Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 14:45:08 UTC on 2024-12-14. Successfully read inputs file ... Castro git describe: 24.12-7-g0e11b332b AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015510711 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346116405 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.315104019 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.300186709 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.302500849 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.346741776 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296354776 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284377278 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.281755826 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.281903429 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302879162 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008972181 seconds Ending run at 14:45:11 UTC on 2024-12-14. Run time = 3.248700876 Run time without initialization = 3.071810908 Average number of zones advanced per microsecond: 0.853 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2481 ... 3.2485 ... 3.2487 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0598 2.0981 2.1325 65.64% Gravity::make_radial_gravity() 21 0.2977 0.3053 0.3185 9.80% check_for_negative_density() 10 0.05706 0.09512 0.1343 4.13% Castro::initData() 1 0.03715 0.07664 0.1108 3.41% Castro::estTimeStep() 21 0.0333 0.06412 0.1083 3.33% amrex::Copy() 193 0.06386 0.07834 0.08826 2.72% FabArray::ParallelCopy_finish() 41 0.04092 0.05198 0.08814 2.71% FabArray::setVal() 143 0.06142 0.06768 0.07436 2.29% Castro::normalize_species() 62 0.04524 0.04726 0.0507 1.56% Castro::reset_internal_energy(Fab) 1008 0.04294 0.04591 0.04888 1.50% FabArray::ParallelCopy_nowait() 41 0.03494 0.04081 0.04282 1.32% StateData::FillBoundary(geom) 41 0.02953 0.03279 0.03679 1.13% FillPatchIterator::Initialize 41 0.02692 0.03275 0.03522 1.08% Gravity::interpolate_monopole_grav() 21 0.02688 0.02736 0.02781 0.86% Castro::construct_new_gravity_source() 10 0.02284 0.02461 0.02725 0.84% Castro::initialize_do_advance() 10 0.01203 0.01763 0.01923 0.59% Castro::computeTemp() 63 0.01727 0.01835 0.01915 0.59% Amr::writePlotFile() 2 0.008431 0.01193 0.01468 0.45% FabArray::setDomainBndry() 41 0.007975 0.01133 0.01387 0.43% VisMF::Write(FabArray) 2 0.008477 0.009757 0.01357 0.42% FabArray::Saxpy() 20 0.01021 0.01217 0.01332 0.41% Castro::initialize_advance() 10 0.005254 0.01088 0.01315 0.40% MultiFab::contains_nan() 20 0.0101 0.01109 0.01182 0.36% Castro::construct_old_gravity_source() 10 0.006976 0.009546 0.01048 0.32% Castro::initMFs() 1 0.006305 0.006916 0.007548 0.23% Castro::enforce_min_density() 62 0.005575 0.006019 0.006469 0.20% Castro::construct_new_source() 50 0.005857 0.005999 0.006187 0.19% main() 1 0.003777 0.004166 0.004365 0.13% Gravity::get_new_grav_vector() 11 0.002845 0.003475 0.003877 0.12% Amr::coarseTimeStep() 10 0.001643 0.002512 0.002801 0.09% Gravity::get_old_grav_vector() 10 0.001722 0.002218 0.002623 0.08% Castro::finalize_do_advance() 10 0.0003904 0.0009812 0.001119 0.03% AmrLevel::FillPatch() 41 0.000682 0.0007941 0.0009021 0.03% Amr::timeStep() 10 0.0001635 0.0002217 0.0003836 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002827 0.0002971 0.0003192 0.01% Castro::do_advance_ctu() 10 0.000134 0.0001592 0.0001952 0.01% Castro::clean_state() 62 0.0001461 0.0001606 0.0001729 0.01% FillPatchIterator::FillFromLevel0() 41 9.278e-05 0.0001081 0.0001235 0.00% StateDataPhysBCFunct::() 41 9.245e-05 0.0001044 0.0001137 0.00% FabArray::ParallelCopy() 41 8.585e-05 9.614e-05 0.0001124 0.00% Castro::do_old_sources() 10 7.932e-05 9.296e-05 9.906e-05 0.00% Castro::Castro() 1 5.618e-05 6.744e-05 8.35e-05 0.00% Castro::construct_old_source() 50 5.342e-05 7.303e-05 8.19e-05 0.00% FillPatchSingleLevel 41 5.978e-05 6.782e-05 7.758e-05 0.00% Amr::FinalizeInit() 1 3.465e-06 1.337e-05 7.374e-05 0.00% Castro::do_new_sources() 10 4.933e-05 6.044e-05 7.228e-05 0.00% Castro::apply_source_to_state() 20 3.648e-05 4.894e-05 6.573e-05 0.00% Castro::subcycle_advance_ctu() 10 3.797e-05 4.822e-05 5.814e-05 0.00% Castro::advance() 10 3.93e-05 4.541e-05 5.431e-05 0.00% Amr::defBaseLevel() 1 2.676e-05 4.273e-05 5.3e-05 0.00% Castro::construct_old_gravity() 10 3.476e-05 3.946e-05 4.425e-05 0.00% Castro::construct_new_gravity() 10 2.856e-05 3.557e-05 4.064e-05 0.00% Castro::expand_state() 10 2.151e-05 2.583e-05 3.223e-05 0.00% Castro::check_for_nan() 20 2.14e-05 2.462e-05 2.673e-05 0.00% Castro::post_timestep() 10 1.411e-05 1.565e-05 1.778e-05 0.00% Castro::computeNewDt() 9 9.365e-06 1.006e-05 1.092e-05 0.00% Castro::post_init() 1 7.996e-06 9.044e-06 9.649e-06 0.00% Amr::InitializeInit() 1 2.77e-06 3.575e-06 5.143e-06 0.00% Castro::computeInitialDt() 2 3.269e-06 3.978e-06 4.897e-06 0.00% Amr::init() 1 1.995e-06 2.213e-06 2.422e-06 0.00% Amr::initialInit() 1 1.263e-06 1.609e-06 1.993e-06 0.00% Other 199 0.01007 0.01212 0.01368 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.248 3.249 3.249 100.00% Amr::coarseTimeStep() 10 3.059 3.059 3.059 94.15% Amr::timeStep() 10 3.046 3.046 3.047 93.79% Castro::advance() 10 3.03 3.03 3.031 93.29% Castro::subcycle_advance_ctu() 10 2.953 2.957 2.966 91.31% Castro::do_advance_ctu() 10 2.953 2.957 2.966 91.31% Castro::construct_ctu_hydro_source() 10 2.209 2.215 2.217 68.25% Gravity::make_radial_gravity() 21 0.3132 0.3211 0.3312 10.19% AmrLevel::FillPatch() 41 0.1842 0.2023 0.217 6.68% Gravity::get_new_grav_vector() 11 0.2107 0.2131 0.2146 6.61% Castro::construct_old_gravity() 10 0.1836 0.1901 0.1993 6.13% Gravity::get_old_grav_vector() 10 0.1828 0.1894 0.1986 6.11% FillPatchIterator::Initialize 41 0.155 0.1701 0.1916 5.90% Castro::construct_new_gravity() 10 0.1869 0.1881 0.1894 5.83% Amr::init() 1 0.1764 0.1765 0.1765 5.43% Castro::initialize_do_advance() 10 0.1558 0.1681 0.1733 5.33% Amr::initialInit() 1 0.1606 0.1612 0.1617 4.98% FillPatchIterator::FillFromLevel0() 41 0.1158 0.1261 0.1554 4.78% FillPatchSingleLevel 41 0.1156 0.1259 0.1553 4.78% check_for_negative_density() 10 0.05706 0.09512 0.1343 4.13% Amr::InitializeInit() 1 0.05707 0.09755 0.1322 4.07% Amr::defBaseLevel() 1 0.05706 0.09755 0.1322 4.07% FabArray::ParallelCopy() 41 0.08287 0.09298 0.1233 3.79% Castro::expand_state() 10 0.1015 0.1142 0.1213 3.73% Castro::clean_state() 62 0.1147 0.1171 0.1193 3.67% Castro::initData() 1 0.04112 0.08072 0.1145 3.52% Castro::estTimeStep() 21 0.0333 0.06412 0.1083 3.33% Amr::FinalizeInit() 1 0.02924 0.06362 0.1045 3.22% Castro::do_old_sources() 10 0.09268 0.09574 0.09899 3.05% amrex::Copy() 193 0.06386 0.07834 0.08826 2.72% FabArray::ParallelCopy_finish() 41 0.04092 0.05198 0.08814 2.71% Castro::computeInitialDt() 2 0.002273 0.03692 0.07739 2.38% FabArray::setVal() 143 0.06142 0.06768 0.07436 2.29% Castro::initialize_advance() 10 0.05966 0.06976 0.0738 2.27% Castro::do_new_sources() 10 0.06081 0.06454 0.07063 2.17% Castro::computeTemp() 63 0.0605 0.06456 0.06835 2.10% Castro::normalize_species() 62 0.04524 0.04726 0.0507 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04323 0.04621 0.0492 1.51% Castro::reset_internal_energy(Fab) 1008 0.04294 0.04591 0.04888 1.50% FabArray::ParallelCopy_nowait() 41 0.03504 0.04091 0.04291 1.32% StateDataPhysBCFunct::() 41 0.02964 0.03289 0.03689 1.14% StateData::FillBoundary(geom) 41 0.02953 0.03279 0.03679 1.13% Castro::construct_new_source() 50 0.02873 0.03061 0.03328 1.02% Gravity::interpolate_monopole_grav() 21 0.02688 0.02736 0.02781 0.86% Castro::construct_new_gravity_source() 10 0.02284 0.02461 0.02725 0.84% Castro::post_init() 1 0.02549 0.02617 0.02689 0.83% Amr::writePlotFile() 2 0.02383 0.02437 0.02498 0.77% Castro::finalize_do_advance() 10 0.01365 0.01966 0.02404 0.74% Castro::post_timestep() 10 0.01562 0.01595 0.01662 0.51% FabArray::setDomainBndry() 41 0.007975 0.01133 0.01387 0.43% VisMF::Write(FabArray) 2 0.008477 0.009757 0.01357 0.42% Castro::apply_source_to_state() 20 0.01025 0.01222 0.01337 0.41% FabArray::Saxpy() 20 0.01021 0.01217 0.01332 0.41% Castro::check_for_nan() 20 0.01012 0.01112 0.01184 0.36% MultiFab::contains_nan() 20 0.0101 0.01109 0.01182 0.36% Castro::Castro() 1 0.009572 0.01075 0.01169 0.36% Castro::construct_old_source() 50 0.007029 0.009619 0.01055 0.32% Castro::construct_old_gravity_source() 10 0.006976 0.009546 0.01048 0.32% Castro::computeNewDt() 9 0.008524 0.008533 0.00854 0.26% Castro::initMFs() 1 0.006305 0.006916 0.007548 0.23% Castro::enforce_min_density() 62 0.005575 0.006019 0.006469 0.20% Other 199 0.01995 0.02328 0.0261 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 38 B 65 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6739 KiB 6746 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4535 KiB 4547 KiB 4563 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 236 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 245 KiB 252 KiB 260 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 44 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized