 0.1792 0.1794 0.1794 5.46% check_for_negative_density() 10 0.02539 0.1179 0.176 5.36% Castro::initialize_do_advance() 10 0.1608 0.1669 0.1711 5.21% Amr::initialInit() 1 0.1645 0.1649 0.1651 5.02% FillPatchIterator::FillFromLevel0() 41 0.1082 0.1252 0.1517 4.62% FillPatchSingleLevel 41 0.1081 0.1251 0.1516 4.61% Amr::InitializeInit() 1 0.06064 0.09631 0.139 4.23% Amr::defBaseLevel() 1 0.06063 0.0963 0.139 4.23% FabArray::ParallelCopy() 41 0.07619 0.09304 0.1221 3.72% Castro::initData() 1 0.04292 0.07886 0.1211 3.69% Castro::expand_state() 10 0.1058 0.1146 0.1204 3.66% Castro::clean_state() 62 0.1091 0.1143 0.1188 3.62% Castro::estTimeStep() 21 0.03337 0.07243 0.1117 3.40% Amr::FinalizeInit() 1 0.02548 0.06863 0.1043 3.17% Castro::do_old_sources() 10 0.08797 0.09142 0.09472 2.88% FabArray::ParallelCopy_finish() 41 0.03619 0.05309 0.08862 2.70% amrex::Copy() 193 0.0635 0.07916 0.08538 2.60% Castro::computeInitialDt() 2 0.002169 0.04489 0.08041 2.45% Castro::initialize_advance() 10 0.05985 0.06901 0.0769 2.34% FabArray::setVal() 143 0.0625 0.06765 0.0754 2.30% Castro::do_new_sources() 10 0.06069 0.06465 0.07078 2.15% Castro::computeTemp() 63 0.0585 0.06269 0.06714 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04138 0.04484 0.04847 1.48% Castro::reset_internal_energy(Fab) 1008 0.0411 0.04455 0.04819 1.47% Castro::normalize_species() 62 0.04556 0.04641 0.04737 1.44% FabArray::ParallelCopy_nowait() 41 0.03338 0.03987 0.04216 1.28% StateDataPhysBCFunct::() 41 0.02944 0.03202 0.0347 1.06% StateData::FillBoundary(geom) 41 0.02934 0.03193 0.03461 1.05% Castro::construct_new_source() 50 0.02892 0.03061 0.03254 0.99% Gravity::interpolate_monopole_grav() 21 0.02725 0.02758 0.02842 0.86% Castro::construct_new_gravity_source() 10 0.02309 0.02455 0.02642 0.80% Castro::finalize_do_advance() 10 0.01387 0.01978 0.02359 0.72% Castro::post_init() 1 0.02297 0.02333 0.02347 0.71% Amr::writePlotFile() 2 0.02196 0.0221 0.02253 0.69% Castro::post_timestep() 10 0.01505 0.01575 0.0165 0.50% Castro::apply_source_to_state() 20 0.0106 0.0124 0.01314 0.40% FabArray::Saxpy() 20 0.01057 0.01236 0.01309 0.40% Castro::check_for_nan() 20 0.0102 0.01128 0.01294 0.39% MultiFab::contains_nan() 20 0.01017 0.01125 0.0129 0.39% Castro::Castro() 1 0.00917 0.0111 0.0122 0.37% VisMF::Write(FabArray) 2 0.008695 0.009556 0.01186 0.36% FabArray::setDomainBndry() 41 0.007019 0.009816 0.01135 0.35% Castro::construct_old_source() 50 0.006653 0.009265 0.009852 0.30% Castro::construct_old_gravity_source() 10 0.00661 0.009197 0.009773 0.30% Castro::computeNewDt() 9 0.008845 0.00886 0.008874 0.27% Castro::initMFs() 1 0.006366 0.007271 0.008231 0.25% Other 261 0.02592 0.02972 0.0328 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6738 KiB 6745 KiB 6749 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4538 KiB 4550 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 231 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 243 KiB 246 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 44 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-5-g2f10b41e3974) finalized