Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 20:11:14 UTC on 2024-12-12. Successfully read inputs file ... Castro git describe: 24.12-11-g24a2f2847 AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014469525 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336857296 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.315582239 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335720874 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310531275 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.354762689 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296459346 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.28663896 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.285234087 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.28498507 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.283594009 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007881668 seconds Ending run at 20:11:17 UTC on 2024-12-12. Run time = 3.283657852 Run time without initialization = 3.103730204 Average number of zones advanced per microsecond: 0.845 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2827 ... 3.2830 ... 3.2837 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9943 2.1183 2.2033 67.10% Gravity::make_radial_gravity() 21 0.2881 0.2942 0.3113 9.48% check_for_negative_density() 10 0.02289 0.1091 0.2355 7.17% Castro::estTimeStep() 21 0.02338 0.07111 0.1127 3.43% Castro::initData() 1 0.03701 0.07295 0.1127 3.43% amrex::Copy() 193 0.07436 0.08414 0.08997 2.74% FabArray::setVal() 143 0.06786 0.07026 0.07428 2.26% FabArray::ParallelCopy_finish() 41 0.03693 0.04573 0.06099 1.86% Castro::normalize_species() 62 0.04531 0.04769 0.05089 1.55% Castro::reset_internal_energy(Fab) 1008 0.04544 0.04726 0.04904 1.49% FabArray::ParallelCopy_nowait() 41 0.03904 0.04236 0.04383 1.33% FillPatchIterator::Initialize 41 0.02788 0.03429 0.03731 1.14% StateData::FillBoundary(geom) 41 0.02901 0.03236 0.03509 1.07% Gravity::interpolate_monopole_grav() 21 0.02702 0.02751 0.02814 0.86% Castro::construct_new_gravity_source() 10 0.0234 0.02484 0.02653 0.81% Castro::computeTemp() 63 0.01822 0.01859 0.01895 0.58% Castro::initialize_do_advance() 10 0.01426 0.0171 0.01817 0.55% Castro::initialize_advance() 10 0.01101 0.01281 0.01509 0.46% FabArray::Saxpy() 20 0.01234 0.01302 0.01356 0.41% MultiFab::contains_nan() 20 0.01035 0.01116 0.01229 0.37% VisMF::Write(FabArray) 2 0.009188 0.009679 0.01206 0.37% FabArray::setDomainBndry() 41 0.008738 0.01069 0.0119 0.36% Castro::construct_old_gravity_source() 10 0.008342 0.01012 0.01056 0.32% Amr::writePlotFile() 2 0.007452 0.009734 0.01051 0.32% Castro::initMFs() 1 0.006177 0.007343 0.01009 0.31% Castro::construct_new_source() 50 0.006154 0.006358 0.006498 0.20% main() 1 0.003895 0.004249 0.004932 0.15% Gravity::get_new_grav_vector() 11 0.002925 0.003563 0.003919 0.12% Gravity::get_old_grav_vector() 10 0.001502 0.002164 0.002548 0.08% Amr::coarseTimeStep() 10 0.0009884 0.001725 0.00254 0.08% Castro::finalize_do_advance() 10 0.0006972 0.001062 0.001126 0.03% AmrLevel::FillPatch() 41 0.0007946 0.0009352 0.001002 0.03% Amr::timeStep() 10 0.0001666 0.0002263 0.0003412 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002928 0.0003065 0.01% Castro::do_advance_ctu() 10 0.0001442 0.0001767 0.0002104 0.01% Castro::clean_state() 62 0.0001478 0.0001595 0.0001725 0.01% StateDataPhysBCFunct::() 41 0.0001001 0.0001099 0.0001179 0.00% Castro::do_old_sources() 10 8.739e-05 9.969e-05 0.0001143 0.00% FillPatchIterator::FillFromLevel0() 41 9.722e-05 0.0001034 0.0001132 0.00% FabArray::ParallelCopy() 41 8.759e-05 9.591e-05 0.0001059 0.00% Amr::FinalizeInit() 1 3.888e-06 1.607e-05 9.484e-05 0.00% Castro::construct_old_source() 50 6.351e-05 7.752e-05 8.905e-05 0.00% Castro::Castro() 1 4.976e-05 6.724e-05 8.184e-05 0.00% FillPatchSingleLevel 41 6.306e-05 7.116e-05 7.938e-05 0.00% Castro::do_new_sources() 10 6.272e-05 7.027e-05 7.57e-05 0.00% Castro::subcycle_advance_ctu() 10 5.043e-05 5.83e-05 7.025e-05 0.00% Castro::advance() 10 3.899e-05 4.779e-05 6.14e-05 0.00% Castro::apply_source_to_state() 20 4.211e-05 4.925e-05 5.686e-05 0.00% Amr::defBaseLevel() 1 2.583e-05 3.831e-05 4.856e-05 0.00% Castro::construct_old_gravity() 10 3.732e-05 4.011e-05 4.81e-05 0.00% Castro::construct_new_gravity() 10 3.031e-05 3.659e-05 4.378e-05 0.00% Castro::expand_state() 10 2.24e-05 3.183e-05 4.235e-05 0.00% Castro::check_for_nan() 20 2.311e-05 2.563e-05 2.968e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.211e-06 1.108e-05 1.916e-05 0.00% Castro::post_timestep() 10 1.346e-05 1.589e-05 1.797e-05 0.00% Castro::computeNewDt() 9 8.824e-06 1.002e-05 1.141e-05 0.00% Castro::post_init() 1 8.13e-06 8.795e-06 9.323e-06 0.00% Amr::InitializeInit() 1 2.464e-06 3.335e-06 5.586e-06 0.00% Castro::computeInitialDt() 2 3.179e-06 3.747e-06 4.735e-06 0.00% Amr::init() 1 1.979e-06 2.529e-06 3.054e-06 0.00% Amr::initialInit() 1 1.314e-06 1.772e-06 2.442e-06 0.00% Other 260 0.01585 0.01868 0.02177 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.283 3.283 3.284 100.00% Amr::coarseTimeStep() 10 3.091 3.091 3.091 94.13% Amr::timeStep() 10 3.079 3.08 3.08 93.80% Castro::advance() 10 3.063 3.063 3.063 93.28% Castro::subcycle_advance_ctu() 10 2.983 2.985 2.988 91.00% Castro::do_advance_ctu() 10 2.983 2.985 2.988 90.99% Castro::construct_ctu_hydro_source() 10 2.248 2.249 2.251 68.56% Gravity::make_radial_gravity() 21 0.3059 0.3115 0.327 9.96% check_for_negative_density() 10 0.02289 0.1091 0.2355 7.17% Gravity::get_new_grav_vector() 11 0.2071 0.208 0.2091 6.37% AmrLevel::FillPatch() 41 0.1924 0.2002 0.2081 6.34% Castro::construct_old_gravity() 10 0.1834 0.1881 0.2015 6.14% Gravity::get_old_grav_vector() 10 0.1827 0.1874 0.2009 6.12% Castro::construct_new_gravity() 10 0.1842 0.1854 0.1867 5.68% Amr::init() 1 0.1794 0.1795 0.1796 5.47% FillPatchIterator::Initialize 41 0.16 0.1659 0.1717 5.23% Castro::initialize_do_advance() 10 0.1527 0.1633 0.1687 5.14% Amr::initialInit() 1 0.1647 0.165 0.1652 5.03% Amr::InitializeInit() 1 0.05615 0.09405 0.1383 4.21% Amr::defBaseLevel() 1 0.05615 0.09405 0.1383 4.21% FillPatchIterator::FillFromLevel0() 41 0.1134 0.1209 0.1295 3.94% FillPatchSingleLevel 41 0.1133 0.1208 0.1294 3.94% Castro::clean_state() 62 0.1151 0.1191 0.1239 3.77% Castro::initData() 1 0.04092 0.07671 0.1162 3.54% Castro::expand_state() 10 0.1022 0.1094 0.1147 3.49% Castro::estTimeStep() 21 0.02338 0.07111 0.1127 3.43% Amr::FinalizeInit() 1 0.02674 0.07098 0.109 3.32% Castro::do_old_sources() 10 0.0969 0.09894 0.1017 3.10% FabArray::ParallelCopy() 41 0.08091 0.08828 0.1002 3.05% amrex::Copy() 193 0.07436 0.08414 0.08997 2.74% Castro::computeInitialDt() 2 0.002226 0.04654 0.08448 2.57% Castro::initialize_advance() 10 0.07105 0.07411 0.07677 2.34% FabArray::setVal() 143 0.06786 0.07026 0.07428 2.26% Castro::do_new_sources() 10 0.06295 0.06645 0.06991 2.13% Castro::computeTemp() 63 0.06396 0.06615 0.0682 2.08% FabArray::ParallelCopy_finish() 41 0.03693 0.04573 0.06099 1.86% Castro::normalize_species() 62 0.04531 0.04769 0.05089 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04575 0.04756 0.04934 1.50% Castro::reset_internal_energy(Fab) 1008 0.04544 0.04726 0.04904 1.49% FabArray::ParallelCopy_nowait() 41 0.03915 0.04245 0.04392 1.34% StateDataPhysBCFunct::() 41 0.02912 0.03247 0.0352 1.07% StateData::FillBoundary(geom) 41 0.02901 0.03236 0.03509 1.07% Castro::construct_new_source() 50 0.02955 0.0312 0.03302 1.01% Gravity::interpolate_monopole_grav() 21 0.02702 0.02751 0.02814 0.86% Castro::construct_new_gravity_source() 10 0.0234 0.02484 0.02653 0.81% Castro::post_init() 1 0.02369 0.02385 0.02407 0.73% Amr::writePlotFile() 2 0.02233 0.02247 0.02285 0.70% Castro::finalize_do_advance() 10 0.0127 0.01708 0.02113 0.64% Castro::post_timestep() 10 0.0156 0.01639 0.01713 0.52% Castro::Castro() 1 0.009652 0.01108 0.0141 0.43% Castro::apply_source_to_state() 20 0.01238 0.01307 0.01361 0.41% FabArray::Saxpy() 20 0.01234 0.01302 0.01356 0.41% Castro::check_for_nan() 20 0.01038 0.01118 0.01231 0.37% MultiFab::contains_nan() 20 0.01035 0.01116 0.01229 0.37% VisMF::Write(FabArray) 2 0.009188 0.009679 0.01206 0.37% FabArray::setDomainBndry() 41 0.008738 0.01069 0.0119 0.36% Castro::construct_old_source() 50 0.008406 0.0102 0.01064 0.32% Castro::construct_old_gravity_source() 10 0.008342 0.01012 0.01056 0.32% Castro::initMFs() 1 0.006177 0.007343 0.01009 0.31% Castro::computeNewDt() 9 0.008549 0.008567 0.008575 0.26% AmrLevel::AmrLevel(dm) 1 0.005202 0.006103 0.007921 0.24% Other 260 0.02066 0.02393 0.02743 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8667 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6736 KiB 6742 KiB 6743 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4539 KiB 4542 KiB 4545 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 228 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 241 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized