Initializing AMReX (24.12-7-g96db0a665ff1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-7-g96db0a665ff1) initialized Starting run at 06:20:48 UTC on 2024-12-09. Successfully read inputs file ... Castro git describe: 24.12-2-g5d9a59a2a AMReX git describe: 24.12-7-g96db0a665 Microphysics git describe: 24.12-1-gb5a9fec1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020935283 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.40397509 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.366140948 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.348469309 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.363923167 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.341350712 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.338567184 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.336662368 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.336601367 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.334640174 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.341382062 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01157678 seconds Ending run at 06:20:52 UTC on 2024-12-09. Run time = 3.73548676 Run time without initialization = 3.53142261 Average number of zones advanced per microsecond: 0.742 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.7346 ... 3.7352 ... 3.7356 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1571 2.3023 2.4688 66.09% check_for_negative_density() 10 0.004779 0.174 0.3248 8.69% Gravity::make_radial_gravity() 21 0.2933 0.3015 0.3087 8.26% amrex::Copy() 193 0.1101 0.124 0.1334 3.57% Castro::initData() 1 0.03751 0.07532 0.1207 3.23% Castro::estTimeStep() 21 0.02999 0.07406 0.1075 2.88% FabArray::setVal() 143 0.09603 0.1013 0.107 2.86% FabArray::ParallelCopy_finish() 41 0.04939 0.05706 0.07496 2.01% FabArray::ParallelCopy_nowait() 41 0.0553 0.0595 0.0625 1.67% FillPatchIterator::Initialize 41 0.04497 0.05178 0.05626 1.51% Castro::reset_internal_energy(Fab) 1008 0.04682 0.04934 0.05095 1.36% Castro::normalize_species() 62 0.04603 0.04738 0.04955 1.33% StateData::FillBoundary(geom) 41 0.03454 0.03744 0.0408 1.09% Castro::construct_new_gravity_source() 10 0.03015 0.03206 0.03449 0.92% Gravity::interpolate_monopole_grav() 21 0.02704 0.02773 0.02905 0.78% Castro::initialize_do_advance() 10 0.02356 0.02611 0.0286 0.77% FabArray::Saxpy() 20 0.01804 0.01977 0.0216 0.58% Castro::computeTemp() 63 0.01832 0.01935 0.02059 0.55% FabArray::setDomainBndry() 41 0.01535 0.01721 0.01889 0.51% Amr::writePlotFile() 2 0.01085 0.01475 0.01872 0.50% Castro::construct_old_gravity_source() 10 0.01506 0.01623 0.01663 0.45% Castro::initialize_advance() 10 0.01485 0.01589 0.01657 0.44% VisMF::Write(FabArray) 2 0.01046 0.01294 0.01651 0.44% MultiFab::contains_nan() 20 0.01188 0.01354 0.01535 0.41% Castro::initMFs() 1 0.008699 0.009947 0.01132 0.30% Castro::construct_new_source() 50 0.007223 0.008206 0.009191 0.25% main() 1 0.006622 0.007241 0.007625 0.20% Gravity::get_new_grav_vector() 11 0.004512 0.005579 0.006418 0.17% Gravity::get_old_grav_vector() 10 0.002819 0.003512 0.004529 0.12% Amr::coarseTimeStep() 10 0.0009189 0.001804 0.002613 0.07% Castro::finalize_do_advance() 10 0.001293 0.001378 0.001626 0.04% AmrLevel::FillPatch() 41 0.001081 0.001242 0.001394 0.04% Amr::timeStep() 10 0.0001524 0.0002261 0.0003667 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003091 0.0003227 0.0003359 0.01% Castro::clean_state() 62 0.0001748 0.0002014 0.000236 0.01% Castro::do_advance_ctu() 10 0.0001749 0.0001973 0.0002329 0.01% Castro::Castro() 1 8.037e-05 0.0001149 0.0001544 0.00% StateDataPhysBCFunct::() 41 0.000112 0.0001283 0.0001389 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001141 0.0001269 0.0001361 0.00% Castro::do_old_sources() 10 9.597e-05 0.0001175 0.0001344 0.00% FabArray::ParallelCopy() 41 0.000106 0.000117 0.0001254 0.00% Castro::construct_old_source() 50 8.057e-05 0.0001018 0.0001237 0.00% FillPatchSingleLevel 41 7.561e-05 8.673e-05 9.635e-05 0.00% Amr::FinalizeInit() 1 4.557e-06 1.588e-05 8.646e-05 0.00% Castro::do_new_sources() 10 5.984e-05 7.225e-05 8.322e-05 0.00% Castro::subcycle_advance_ctu() 10 5.629e-05 6.577e-05 8.086e-05 0.00% Castro::apply_source_to_state() 20 6.35e-05 6.873e-05 7.781e-05 0.00% Castro::advance() 10 4.125e-05 5.267e-05 6.635e-05 0.00% Castro::expand_state() 10 3.13e-05 4.83e-05 6.138e-05 0.00% Castro::construct_old_gravity() 10 3.988e-05 4.621e-05 5.467e-05 0.00% Amr::defBaseLevel() 1 3.336e-05 4.345e-05 5.265e-05 0.00% Castro::construct_new_gravity() 10 3.435e-05 3.756e-05 5.081e-05 0.00% Castro::check_for_nan() 20 2.89e-05 3.202e-05 3.633e-05 0.00% Castro::post_timestep() 10 1.377e-05 1.875e-05 2.496e-05 0.00% Castro::post_init() 1 8.763e-06 1.197e-05 1.813e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.359e-06 1.035e-05 1.295e-05 0.00% Castro::computeNewDt() 9 9.194e-06 1.018e-05 1.086e-05 0.00% Amr::InitializeInit() 1 2.649e-06 3.618e-06 6.415e-06 0.00% Castro::computeInitialDt() 2 3.61e-06 4.486e-06 5.303e-06 0.00% Amr::init() 1 1.912e-06 2.966e-06 4.308e-06 0.00% Amr::initialInit() 1 1.508e-06 2.218e-06 3.606e-06 0.00% Other 260 0.02018 0.02337 0.02576 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.735 3.735 3.736 100.00% Amr::coarseTimeStep() 10 3.512 3.512 3.512 94.02% Amr::timeStep() 10 3.5 3.5 3.501 93.73% Castro::advance() 10 3.484 3.484 3.485 93.29% Castro::subcycle_advance_ctu() 10 3.376 3.38 3.383 90.57% Castro::do_advance_ctu() 10 3.376 3.379 3.383 90.57% Castro::construct_ctu_hydro_source() 10 2.494 2.499 2.505 67.05% Gravity::make_radial_gravity() 21 0.319 0.3287 0.3357 8.99% check_for_negative_density() 10 0.004779 0.174 0.3248 8.69% AmrLevel::FillPatch() 41 0.2679 0.277 0.2838 7.60% Gravity::get_new_grav_vector() 11 0.2298 0.2314 0.2326 6.23% FillPatchIterator::Initialize 41 0.2185 0.2236 0.2287 6.12% Castro::initialize_do_advance() 10 0.216 0.219 0.2225 5.96% Castro::construct_old_gravity() 10 0.1968 0.2022 0.2076 5.56% Gravity::get_old_grav_vector() 10 0.1955 0.2012 0.2067 5.53% Castro::construct_new_gravity() 10 0.2014 0.2033 0.2047 5.48% Amr::init() 1 0.2035 0.2037 0.2037 5.45% Amr::initialInit() 1 0.1823 0.1825 0.1826 4.89% FillPatchIterator::FillFromLevel0() 41 0.1443 0.1546 0.1684 4.51% FillPatchSingleLevel 41 0.1442 0.1545 0.1682 4.50% Castro::expand_state() 10 0.1452 0.1505 0.1545 4.14% Amr::InitializeInit() 1 0.06492 0.1037 0.1504 4.03% Amr::defBaseLevel() 1 0.06492 0.1037 0.1504 4.03% Castro::do_old_sources() 10 0.1361 0.1384 0.1403 3.76% amrex::Copy() 193 0.1101 0.124 0.1334 3.57% FabArray::ParallelCopy() 41 0.1074 0.1168 0.1305 3.49% Castro::clean_state() 62 0.1196 0.1229 0.1262 3.38% Castro::initData() 1 0.04223 0.07984 0.1249 3.34% Amr::FinalizeInit() 1 0.03212 0.07877 0.1176 3.15% Castro::estTimeStep() 21 0.02999 0.07406 0.1075 2.88% FabArray::setVal() 143 0.09603 0.1013 0.107 2.86% Castro::initialize_advance() 10 0.0959 0.09992 0.1034 2.77% Castro::computeInitialDt() 2 0.002307 0.04904 0.0879 2.35% Castro::do_new_sources() 10 0.07479 0.07903 0.08269 2.21% FabArray::ParallelCopy_finish() 41 0.04939 0.05706 0.07496 2.01% Castro::computeTemp() 63 0.06546 0.06902 0.07175 1.92% FabArray::ParallelCopy_nowait() 41 0.05543 0.05962 0.06261 1.68% Castro::reset_internal_energy(MultiFab) 63 0.04714 0.04967 0.05126 1.37% Castro::reset_internal_energy(Fab) 1008 0.04682 0.04934 0.05095 1.36% Castro::normalize_species() 62 0.04603 0.04738 0.04955 1.33% Castro::construct_new_source() 50 0.03745 0.04026 0.04346 1.16% StateDataPhysBCFunct::() 41 0.03466 0.03757 0.04093 1.10% StateData::FillBoundary(geom) 41 0.03454 0.03744 0.0408 1.09% Castro::construct_new_gravity_source() 10 0.03015 0.03206 0.03449 0.92% Amr::writePlotFile() 2 0.03273 0.03282 0.03299 0.88% Castro::post_init() 1 0.02905 0.02931 0.02945 0.79% Gravity::interpolate_monopole_grav() 21 0.02704 0.02773 0.02905 0.78% Castro::finalize_do_advance() 10 0.01213 0.01755 0.02335 0.62% Castro::apply_source_to_state() 20 0.0181 0.01984 0.02168 0.58% FabArray::Saxpy() 20 0.01804 0.01977 0.0216 0.58% FabArray::setDomainBndry() 41 0.01535 0.01721 0.01889 0.51% Castro::Castro() 1 0.01417 0.01595 0.01747 0.47% Castro::construct_old_source() 50 0.01517 0.01633 0.01672 0.45% Castro::construct_old_gravity_source() 10 0.01506 0.01623 0.01663 0.45% Castro::post_timestep() 10 0.01537 0.0159 0.01656 0.44% VisMF::Write(FabArray) 2 0.01046 0.01294 0.01651 0.44% Castro::check_for_nan() 20 0.01191 0.01357 0.01538 0.41% MultiFab::contains_nan() 20 0.01188 0.01354 0.01535 0.41% Castro::initMFs() 1 0.008699 0.009947 0.01132 0.30% Castro::computeNewDt() 9 0.008829 0.008863 0.008882 0.24% AmrLevel::AmrLevel(dm) 1 0.007133 0.00766 0.008206 0.22% Other 260 0.02594 0.03007 0.03322 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8660 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6739 KiB 6742 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4516 KiB 4519 KiB 4525 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 269 KiB 278 KiB 285 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 22 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2797 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 217 KiB 224 KiB 228 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 46 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-7-g96db0a665ff1) finalized