Initializing AMReX (24.12-6-g6aa80dfba6df)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-6-g6aa80dfba6df) initialized Starting run at 06:19:44 UTC on 2024-12-06. Successfully read inputs file ... Castro git describe: 24.12-1-gc4b718145 AMReX git describe: 24.12-6-g6aa80dfba Microphysics git describe: 24.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013939656 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.330238331 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.320526542 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.306868848 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.302551829 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35729472 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307368622 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.346479105 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.309955814 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310228821 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303234248 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010376669 seconds Ending run at 06:19:47 UTC on 2024-12-06. Run time = 3.39708512 Run time without initialization = 3.211873008 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3961 ... 3.3967 ... 3.3972 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0612 2.1442 2.2202 65.35% Gravity::make_radial_gravity() 21 0.3062 0.3193 0.3374 9.93% check_for_negative_density() 10 0.05851 0.1362 0.2208 6.50% Castro::initData() 1 0.03751 0.0732 0.1224 3.60% Castro::estTimeStep() 21 0.02378 0.07967 0.1196 3.52% FabArray::ParallelCopy_finish() 41 0.04059 0.05721 0.1195 3.52% amrex::Copy() 193 0.06008 0.08286 0.09142 2.69% FabArray::setVal() 143 0.0559 0.07917 0.08699 2.56% Castro::normalize_species() 62 0.04567 0.0484 0.05231 1.54% Castro::reset_internal_energy(Fab) 1008 0.04476 0.04768 0.05135 1.51% FabArray::ParallelCopy_nowait() 41 0.0364 0.04255 0.04438 1.31% FillPatchIterator::Initialize 41 0.0251 0.03277 0.03784 1.11% StateData::FillBoundary(geom) 41 0.03081 0.03364 0.03692 1.09% Gravity::interpolate_monopole_grav() 21 0.02697 0.02747 0.02817 0.83% Castro::construct_new_gravity_source() 10 0.02422 0.02593 0.02783 0.82% Castro::initialize_do_advance() 10 0.00998 0.01798 0.02073 0.61% Castro::computeTemp() 63 0.01788 0.01905 0.02007 0.59% Castro::initialize_advance() 10 0.004225 0.01315 0.01491 0.44% FabArray::Saxpy() 20 0.01176 0.01362 0.0146 0.43% Amr::writePlotFile() 2 0.008027 0.01126 0.01413 0.42% MultiFab::contains_nan() 20 0.01122 0.01262 0.01402 0.41% VisMF::Write(FabArray) 2 0.008893 0.009784 0.01259 0.37% FabArray::setDomainBndry() 41 0.006743 0.009794 0.01146 0.34% Castro::construct_old_gravity_source() 10 0.007081 0.01011 0.01118 0.33% Castro::initMFs() 1 0.006283 0.006671 0.008129 0.24% Castro::construct_new_source() 50 0.005894 0.006603 0.007047 0.21% main() 1 0.005335 0.005928 0.006384 0.19% Gravity::get_new_grav_vector() 11 0.002783 0.003462 0.004048 0.12% Amr::coarseTimeStep() 10 0.001317 0.00241 0.003465 0.10% Gravity::get_old_grav_vector() 10 0.001514 0.002206 0.002743 0.08% Castro::finalize_do_advance() 10 0.0004791 0.0009533 0.001131 0.03% AmrLevel::FillPatch() 41 0.000831 0.0008637 0.000924 0.03% Amr::timeStep() 10 0.0001467 0.0002496 0.0004439 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000286 0.0003123 0.0003478 0.01% Castro::do_advance_ctu() 10 0.0001497 0.0001795 0.0002097 0.01% Castro::clean_state() 62 0.0001618 0.0001695 0.0001936 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001028 0.0001116 0.0001248 0.00% StateDataPhysBCFunct::() 41 9.307e-05 0.000106 0.0001226 0.00% FabArray::ParallelCopy() 41 8.926e-05 0.0001024 0.0001172 0.00% Castro::Castro() 1 5.533e-05 7.468e-05 0.0001108 0.00% Castro::do_old_sources() 10 8.89e-05 0.0001017 0.0001098 0.00% Castro::construct_old_source() 50 6.437e-05 7.421e-05 8.667e-05 0.00% Castro::do_new_sources() 10 5.962e-05 6.792e-05 8.004e-05 0.00% FillPatchSingleLevel 41 6.186e-05 6.928e-05 7.68e-05 0.00% Amr::FinalizeInit() 1 3.747e-06 1.281e-05 7.051e-05 0.00% Castro::advance() 10 4.003e-05 5.275e-05 6.147e-05 0.00% Castro::subcycle_advance_ctu() 10 5.256e-05 5.7e-05 6.072e-05 0.00% Castro::apply_source_to_state() 20 4.381e-05 4.931e-05 5.686e-05 0.00% Castro::construct_new_gravity() 10 3.405e-05 4.031e-05 5.409e-05 0.00% Castro::construct_old_gravity() 10 3.938e-05 4.347e-05 5.403e-05 0.00% Amr::defBaseLevel() 1 2.574e-05 4.095e-05 5.132e-05 0.00% Castro::expand_state() 10 2.474e-05 3.19e-05 3.839e-05 0.00% Castro::check_for_nan() 20 2.758e-05 2.993e-05 3.352e-05 0.00% Castro::post_timestep() 10 1.338e-05 1.826e-05 2.134e-05 0.00% Castro::post_init() 1 7.77e-06 1.003e-05 1.439e-05 0.00% Castro::computeNewDt() 9 8.581e-06 9.762e-06 1.138e-05 0.00% Amr::InitializeInit() 1 2.501e-06 3.733e-06 5.61e-06 0.00% Castro::computeInitialDt() 2 3.271e-06 3.791e-06 4.605e-06 0.00% Amr::init() 1 1.968e-06 2.486e-06 3.669e-06 0.00% Amr::initialInit() 1 1.218e-06 1.826e-06 2.414e-06 0.00% Other 261 0.01588 0.01801 0.01968 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.396 3.397 3.397 100.00% Amr::coarseTimeStep() 10 3.195 3.195 3.195 94.06% Amr::timeStep() 10 3.182 3.183 3.184 93.73% Castro::advance() 10 3.166 3.167 3.167 93.23% Castro::subcycle_advance_ctu() 10 3.074 3.081 3.111 91.56% Castro::do_advance_ctu() 10 3.073 3.081 3.11 91.56% Castro::construct_ctu_hydro_source() 10 2.3 2.303 2.307 67.91% Gravity::make_radial_gravity() 21 0.3233 0.3351 0.3497 10.29% AmrLevel::FillPatch() 41 0.2019 0.2101 0.2442 7.19% Gravity::get_new_grav_vector() 11 0.2176 0.2194 0.2211 6.51% check_for_negative_density() 10 0.05851 0.1362 0.2208 6.50% FillPatchIterator::Initialize 41 0.1679 0.1765 0.2207 6.50% Castro::construct_old_gravity() 10 0.192 0.2015 0.2139 6.30% Gravity::get_old_grav_vector() 10 0.1913 0.2008 0.2133 6.28% Castro::construct_new_gravity() 10 0.1963 0.1974 0.1986 5.85% FillPatchIterator::FillFromLevel0() 41 0.1208 0.1339 0.1889 5.56% FillPatchSingleLevel 41 0.1206 0.1338 0.1888 5.56% Castro::initialize_do_advance() 10 0.1641 0.1713 0.1887 5.55% Amr::init() 1 0.1847 0.1848 0.1849 5.44% Amr::initialInit() 1 0.1702 0.1706 0.1707 5.03% FabArray::ParallelCopy() 41 0.08517 0.09996 0.1561 4.59% Amr::InitializeInit() 1 0.05835 0.09378 0.1443 4.25% Amr::defBaseLevel() 1 0.05834 0.09378 0.1443 4.25% Castro::expand_state() 10 0.1081 0.1146 0.1411 4.15% Castro::clean_state() 62 0.1172 0.121 0.1295 3.81% Castro::initData() 1 0.04135 0.07725 0.1264 3.72% Castro::estTimeStep() 21 0.02378 0.07967 0.1196 3.52% FabArray::ParallelCopy_finish() 41 0.04059 0.05721 0.1195 3.52% Amr::FinalizeInit() 1 0.02638 0.07682 0.1123 3.30% Castro::do_old_sources() 10 0.1022 0.1039 0.1055 3.11% amrex::Copy() 193 0.06008 0.08286 0.09142 2.69% Castro::initialize_advance() 10 0.0515 0.08173 0.08897 2.62% Castro::computeInitialDt() 2 0.002373 0.05291 0.08838 2.60% FabArray::setVal() 143 0.0559 0.07917 0.08699 2.56% Castro::do_new_sources() 10 0.06265 0.06815 0.07287 2.15% Castro::computeTemp() 63 0.06293 0.06704 0.07154 2.11% Castro::normalize_species() 62 0.04567 0.0484 0.05231 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04505 0.04799 0.05169 1.52% Castro::reset_internal_energy(Fab) 1008 0.04476 0.04768 0.05135 1.51% FabArray::ParallelCopy_nowait() 41 0.03651 0.04265 0.04447 1.31% StateDataPhysBCFunct::() 41 0.03091 0.03374 0.03702 1.09% StateData::FillBoundary(geom) 41 0.03081 0.03364 0.03692 1.09% Castro::construct_new_source() 50 0.03021 0.03253 0.03483 1.03% Gravity::interpolate_monopole_grav() 21 0.02697 0.02747 0.02817 0.83% Castro::construct_new_gravity_source() 10 0.02422 0.02593 0.02783 0.82% Amr::writePlotFile() 2 0.02454 0.02468 0.02514 0.74% Castro::finalize_do_advance() 10 0.01395 0.01913 0.02495 0.73% Castro::post_init() 1 0.0232 0.02331 0.02352 0.69% Castro::post_timestep() 10 0.01556 0.01624 0.01733 0.51% Castro::apply_source_to_state() 20 0.01181 0.01367 0.01465 0.43% FabArray::Saxpy() 20 0.01176 0.01362 0.0146 0.43% Castro::check_for_nan() 20 0.01125 0.01265 0.01405 0.41% MultiFab::contains_nan() 20 0.01122 0.01262 0.01402 0.41% VisMF::Write(FabArray) 2 0.008893 0.009784 0.01259 0.37% Castro::Castro() 1 0.01012 0.01074 0.01172 0.35% FabArray::setDomainBndry() 41 0.006743 0.009794 0.01146 0.34% Castro::construct_old_source() 50 0.007148 0.01018 0.01127 0.33% Castro::construct_old_gravity_source() 10 0.007081 0.01011 0.01118 0.33% Castro::computeNewDt() 9 0.0086 0.008604 0.008609 0.25% Castro::initMFs() 1 0.006283 0.006671 0.008129 0.24% Other 261 0.02619 0.02952 0.03232 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8667 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6738 KiB 6744 KiB 6748 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4517 KiB 4530 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 231 KiB 277 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2795 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 242 KiB 251 KiB 262 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 74 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 75 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-6-g6aa80dfba6df) finalized