Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 06:19:05 UTC on 2024-12-12. Successfully read inputs file ... Castro git describe: 24.12-2-g5d9a59a2a AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01557146 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34464046 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.351230879 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.358973086 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.368720553 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374437846 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.361729229 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.357364859 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.357497175 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.356847132 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.360447678 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012656755 seconds Ending run at 06:19:09 UTC on 2024-12-12. Run time = 3.792744369 Run time without initialization = 3.612715027 Average number of zones advanced per microsecond: 0.726 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7914 ... 3.7921 ... 3.7928 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1601 2.3304 2.5181 66.39% check_for_negative_density() 10 0.02332 0.2147 0.3887 10.25% Gravity::make_radial_gravity() 21 0.2987 0.3172 0.3358 8.85% amrex::Copy() 193 0.09922 0.1117 0.1302 3.43% Castro::initData() 1 0.03861 0.07312 0.1153 3.04% Castro::estTimeStep() 21 0.02697 0.07221 0.1069 2.82% FabArray::setVal() 143 0.09152 0.09542 0.1058 2.79% FabArray::ParallelCopy_finish() 41 0.05869 0.0665 0.07237 1.91% FabArray::ParallelCopy_nowait() 41 0.05723 0.05992 0.06285 1.66% FillPatchIterator::Initialize 41 0.0479 0.05206 0.05707 1.50% Castro::reset_internal_energy(Fab) 1008 0.04756 0.04986 0.05245 1.38% Castro::normalize_species() 62 0.04641 0.04719 0.04785 1.26% StateData::FillBoundary(geom) 41 0.03499 0.03865 0.04264 1.12% Castro::construct_new_gravity_source() 10 0.02912 0.03189 0.03508 0.92% Gravity::interpolate_monopole_grav() 21 0.02713 0.02779 0.02822 0.74% Castro::initialize_do_advance() 10 0.02193 0.02432 0.02584 0.68% Castro::computeTemp() 63 0.01858 0.01952 0.02059 0.54% FabArray::Saxpy() 20 0.01613 0.01821 0.02004 0.53% FabArray::setDomainBndry() 41 0.01585 0.01722 0.01882 0.50% Castro::initialize_advance() 10 0.01438 0.01495 0.01551 0.41% MultiFab::contains_nan() 20 0.01213 0.01417 0.01536 0.40% VisMF::Write(FabArray) 2 0.009989 0.01141 0.01528 0.40% Castro::construct_old_gravity_source() 10 0.01411 0.01464 0.01485 0.39% Amr::writePlotFile() 2 0.008748 0.01289 0.01425 0.38% Castro::initMFs() 1 0.006341 0.006949 0.008511 0.22% Castro::construct_new_source() 50 0.007255 0.00764 0.008229 0.22% main() 1 0.006163 0.006926 0.007566 0.20% Gravity::get_new_grav_vector() 11 0.004189 0.004994 0.005816 0.15% Amr::coarseTimeStep() 10 0.001422 0.002749 0.003668 0.10% Gravity::get_old_grav_vector() 10 0.00256 0.002886 0.00354 0.09% AmrLevel::FillPatch() 41 0.001242 0.001382 0.001462 0.04% Castro::finalize_do_advance() 10 0.001261 0.00132 0.001392 0.04% Amr::timeStep() 10 0.0001671 0.0002392 0.0003597 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003104 0.0003285 0.0003591 0.01% Castro::do_advance_ctu() 10 0.0001743 0.0002012 0.0002351 0.01% Castro::clean_state() 62 0.0001752 0.0001903 0.0002138 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001237 0.0001319 0.0001383 0.00% StateDataPhysBCFunct::() 41 0.0001089 0.0001198 0.0001371 0.00% Castro::do_old_sources() 10 0.0001012 0.0001178 0.0001331 0.00% FabArray::ParallelCopy() 41 9.39e-05 0.0001153 0.0001278 0.00% Castro::construct_old_source() 50 9.025e-05 9.812e-05 0.0001089 0.00% Castro::Castro() 1 5.208e-05 7.621e-05 0.0001087 0.00% FillPatchSingleLevel 41 7.997e-05 8.495e-05 9.157e-05 0.00% Castro::apply_source_to_state() 20 5.28e-05 6.415e-05 8.916e-05 0.00% Castro::subcycle_advance_ctu() 10 5.657e-05 7.074e-05 8.623e-05 0.00% Castro::do_new_sources() 10 6.055e-05 7.335e-05 7.93e-05 0.00% Amr::FinalizeInit() 1 3.781e-06 1.237e-05 6.869e-05 0.00% Castro::advance() 10 4.502e-05 5.435e-05 6.361e-05 0.00% Castro::expand_state() 10 3.139e-05 4.212e-05 5.811e-05 0.00% Castro::construct_new_gravity() 10 3.175e-05 4.518e-05 5.766e-05 0.00% Castro::construct_old_gravity() 10 3.946e-05 4.484e-05 5.309e-05 0.00% Amr::defBaseLevel() 1 2.603e-05 3.291e-05 3.855e-05 0.00% Castro::check_for_nan() 20 2.865e-05 3.164e-05 3.607e-05 0.00% Castro::post_timestep() 10 1.617e-05 2.028e-05 2.266e-05 0.00% Castro::computeNewDt() 9 8.495e-06 1.088e-05 1.756e-05 0.00% Castro::post_init() 1 8.249e-06 9.378e-06 1.042e-05 0.00% Amr::initialInit() 1 1.028e-06 2.292e-06 7.154e-06 0.00% Amr::InitializeInit() 1 2.589e-06 3.731e-06 6.644e-06 0.00% Castro::computeInitialDt() 2 2.742e-06 3.519e-06 4.109e-06 0.00% Amr::init() 1 1.718e-06 2.296e-06 3.613e-06 0.00% Other 261 0.01667 0.01911 0.02115 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.791 3.792 3.793 100.00% Amr::coarseTimeStep() 10 3.593 3.593 3.593 94.72% Amr::timeStep() 10 3.579 3.58 3.581 94.42% Castro::advance() 10 3.564 3.564 3.565 93.99% Castro::subcycle_advance_ctu() 10 3.455 3.465 3.469 91.47% Castro::do_advance_ctu() 10 3.455 3.465 3.469 91.46% Castro::construct_ctu_hydro_source() 10 2.564 2.568 2.572 67.82% check_for_negative_density() 10 0.02332 0.2147 0.3887 10.25% Gravity::make_radial_gravity() 21 0.3257 0.3405 0.358 9.44% AmrLevel::FillPatch() 41 0.2679 0.2819 0.2969 7.83% Castro::initialize_do_advance() 10 0.2169 0.2295 0.2439 6.43% FillPatchIterator::Initialize 41 0.2276 0.2349 0.2427 6.40% Gravity::get_new_grav_vector() 11 0.2289 0.2311 0.2325 6.13% Castro::construct_old_gravity() 10 0.1988 0.2088 0.2226 5.87% Gravity::get_old_grav_vector() 10 0.1978 0.2078 0.2217 5.85% Castro::construct_new_gravity() 10 0.207 0.2086 0.2102 5.54% Amr::init() 1 0.1795 0.1796 0.1797 4.74% Castro::expand_state() 10 0.1481 0.1613 0.1766 4.66% FillPatchIterator::FillFromLevel0() 41 0.1567 0.1656 0.1699 4.48% FillPatchSingleLevel 41 0.1566 0.1655 0.1698 4.48% Amr::initialInit() 1 0.1635 0.1638 0.164 4.32% Amr::InitializeInit() 1 0.05815 0.09356 0.1376 3.63% Amr::defBaseLevel() 1 0.05815 0.09356 0.1376 3.63% Castro::do_old_sources() 10 0.1315 0.1325 0.1336 3.52% FabArray::ParallelCopy() 41 0.1197 0.1266 0.1311 3.46% amrex::Copy() 193 0.09922 0.1117 0.1302 3.43% Castro::clean_state() 62 0.1208 0.1234 0.1264 3.33% Castro::initData() 1 0.04223 0.077 0.1195 3.15% Castro::estTimeStep() 21 0.02697 0.07221 0.1069 2.82% FabArray::setVal() 143 0.09152 0.09542 0.1058 2.79% Amr::FinalizeInit() 1 0.02592 0.07026 0.1056 2.79% Castro::initialize_advance() 10 0.09002 0.09444 0.1038 2.74% Castro::do_new_sources() 10 0.07492 0.078 0.08289 2.19% Castro::computeInitialDt() 2 0.002092 0.04608 0.08136 2.15% Castro::computeTemp() 63 0.06664 0.06971 0.07311 1.93% FabArray::ParallelCopy_finish() 41 0.05869 0.0665 0.07237 1.91% FabArray::ParallelCopy_nowait() 41 0.05734 0.06003 0.06296 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04787 0.05019 0.05281 1.39% Castro::reset_internal_energy(Fab) 1008 0.04756 0.04986 0.05245 1.38% Castro::normalize_species() 62 0.04641 0.04719 0.04785 1.26% Castro::construct_new_source() 50 0.03641 0.03953 0.04294 1.13% StateDataPhysBCFunct::() 41 0.0351 0.03877 0.04277 1.13% StateData::FillBoundary(geom) 41 0.03499 0.03865 0.04264 1.12% Castro::construct_new_gravity_source() 10 0.02912 0.03189 0.03508 0.92% Amr::writePlotFile() 2 0.02845 0.0286 0.02894 0.76% Gravity::interpolate_monopole_grav() 21 0.02713 0.02779 0.02822 0.74% Castro::post_init() 1 0.02328 0.02361 0.02388 0.63% Castro::finalize_do_advance() 10 0.01198 0.01882 0.02328 0.61% Castro::apply_source_to_state() 20 0.01618 0.01827 0.0201 0.53% FabArray::Saxpy() 20 0.01613 0.01821 0.02004 0.53% FabArray::setDomainBndry() 41 0.01585 0.01722 0.01882 0.50% Castro::post_timestep() 10 0.01532 0.01582 0.01686 0.44% Castro::check_for_nan() 20 0.01216 0.0142 0.01539 0.41% MultiFab::contains_nan() 20 0.01213 0.01417 0.01536 0.40% VisMF::Write(FabArray) 2 0.009989 0.01141 0.01528 0.40% Castro::construct_old_source() 50 0.0142 0.01474 0.01495 0.39% Castro::construct_old_gravity_source() 10 0.01411 0.01464 0.01485 0.39% Castro::Castro() 1 0.01017 0.01085 0.01167 0.31% Castro::computeNewDt() 9 0.008632 0.008648 0.008673 0.23% Castro::initMFs() 1 0.006341 0.006949 0.008511 0.22% Other 261 0.0278 0.03123 0.03517 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 29 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6794 KiB 6796 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4564 KiB 4567 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 268 KiB 285 KiB 303 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2818 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 218 KiB 228 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 49 KiB 52 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized