Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 06:38:55 UTC on 2024-12-10. Successfully read inputs file ... Castro git describe: 24.12-2-g5d9a59a2a AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-1-gb5a9fec1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014943533 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336138845 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328514286 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.311503134 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309267311 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355826303 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300163759 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.287473115 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.290169429 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.290473153 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.289105498 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009072253 seconds Ending run at 06:38:58 UTC on 2024-12-10. Run time = 3.295536388 Run time without initialization = 3.113359493 Average number of zones advanced per microsecond: 0.842 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2943 ... 3.2948 ... 3.2956 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0210 2.1060 2.2000 66.76% Gravity::make_radial_gravity() 21 0.2863 0.2936 0.3068 9.31% check_for_negative_density() 10 0.03707 0.1345 0.2217 6.73% Castro::initData() 1 0.03887 0.07406 0.1179 3.58% Castro::estTimeStep() 21 0.02411 0.07319 0.1104 3.35% amrex::Copy() 193 0.07429 0.08145 0.08983 2.73% FabArray::setVal() 143 0.06533 0.07081 0.07659 2.32% FabArray::ParallelCopy_finish() 41 0.03768 0.04635 0.05742 1.74% Castro::normalize_species() 62 0.04512 0.04585 0.04691 1.42% Castro::reset_internal_energy(Fab) 1008 0.0404 0.04514 0.04688 1.42% FabArray::ParallelCopy_nowait() 41 0.03864 0.04173 0.04368 1.33% StateData::FillBoundary(geom) 41 0.02945 0.03292 0.03832 1.16% FillPatchIterator::Initialize 41 0.02787 0.03366 0.03608 1.09% Gravity::interpolate_monopole_grav() 21 0.02668 0.02727 0.02831 0.86% Castro::construct_new_gravity_source() 10 0.02381 0.02514 0.02717 0.82% Castro::computeTemp() 63 0.01642 0.01817 0.01987 0.60% Castro::initialize_do_advance() 10 0.01377 0.01725 0.01923 0.58% Castro::initialize_advance() 10 0.01043 0.01252 0.01481 0.45% FabArray::Saxpy() 20 0.01217 0.01323 0.01448 0.44% VisMF::Write(FabArray) 2 0.009426 0.009939 0.01245 0.38% MultiFab::contains_nan() 20 0.01078 0.0116 0.01238 0.38% Amr::writePlotFile() 2 0.008826 0.01142 0.01214 0.37% FabArray::setDomainBndry() 41 0.007271 0.01043 0.01172 0.36% Castro::construct_old_gravity_source() 10 0.008592 0.01024 0.01066 0.32% Castro::initMFs() 1 0.006436 0.007303 0.008421 0.26% Castro::construct_new_source() 50 0.00594 0.006107 0.006321 0.19% main() 1 0.00384 0.004347 0.005161 0.16% Amr::coarseTimeStep() 10 0.001515 0.002497 0.003865 0.12% Gravity::get_new_grav_vector() 11 0.002978 0.003544 0.003854 0.12% Gravity::get_old_grav_vector() 10 0.001623 0.002106 0.002577 0.08% Castro::finalize_do_advance() 10 0.0005685 0.001125 0.001232 0.04% AmrLevel::FillPatch() 41 0.0008297 0.001106 0.001189 0.04% Amr::timeStep() 10 0.0001613 0.0002104 0.000357 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002974 0.000323 0.01% Castro::do_advance_ctu() 10 0.0001426 0.0001643 0.0001868 0.01% Castro::clean_state() 62 0.0001361 0.0001559 0.0001691 0.01% FillPatchIterator::FillFromLevel0() 41 9.621e-05 0.0001022 0.0001105 0.00% Castro::do_old_sources() 10 7.626e-05 9.391e-05 0.0001087 0.00% FabArray::ParallelCopy() 41 8.401e-05 9.53e-05 0.0001074 0.00% StateDataPhysBCFunct::() 41 9.405e-05 0.0001013 0.0001066 0.00% Amr::FinalizeInit() 1 4.195e-06 1.587e-05 9.541e-05 0.00% Castro::Castro() 1 5.487e-05 6.957e-05 9.35e-05 0.00% Castro::construct_old_source() 50 6.495e-05 7.525e-05 8.028e-05 0.00% FillPatchSingleLevel 41 5.967e-05 6.557e-05 7.149e-05 0.00% Castro::do_new_sources() 10 6.064e-05 6.626e-05 7.109e-05 0.00% Castro::subcycle_advance_ctu() 10 4.413e-05 5.151e-05 6.137e-05 0.00% Castro::construct_new_gravity() 10 3.406e-05 4.142e-05 5.931e-05 0.00% Amr::defBaseLevel() 1 2.652e-05 4.249e-05 5.851e-05 0.00% Castro::advance() 10 3.96e-05 4.555e-05 5.736e-05 0.00% Castro::apply_source_to_state() 20 4.086e-05 4.726e-05 5.526e-05 0.00% Castro::construct_old_gravity() 10 3.135e-05 3.97e-05 4.68e-05 0.00% Castro::expand_state() 10 2.19e-05 2.712e-05 3.22e-05 0.00% Castro::check_for_nan() 20 2.401e-05 2.781e-05 3.173e-05 0.00% Castro::post_timestep() 10 1.284e-05 1.594e-05 1.935e-05 0.00% Castro::post_init() 1 8.347e-06 9.926e-06 1.707e-05 0.00% Castro::computeNewDt() 9 8.646e-06 9.694e-06 1.101e-05 0.00% Amr::initialInit() 1 1.341e-06 2.397e-06 7.234e-06 0.00% Amr::InitializeInit() 1 2.733e-06 3.42e-06 5.228e-06 0.00% Castro::computeInitialDt() 2 3.346e-06 3.683e-06 4.226e-06 0.00% Amr::init() 1 1.948e-06 2.469e-06 2.85e-06 0.00% Other 261 0.01611 0.01837 0.01987 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.294 3.295 3.296 100.00% Amr::coarseTimeStep() 10 3.099 3.099 3.099 94.04% Amr::timeStep() 10 3.085 3.087 3.088 93.69% Castro::advance() 10 3.07 3.071 3.071 93.19% Castro::subcycle_advance_ctu() 10 2.991 2.994 2.998 90.97% Castro::do_advance_ctu() 10 2.99 2.994 2.998 90.96% Castro::construct_ctu_hydro_source() 10 2.258 2.262 2.265 68.73% Gravity::make_radial_gravity() 21 0.3034 0.3101 0.3219 9.77% check_for_negative_density() 10 0.03707 0.1345 0.2217 6.73% AmrLevel::FillPatch() 41 0.1874 0.1993 0.2105 6.39% Gravity::get_new_grav_vector() 11 0.2078 0.209 0.2104 6.39% Castro::construct_old_gravity() 10 0.1798 0.1847 0.1959 5.94% Gravity::get_old_grav_vector() 10 0.1791 0.184 0.1952 5.92% Castro::construct_new_gravity() 10 0.1855 0.1861 0.1869 5.67% Amr::init() 1 0.1817 0.1818 0.1818 5.52% FillPatchIterator::Initialize 41 0.159 0.1655 0.1752 5.32% Castro::initialize_do_advance() 10 0.1501 0.1644 0.172 5.22% Amr::initialInit() 1 0.1665 0.1667 0.1668 5.06% Amr::InitializeInit() 1 0.05829 0.0947 0.1399 4.24% Amr::defBaseLevel() 1 0.05828 0.0947 0.1399 4.24% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1214 0.1278 3.88% FillPatchSingleLevel 41 0.1127 0.1213 0.1277 3.87% Castro::initData() 1 0.04261 0.0777 0.1214 3.68% Castro::clean_state() 62 0.1078 0.1149 0.1191 3.61% Castro::expand_state() 10 0.1005 0.11 0.1158 3.51% Castro::estTimeStep() 21 0.02411 0.07319 0.1104 3.35% Amr::FinalizeInit() 1 0.02684 0.07196 0.1083 3.29% Castro::do_old_sources() 10 0.09499 0.09717 0.101 3.06% FabArray::ParallelCopy() 41 0.08047 0.08826 0.09626 2.92% amrex::Copy() 193 0.07429 0.08145 0.08983 2.73% Castro::computeInitialDt() 2 0.002166 0.04731 0.08359 2.54% FabArray::setVal() 143 0.06533 0.07081 0.07659 2.32% Castro::initialize_advance() 10 0.06956 0.07339 0.07638 2.32% Castro::do_new_sources() 10 0.06075 0.06567 0.07199 2.18% Castro::computeTemp() 63 0.0571 0.06361 0.06706 2.03% FabArray::ParallelCopy_finish() 41 0.03768 0.04635 0.05742 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04068 0.04544 0.04719 1.43% Castro::normalize_species() 62 0.04512 0.04585 0.04691 1.42% Castro::reset_internal_energy(Fab) 1008 0.0404 0.04514 0.04688 1.42% FabArray::ParallelCopy_nowait() 41 0.03874 0.04182 0.04376 1.33% StateDataPhysBCFunct::() 41 0.02955 0.03302 0.03843 1.17% StateData::FillBoundary(geom) 41 0.02945 0.03292 0.03832 1.16% Castro::construct_new_source() 50 0.02976 0.03125 0.03332 1.01% Gravity::interpolate_monopole_grav() 21 0.02668 0.02727 0.02831 0.86% Castro::construct_new_gravity_source() 10 0.02381 0.02514 0.02717 0.82% Amr::writePlotFile() 2 0.02426 0.02433 0.02455 0.75% Castro::post_init() 1 0.02385 0.02411 0.02427 0.74% Castro::finalize_do_advance() 10 0.01154 0.01814 0.02357 0.72% Castro::post_timestep() 10 0.01451 0.01579 0.0165 0.50% Castro::apply_source_to_state() 20 0.01222 0.01328 0.01452 0.44% FabArray::Saxpy() 20 0.01217 0.01323 0.01448 0.44% VisMF::Write(FabArray) 2 0.009426 0.009939 0.01245 0.38% Castro::check_for_nan() 20 0.01081 0.01163 0.01241 0.38% MultiFab::contains_nan() 20 0.01078 0.0116 0.01238 0.38% Castro::Castro() 1 0.009971 0.01099 0.0121 0.37% FabArray::setDomainBndry() 41 0.007271 0.01043 0.01172 0.36% Castro::construct_old_source() 50 0.008673 0.01031 0.01074 0.33% Castro::construct_old_gravity_source() 10 0.008592 0.01024 0.01066 0.32% Castro::computeNewDt() 9 0.008852 0.008872 0.008885 0.27% Castro::initMFs() 1 0.006436 0.007303 0.008421 0.26% Other 261 0.02614 0.02926 0.03167 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8667 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6732 KiB 6738 KiB 6740 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4531 KiB 4538 KiB 4545 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 226 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2791 KiB 2794 KiB 2795 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 239 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized