Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 06:19:08 UTC on 2024-12-13. Successfully read inputs file ... Castro git describe: 24.12-5-g50ed9796f AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015095871 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.332969375 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325510135 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325347974 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305501906 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352707586 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307536531 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.285977271 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306584032 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294948279 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.292909716 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008572861 seconds Ending run at 06:19:11 UTC on 2024-12-13. Run time = 3.326620241 Run time without initialization = 3.143982725 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3259 ... 3.3264 ... 3.3267 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0620 2.1215 2.1923 65.90% Gravity::make_radial_gravity() 21 0.2897 0.297 0.3062 9.20% check_for_negative_density() 10 0.07638 0.1484 0.2101 6.32% Castro::initData() 1 0.03706 0.07398 0.1178 3.54% Castro::estTimeStep() 21 0.0258 0.07531 0.1162 3.49% FabArray::ParallelCopy_finish() 41 0.04289 0.05493 0.08788 2.64% amrex::Copy() 193 0.06954 0.08016 0.08785 2.64% FabArray::setVal() 143 0.05872 0.06616 0.07419 2.23% Castro::reset_internal_energy(Fab) 1008 0.04145 0.04581 0.04825 1.45% Castro::normalize_species() 62 0.04565 0.04693 0.04821 1.45% FabArray::ParallelCopy_nowait() 41 0.0369 0.04144 0.04308 1.29% StateData::FillBoundary(geom) 41 0.02934 0.0328 0.0368 1.11% FillPatchIterator::Initialize 41 0.02779 0.03292 0.03502 1.05% Gravity::interpolate_monopole_grav() 21 0.02702 0.02729 0.02752 0.83% Castro::construct_new_gravity_source() 10 0.02297 0.02479 0.02712 0.82% Castro::computeTemp() 63 0.0171 0.01831 0.01902 0.57% Castro::initialize_do_advance() 10 0.01198 0.0166 0.01768 0.53% Castro::initialize_advance() 10 0.005577 0.0106 0.01322 0.40% FabArray::Saxpy() 20 0.01002 0.01219 0.01294 0.39% VisMF::Write(FabArray) 2 0.008936 0.009829 0.01283 0.39% MultiFab::contains_nan() 20 0.01043 0.01144 0.01235 0.37% Amr::writePlotFile() 2 0.008216 0.01092 0.01193 0.36% FabArray::setDomainBndry() 41 0.007722 0.01 0.01127 0.34% Castro::construct_old_gravity_source() 10 0.007337 0.009435 0.009926 0.30% Castro::initMFs() 1 0.006376 0.006855 0.0079 0.24% Castro::construct_new_source() 50 0.005752 0.005978 0.006176 0.19% main() 1 0.004047 0.004534 0.004842 0.15% Gravity::get_new_grav_vector() 11 0.003189 0.003499 0.003821 0.11% Amr::coarseTimeStep() 10 0.001485 0.002301 0.002905 0.09% Gravity::get_old_grav_vector() 10 0.001723 0.002182 0.002626 0.08% Castro::finalize_do_advance() 10 0.0005218 0.001034 0.001129 0.03% AmrLevel::FillPatch() 41 0.0007974 0.0009802 0.001067 0.03% Amr::timeStep() 10 0.00016 0.000237 0.0004766 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002861 0.0003009 0.000325 0.01% Castro::do_advance_ctu() 10 0.0001461 0.0001632 0.0001794 0.01% Castro::clean_state() 62 0.0001305 0.0001608 0.0001708 0.01% FillPatchIterator::FillFromLevel0() 41 9.178e-05 0.0001035 0.000118 0.00% StateDataPhysBCFunct::() 41 9.587e-05 0.0001043 0.0001135 0.00% FabArray::ParallelCopy() 41 8.624e-05 9.354e-05 0.0001089 0.00% Castro::do_old_sources() 10 8.064e-05 9.201e-05 0.0001016 0.00% Amr::FinalizeInit() 1 4.003e-06 1.554e-05 9.167e-05 0.00% Castro::construct_old_source() 50 5.494e-05 7.171e-05 8.438e-05 0.00% Castro::Castro() 1 5.559e-05 7.44e-05 8.292e-05 0.00% FillPatchSingleLevel 41 5.972e-05 6.607e-05 7.452e-05 0.00% Castro::subcycle_advance_ctu() 10 4.061e-05 5.057e-05 6.742e-05 0.00% Castro::do_new_sources() 10 5.55e-05 6.212e-05 6.704e-05 0.00% Castro::apply_source_to_state() 20 3.865e-05 4.995e-05 6.322e-05 0.00% Castro::construct_old_gravity() 10 3.499e-05 4.02e-05 5.862e-05 0.00% Castro::advance() 10 4.07e-05 4.509e-05 4.978e-05 0.00% Amr::defBaseLevel() 1 2.834e-05 3.801e-05 4.686e-05 0.00% Castro::construct_new_gravity() 10 3.149e-05 3.653e-05 4.621e-05 0.00% Castro::expand_state() 10 2.175e-05 2.826e-05 3.474e-05 0.00% Castro::check_for_nan() 20 2.626e-05 2.798e-05 3.178e-05 0.00% Castro::post_timestep() 10 1.313e-05 1.548e-05 1.807e-05 0.00% Castro::post_init() 1 8.788e-06 9.665e-06 1.098e-05 0.00% Castro::computeNewDt() 9 8.55e-06 9.754e-06 1.087e-05 0.00% Amr::initialInit() 1 1.481e-06 2.581e-06 6.994e-06 0.00% Amr::InitializeInit() 1 2.636e-06 3.73e-06 6.255e-06 0.00% Castro::computeInitialDt() 2 3.105e-06 3.878e-06 4.756e-06 0.00% Amr::init() 1 1.999e-06 2.306e-06 3.13e-06 0.00% Other 261 0.01579 0.01832 0.02029 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.326 3.326 3.327 100.00% Amr::coarseTimeStep() 10 3.131 3.131 3.131 94.11% Amr::timeStep() 10 3.118 3.119 3.12 93.77% Castro::advance() 10 3.102 3.103 3.103 93.29% Castro::subcycle_advance_ctu() 10 3.025 3.031 3.043 91.48% Castro::do_advance_ctu() 10 3.025 3.031 3.043 91.48% Castro::construct_ctu_hydro_source() 10 2.287 2.292 2.296 69.01% Gravity::make_radial_gravity() 21 0.3063 0.3132 0.319 9.59% AmrLevel::FillPatch() 41 0.1868 0.2049 0.2195 6.60% Gravity::get_new_grav_vector() 11 0.2094 0.2119 0.2132 6.41% check_for_negative_density() 10 0.07638 0.1484 0.2101 6.32% FillPatchIterator::Initialize 41 0.1582 0.1726 0.1934 5.81% Castro::construct_old_gravity() 10 0.1805 0.1849 0.1901 5.72% Gravity::get_old_grav_vector() 10 0.1798 0.1842 0.1894 5.69% Castro::construct_new_gravity() 10 0.1864 0.1881 0.189 5.68% Amr::init() 1 0.1821 0.1823 0.1823 5.48% Castro::initialize_do_advance() 10 0.1582 0.1692 0.1767 5.31% Amr::initialInit() 1 0.1669 0.1673 0.1678 5.04% FillPatchIterator::FillFromLevel0() 41 0.1209 0.1296 0.1578 4.74% FillPatchSingleLevel 41 0.1208 0.1295 0.1577 4.74% Amr::InitializeInit() 1 0.05738 0.09454 0.1396 4.20% Amr::defBaseLevel() 1 0.05737 0.09454 0.1396 4.20% Castro::expand_state() 10 0.1034 0.1154 0.1263 3.80% FabArray::ParallelCopy() 41 0.08577 0.09655 0.125 3.76% Castro::initData() 1 0.04072 0.07768 0.1213 3.65% Castro::clean_state() 62 0.1121 0.1167 0.12 3.61% Castro::estTimeStep() 21 0.0258 0.07531 0.1162 3.49% Amr::FinalizeInit() 1 0.02818 0.07279 0.11 3.31% Castro::do_old_sources() 10 0.0925 0.09618 0.1001 3.01% FabArray::ParallelCopy_finish() 41 0.04289 0.05493 0.08788 2.64% amrex::Copy() 193 0.06954 0.08016 0.08785 2.64% Castro::computeInitialDt() 2 0.002154 0.04725 0.08425 2.53% Castro::initialize_advance() 10 0.0554 0.06824 0.07455 2.24% FabArray::setVal() 143 0.05872 0.06616 0.07419 2.23% Castro::do_new_sources() 10 0.06011 0.06414 0.07089 2.13% Castro::computeTemp() 63 0.05885 0.06443 0.06751 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04175 0.04611 0.04855 1.46% Castro::reset_internal_energy(Fab) 1008 0.04145 0.04581 0.04825 1.45% Castro::normalize_species() 62 0.04565 0.04693 0.04821 1.45% FabArray::ParallelCopy_nowait() 41 0.037 0.04153 0.04317 1.30% StateDataPhysBCFunct::() 41 0.02944 0.03291 0.03691 1.11% StateData::FillBoundary(geom) 41 0.02934 0.0328 0.0368 1.11% Castro::construct_new_source() 50 0.02896 0.03077 0.03316 1.00% Gravity::interpolate_monopole_grav() 21 0.02702 0.02729 0.02752 0.83% Castro::construct_new_gravity_source() 10 0.02297 0.02479 0.02712 0.82% Castro::post_init() 1 0.02464 0.02503 0.02555 0.77% Castro::finalize_do_advance() 10 0.01374 0.02058 0.02524 0.76% Amr::writePlotFile() 2 0.02309 0.02358 0.02404 0.72% Castro::post_timestep() 10 0.01536 0.01594 0.01645 0.49% Castro::apply_source_to_state() 20 0.01006 0.01224 0.013 0.39% FabArray::Saxpy() 20 0.01002 0.01219 0.01294 0.39% VisMF::Write(FabArray) 2 0.008936 0.009829 0.01283 0.39% Castro::check_for_nan() 20 0.01046 0.01147 0.01238 0.37% MultiFab::contains_nan() 20 0.01043 0.01144 0.01235 0.37% Castro::Castro() 1 0.009434 0.01077 0.0119 0.36% FabArray::setDomainBndry() 41 0.007722 0.01 0.01127 0.34% Castro::construct_old_source() 50 0.007392 0.009507 0.01001 0.30% Castro::construct_old_gravity_source() 10 0.007337 0.009435 0.009926 0.30% Castro::computeNewDt() 9 0.008513 0.00852 0.008526 0.26% Castro::initMFs() 1 0.006376 0.006855 0.0079 0.24% Other 261 0.02582 0.02944 0.03281 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6737 KiB 6743 KiB 6748 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4551 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 233 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 240 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 45 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized