Initializing AMReX (24.12-5-g2f10b41e3974)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-5-g2f10b41e3974) initialized Starting run at 06:20:52 UTC on 2024-12-05. Successfully read inputs file ... Castro git describe: 24.12-1-gc4b718145 AMReX git describe: 24.12-5-g2f10b41e3 Microphysics git describe: 24.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016127318 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.3391438 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.321878089 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.310202418 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314788945 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357567098 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.338441275 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.33885998 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.316904407 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315508622 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.315625343 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010117715 seconds Ending run at 06:20:56 UTC on 2024-12-05. Run time = 3.457136422 Run time without initialization = 3.285727823 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4557 ... 3.4568 ... 3.4572 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0710 2.1880 2.3183 67.06% Gravity::make_radial_gravity() 21 0.295 0.3094 0.336 9.72% check_for_negative_density() 10 0.03428 0.1716 0.2965 8.58% FabArray::ParallelCopy_finish() 41 0.04093 0.0558 0.1079 3.12% Castro::initData() 1 0.03696 0.07474 0.1048 3.03% Castro::estTimeStep() 21 0.02543 0.06187 0.09606 2.78% amrex::Copy() 193 0.06095 0.08549 0.09423 2.73% FabArray::setVal() 143 0.06146 0.07477 0.08349 2.41% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04835 0.05074 1.47% Castro::normalize_species() 62 0.04647 0.04841 0.04976 1.44% FabArray::ParallelCopy_nowait() 41 0.03406 0.04376 0.04788 1.38% FillPatchIterator::Initialize 41 0.0264 0.03599 0.04016 1.16% StateData::FillBoundary(geom) 41 0.02977 0.03456 0.03934 1.14% Castro::construct_new_gravity_source() 10 0.02439 0.02619 0.02926 0.85% Gravity::interpolate_monopole_grav() 21 0.02747 0.02781 0.02832 0.82% Castro::computeTemp() 63 0.01825 0.01943 0.02064 0.60% Castro::initialize_do_advance() 10 0.01183 0.01816 0.02061 0.60% FabArray::Saxpy() 20 0.01188 0.01413 0.01579 0.46% VisMF::Write(FabArray) 2 0.009201 0.01046 0.01516 0.44% MultiFab::contains_nan() 20 0.01096 0.01262 0.01449 0.42% FabArray::setDomainBndry() 41 0.006824 0.01145 0.0143 0.41% Castro::initialize_advance() 10 0.005251 0.01125 0.01334 0.39% Amr::writePlotFile() 2 0.00884 0.01201 0.01327 0.38% Castro::construct_old_gravity_source() 10 0.006874 0.01009 0.01161 0.34% Castro::initMFs() 1 0.006379 0.006999 0.007878 0.23% Castro::enforce_min_density() 62 0.006017 0.006333 0.00708 0.20% Castro::construct_new_source() 50 0.005752 0.006632 0.006991 0.20% main() 1 0.0047 0.005721 0.006136 0.18% Gravity::get_new_grav_vector() 11 0.002628 0.003703 0.004395 0.13% Gravity::get_old_grav_vector() 10 0.001596 0.0023 0.002988 0.09% Amr::coarseTimeStep() 10 0.001774 0.00248 0.002875 0.08% Castro::finalize_do_advance() 10 0.000655 0.001026 0.001165 0.03% AmrLevel::FillPatch() 41 0.0008231 0.0009275 0.001023 0.03% Amr::timeStep() 10 0.0001732 0.0002459 0.0003737 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002904 0.0003212 0.000364 0.01% Castro::do_advance_ctu() 10 0.0001545 0.0001764 0.0002211 0.01% Castro::clean_state() 62 0.0001527 0.0001717 0.0002026 0.01% FillPatchIterator::FillFromLevel0() 41 8.963e-05 0.0001153 0.0001506 0.00% FabArray::ParallelCopy() 41 8.48e-05 0.0001042 0.0001279 0.00% Castro::do_old_sources() 10 9.006e-05 0.0001039 0.0001239 0.00% StateDataPhysBCFunct::() 41 8.633e-05 0.0001019 0.0001164 0.00% Castro::construct_old_source() 50 6.35e-05 7.981e-05 9.482e-05 0.00% Castro::do_new_sources() 10 6.173e-05 7.153e-05 9.275e-05 0.00% Castro::Castro() 1 5.205e-05 6.985e-05 8.889e-05 0.00% Amr::FinalizeInit() 1 3.54e-06 1.485e-05 8.734e-05 0.00% FillPatchSingleLevel 41 5.963e-05 7.05e-05 8.018e-05 0.00% Castro::apply_source_to_state() 20 4.054e-05 5.412e-05 6.643e-05 0.00% Castro::subcycle_advance_ctu() 10 4.865e-05 5.631e-05 6.507e-05 0.00% Castro::advance() 10 4.483e-05 5.082e-05 6.336e-05 0.00% Castro::construct_old_gravity() 10 3.618e-05 4.351e-05 5.485e-05 0.00% Amr::defBaseLevel() 1 3.141e-05 3.78e-05 4.697e-05 0.00% Castro::construct_new_gravity() 10 3.029e-05 3.769e-05 4.609e-05 0.00% Castro::expand_state() 10 2.698e-05 3.16e-05 3.659e-05 0.00% Castro::check_for_nan() 20 2.669e-05 3.007e-05 3.372e-05 0.00% Castro::post_timestep() 10 1.569e-05 1.779e-05 2.032e-05 0.00% Castro::computeNewDt() 9 9.343e-06 1.067e-05 1.269e-05 0.00% Castro::post_init() 1 8.082e-06 9.386e-06 1.117e-05 0.00% Amr::InitializeInit() 1 2.524e-06 3.47e-06 6.926e-06 0.00% Castro::computeInitialDt() 2 3.636e-06 4.252e-06 5.151e-06 0.00% Amr::init() 1 1.819e-06 2.243e-06 2.795e-06 0.00% Amr::initialInit() 1 1.167e-06 1.43e-06 2.098e-06 0.00% Other 199 0.009256 0.01225 0.01422 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.456 3.457 3.457 100.00% Amr::coarseTimeStep() 10 3.27 3.27 3.27 94.57% Amr::timeStep() 10 3.256 3.256 3.257 94.21% Castro::advance() 10 3.239 3.24 3.24 93.72% Castro::subcycle_advance_ctu() 10 3.151 3.158 3.176 91.86% Castro::do_advance_ctu() 10 3.151 3.158 3.176 91.85% Castro::construct_ctu_hydro_source() 10 2.375 2.382 2.389 69.09% Gravity::make_radial_gravity() 21 0.3124 0.3269 0.348 10.07% check_for_negative_density() 10 0.03428 0.1716 0.2965 8.58% AmrLevel::FillPatch() 41 0.2016 0.2166 0.2319 6.71% Gravity::get_new_grav_vector() 11 0.2143 0.2171 0.2195 6.35% Castro::construct_old_gravity() 10 0.1867 0.1969 0.2129 6.16% Gravity::get_old_grav_vector() 10 0.186 0.1962 0.2122 6.14% FillPatchIterator::Initialize 41 0.1713 0.182 0.2084 6.03% Castro::construct_new_gravity() 10 0.1894 0.1914 0.1936 5.60% Castro::initialize_do_advance() 10 0.1679 0.1767 0.1829 5.29% FillPatchIterator::FillFromLevel0() 41 0.1203 0.1346 0.1723 4.99% FillPatchSingleLevel 41 0.1202 0.1345 0.1722 4.98% Amr::init() 1 0.1708 0.171 0.1711 4.95% Amr::initialInit() 1 0.1545 0.1553 0.1559 4.51% FabArray::ParallelCopy() 41 0.08705 0.09976 0.1422 4.11% Castro::expand_state() 10 0.1123 0.1197 0.1299 3.76% Castro::clean_state() 62 0.1171 0.1221 0.1269 3.67% Amr::InitializeInit() 1 0.05678 0.09553 0.1256 3.63% Amr::defBaseLevel() 1 0.05678 0.09553 0.1256 3.63% Castro::initData() 1 0.04092 0.07872 0.1088 3.15% FabArray::ParallelCopy_finish() 41 0.04093 0.0558 0.1079 3.12% Castro::do_old_sources() 10 0.09949 0.1049 0.1076 3.11% Amr::FinalizeInit() 1 0.03024 0.05976 0.09901 2.86% Castro::estTimeStep() 21 0.02543 0.06187 0.09606 2.78% amrex::Copy() 193 0.06095 0.08549 0.09423 2.73% Castro::initialize_advance() 10 0.05931 0.07725 0.08408 2.43% FabArray::setVal() 143 0.06146 0.07477 0.08349 2.41% Castro::do_new_sources() 10 0.06321 0.06844 0.07443 2.15% Castro::computeTemp() 63 0.06339 0.0681 0.07162 2.07% Castro::computeInitialDt() 2 0.002537 0.03252 0.07132 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04514 0.04867 0.0511 1.48% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04835 0.05074 1.47% Castro::normalize_species() 62 0.04647 0.04841 0.04976 1.44% FabArray::ParallelCopy_nowait() 41 0.03418 0.04386 0.04797 1.39% StateDataPhysBCFunct::() 41 0.02987 0.03466 0.03944 1.14% StateData::FillBoundary(geom) 41 0.02977 0.03456 0.03934 1.14% Castro::construct_new_source() 50 0.03015 0.03282 0.03571 1.03% Castro::construct_new_gravity_source() 10 0.02439 0.02619 0.02926 0.85% Gravity::interpolate_monopole_grav() 21 0.02747 0.02781 0.02832 0.82% Castro::post_init() 1 0.02626 0.02695 0.0275 0.80% Castro::finalize_do_advance() 10 0.01486 0.02125 0.02732 0.79% Amr::writePlotFile() 2 0.02536 0.02594 0.02654 0.77% Castro::post_timestep() 10 0.01603 0.01655 0.01707 0.49% Castro::apply_source_to_state() 20 0.01194 0.01418 0.01584 0.46% FabArray::Saxpy() 20 0.01188 0.01413 0.01579 0.46% VisMF::Write(FabArray) 2 0.009201 0.01046 0.01516 0.44% Castro::check_for_nan() 20 0.011 0.01265 0.01452 0.42% MultiFab::contains_nan() 20 0.01096 0.01262 0.01449 0.42% FabArray::setDomainBndry() 41 0.006824 0.01145 0.0143 0.41% Castro::construct_old_source() 50 0.006945 0.01017 0.0117 0.34% Castro::construct_old_gravity_source() 10 0.006874 0.01009 0.01161 0.34% Castro::Castro() 1 0.01004 0.01075 0.01159 0.34% Castro::computeNewDt() 9 0.009114 0.009136 0.009157 0.26% Castro::initMFs() 1 0.006379 0.006999 0.007878 0.23% Castro::enforce_min_density() 62 0.006017 0.006333 0.00708 0.20% Other 199 0.02016 0.02423 0.02767 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6776 KiB 6780 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4564 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 236 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 241 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-5-g2f10b41e3974) finalized