Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 06:19:39 UTC on 2024-12-11. Successfully read inputs file ... Castro git describe: 24.12-2-g5d9a59a2a AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017679237 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357088364 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335489682 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330526944 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309434458 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355195295 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313017628 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.317225661 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298910604 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300005812 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300203694 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008885518 seconds Ending run at 06:19:42 UTC on 2024-12-11. Run time = 3.417332505 Run time without initialization = 3.232737913 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4148 ... 3.4168 ... 3.4174 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1299 2.1837 2.2637 66.24% Gravity::make_radial_gravity() 21 0.3196 0.3306 0.3406 9.97% check_for_negative_density() 10 0.03675 0.1204 0.1788 5.23% Castro::initData() 1 0.0374 0.07385 0.1133 3.32% Castro::estTimeStep() 21 0.03243 0.07101 0.108 3.16% amrex::Copy() 193 0.07463 0.08698 0.09712 2.84% FabArray::ParallelCopy_finish() 41 0.04027 0.0572 0.07993 2.34% FabArray::setVal() 143 0.05622 0.06309 0.07145 2.09% Castro::normalize_species() 62 0.0457 0.04695 0.04852 1.42% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04662 0.04797 1.40% FabArray::ParallelCopy_nowait() 41 0.03936 0.04417 0.04782 1.40% FillPatchIterator::Initialize 41 0.03425 0.03849 0.04153 1.22% StateData::FillBoundary(geom) 41 0.03343 0.03569 0.03848 1.13% Gravity::interpolate_monopole_grav() 21 0.02712 0.02795 0.02874 0.84% Castro::construct_new_gravity_source() 10 0.02079 0.02267 0.02535 0.74% Castro::computeTemp() 63 0.01803 0.01872 0.01966 0.58% Castro::initialize_do_advance() 10 0.01494 0.01759 0.01909 0.56% VisMF::Write(FabArray) 2 0.01014 0.01106 0.01514 0.44% Amr::writePlotFile() 2 0.008952 0.01278 0.01397 0.41% FabArray::setDomainBndry() 41 0.01077 0.01234 0.0135 0.39% MultiFab::contains_nan() 20 0.01145 0.01208 0.01341 0.39% FabArray::Saxpy() 20 0.009535 0.01168 0.01309 0.38% Castro::initialize_advance() 10 0.01094 0.01122 0.01198 0.35% Castro::construct_old_gravity_source() 10 0.007446 0.008736 0.009702 0.28% Castro::initMFs() 1 0.007633 0.008038 0.008687 0.25% Castro::construct_new_source() 50 0.005252 0.005833 0.006205 0.18% main() 1 0.003548 0.00553 0.006135 0.18% Gravity::get_new_grav_vector() 11 0.003349 0.003848 0.004371 0.13% Gravity::get_old_grav_vector() 10 0.002211 0.002656 0.003864 0.11% Amr::coarseTimeStep() 10 0.001128 0.001744 0.002633 0.08% AmrLevel::FillPatch() 41 0.001161 0.001343 0.0017 0.05% Castro::finalize_do_advance() 10 0.0009009 0.001013 0.001169 0.03% Amr::timeStep() 10 0.0001891 0.0002427 0.0004363 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.0002967 0.0003175 0.01% Castro::do_advance_ctu() 10 0.0001455 0.0001583 0.00017 0.00% Castro::clean_state() 62 0.0001417 0.0001589 0.0001677 0.00% StateDataPhysBCFunct::() 41 0.000102 0.0001138 0.00014 0.00% FillPatchIterator::FillFromLevel0() 41 9.914e-05 0.000106 0.0001161 0.00% Castro::do_old_sources() 10 8.254e-05 9.181e-05 0.0001066 0.00% FabArray::ParallelCopy() 41 8.68e-05 9.802e-05 0.000101 0.00% Castro::Castro() 1 5.27e-05 6.657e-05 9.172e-05 0.00% Amr::FinalizeInit() 1 3.267e-06 1.446e-05 8.538e-05 0.00% Castro::construct_old_source() 50 6.14e-05 7.091e-05 7.813e-05 0.00% FillPatchSingleLevel 41 6.62e-05 6.845e-05 7.41e-05 0.00% Castro::do_new_sources() 10 5.637e-05 6.357e-05 6.793e-05 0.00% Castro::subcycle_advance_ctu() 10 4.126e-05 4.831e-05 6.041e-05 0.00% Castro::advance() 10 4.029e-05 4.6e-05 5.632e-05 0.00% Castro::apply_source_to_state() 20 3.691e-05 4.539e-05 5.4e-05 0.00% Castro::construct_old_gravity() 10 3.353e-05 4.174e-05 4.959e-05 0.00% Amr::defBaseLevel() 1 3.153e-05 4.249e-05 4.905e-05 0.00% Castro::expand_state() 10 2.106e-05 2.985e-05 4.345e-05 0.00% Castro::construct_new_gravity() 10 2.987e-05 3.615e-05 4.283e-05 0.00% Castro::check_for_nan() 20 2.61e-05 3.004e-05 3.377e-05 0.00% Castro::post_timestep() 10 1.367e-05 1.521e-05 1.661e-05 0.00% Castro::post_init() 1 8.289e-06 9.728e-06 1.27e-05 0.00% Castro::computeNewDt() 9 8.952e-06 1.016e-05 1.138e-05 0.00% Amr::InitializeInit() 1 2.55e-06 5.081e-06 7.651e-06 0.00% Castro::computeInitialDt() 2 3.749e-06 4.369e-06 5.036e-06 0.00% Amr::init() 1 1.821e-06 2.401e-06 3.076e-06 0.00% Amr::initialInit() 1 1.378e-06 1.596e-06 1.778e-06 0.00% Other 261 0.01716 0.01931 0.02078 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.415 3.417 3.417 100.00% Amr::coarseTimeStep() 10 3.218 3.218 3.218 94.16% Amr::timeStep() 10 3.205 3.206 3.207 93.83% Castro::advance() 10 3.189 3.19 3.19 93.35% Castro::subcycle_advance_ctu() 10 3.115 3.121 3.127 91.51% Castro::do_advance_ctu() 10 3.115 3.121 3.127 91.51% Castro::construct_ctu_hydro_source() 10 2.32 2.325 2.33 68.19% Gravity::make_radial_gravity() 21 0.339 0.349 0.3574 10.46% AmrLevel::FillPatch() 41 0.2103 0.2253 0.2422 7.09% Castro::construct_old_gravity() 10 0.2093 0.2166 0.2241 6.56% Gravity::get_new_grav_vector() 11 0.2202 0.2221 0.2236 6.54% Gravity::get_old_grav_vector() 10 0.2086 0.2159 0.2235 6.54% FillPatchIterator::Initialize 41 0.1746 0.1884 0.2008 5.88% Castro::construct_new_gravity() 10 0.1948 0.1964 0.1978 5.79% Castro::initialize_do_advance() 10 0.1738 0.1806 0.1935 5.66% Amr::init() 1 0.184 0.1842 0.1842 5.39% check_for_negative_density() 10 0.03675 0.1204 0.1788 5.23% Amr::initialInit() 1 0.1661 0.1662 0.1663 4.87% FillPatchIterator::FillFromLevel0() 41 0.1208 0.1375 0.1537 4.50% FillPatchSingleLevel 41 0.1207 0.1374 0.1536 4.50% Amr::InitializeInit() 1 0.05941 0.09648 0.1366 4.00% Amr::defBaseLevel() 1 0.05941 0.09648 0.1366 4.00% Castro::expand_state() 10 0.1174 0.1241 0.136 3.98% Castro::clean_state() 62 0.1155 0.1178 0.1208 3.53% FabArray::ParallelCopy() 41 0.08635 0.1016 0.1195 3.50% Castro::initData() 1 0.04135 0.07783 0.117 3.42% Castro::do_old_sources() 10 0.09965 0.103 0.1105 3.23% Castro::estTimeStep() 21 0.03243 0.07101 0.108 3.16% Amr::FinalizeInit() 1 0.02952 0.06971 0.1069 3.13% amrex::Copy() 193 0.07463 0.08698 0.09712 2.84% FabArray::ParallelCopy_finish() 41 0.04027 0.0572 0.07993 2.34% Castro::computeInitialDt() 2 0.002266 0.04231 0.0794 2.32% Castro::initialize_advance() 10 0.05946 0.06598 0.07206 2.11% FabArray::setVal() 143 0.05622 0.06309 0.07145 2.09% Castro::computeTemp() 63 0.06351 0.06564 0.06794 1.99% Castro::do_new_sources() 10 0.05939 0.06113 0.06463 1.89% Castro::normalize_species() 62 0.0457 0.04695 0.04852 1.42% Castro::reset_internal_energy(MultiFab) 63 0.04548 0.04692 0.04829 1.41% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04662 0.04797 1.40% FabArray::ParallelCopy_nowait() 41 0.03945 0.04426 0.04791 1.40% StateDataPhysBCFunct::() 41 0.03354 0.0358 0.03859 1.13% StateData::FillBoundary(geom) 41 0.03343 0.03569 0.03848 1.13% Castro::construct_new_source() 50 0.02617 0.0285 0.0315 0.92% Gravity::interpolate_monopole_grav() 21 0.02712 0.02795 0.02874 0.84% Amr::writePlotFile() 2 0.02682 0.02699 0.02714 0.79% Castro::post_init() 1 0.02671 0.02692 0.02707 0.79% Castro::construct_new_gravity_source() 10 0.02079 0.02267 0.02535 0.74% Castro::finalize_do_advance() 10 0.0156 0.02081 0.02287 0.67% Castro::post_timestep() 10 0.0154 0.01603 0.01628 0.48% VisMF::Write(FabArray) 2 0.01014 0.01106 0.01514 0.44% FabArray::setDomainBndry() 41 0.01077 0.01234 0.0135 0.39% Castro::check_for_nan() 20 0.01147 0.01211 0.01344 0.39% MultiFab::contains_nan() 20 0.01145 0.01208 0.01341 0.39% Castro::apply_source_to_state() 20 0.009571 0.01173 0.01314 0.38% FabArray::Saxpy() 20 0.009535 0.01168 0.01309 0.38% Castro::Castro() 1 0.01155 0.01204 0.01254 0.37% Castro::construct_old_source() 50 0.007515 0.008807 0.009778 0.29% Castro::construct_old_gravity_source() 10 0.007446 0.008736 0.009702 0.28% Castro::computeNewDt() 9 0.008916 0.008923 0.008935 0.26% Castro::initMFs() 1 0.007633 0.008038 0.008687 0.25% Other 261 0.02735 0.03043 0.03325 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8664 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6747 KiB 6749 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4562 KiB 4570 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 231 KiB 247 KiB 268 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 18 KiB 19 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 252 KiB 260 KiB 266 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 78 KiB 81 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized