Initializing AMReX (24.12-10-g9643da4522f9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-10-g9643da4522f9) initialized Starting run at 06:19:59 UTC on 2024-12-16. Successfully read inputs file ... Castro git describe: 24.12-7-g0e11b332b AMReX git describe: 24.12-10-g9643da452 Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019934783 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.406251056 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.374511066 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.341835619 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.356526628 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.340279181 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308391216 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.311578672 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.307136486 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310889043 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311049644 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007934759 seconds Ending run at 06:20:02 UTC on 2024-12-16. Run time = 3.565824018 Run time without initialization = 3.382305661 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5650 ... 3.5656 ... 3.5659 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0923 2.2321 2.4290 68.12% check_for_negative_density() 10 0.004971 0.2042 0.3485 9.77% Gravity::make_radial_gravity() 21 0.2936 0.3027 0.3145 8.82% Castro::initData() 1 0.03715 0.07653 0.1036 2.91% amrex::Copy() 193 0.08291 0.09439 0.1009 2.83% Castro::estTimeStep() 21 0.02316 0.05299 0.09119 2.56% FabArray::setVal() 143 0.06727 0.07918 0.08622 2.42% FabArray::ParallelCopy_finish() 41 0.04687 0.05789 0.0795 2.23% Castro::reset_internal_energy(Fab) 1008 0.04362 0.04769 0.05101 1.43% FabArray::ParallelCopy_nowait() 41 0.04494 0.04854 0.05021 1.41% Castro::normalize_species() 62 0.04585 0.04721 0.0496 1.39% FillPatchIterator::Initialize 41 0.03743 0.03973 0.04139 1.16% StateData::FillBoundary(geom) 41 0.0315 0.03523 0.03875 1.09% Castro::construct_new_gravity_source() 10 0.02541 0.02713 0.02917 0.82% Gravity::interpolate_monopole_grav() 21 0.02701 0.02775 0.02861 0.80% Castro::initialize_do_advance() 10 0.02105 0.02167 0.02339 0.66% Castro::computeTemp() 63 0.01712 0.0188 0.01996 0.56% FabArray::Saxpy() 20 0.01536 0.01608 0.01667 0.47% Castro::initMFs() 1 0.008458 0.01076 0.01554 0.44% VisMF::Write(FabArray) 2 0.01049 0.01206 0.01537 0.43% Amr::writePlotFile() 2 0.008929 0.01247 0.01523 0.43% Castro::initialize_advance() 10 0.01035 0.01249 0.01437 0.40% FabArray::setDomainBndry() 41 0.01108 0.01285 0.01432 0.40% MultiFab::contains_nan() 20 0.01122 0.01253 0.01395 0.39% Castro::construct_old_gravity_source() 10 0.01182 0.0123 0.01309 0.37% StateData::define() 4 0.006915 0.008159 0.01078 0.30% Castro::construct_new_source() 50 0.006479 0.007023 0.007487 0.21% Gravity::get_new_grav_vector() 11 0.003951 0.00513 0.006505 0.18% main() 1 0.004396 0.004934 0.005311 0.15% Amr::coarseTimeStep() 10 0.001213 0.00287 0.004507 0.13% Gravity::get_old_grav_vector() 10 0.002183 0.002405 0.002658 0.07% Castro::finalize_do_advance() 10 0.00117 0.001258 0.001522 0.04% AmrLevel::FillPatch() 41 0.0009453 0.001233 0.001511 0.04% Amr::timeStep() 10 0.0001665 0.0002242 0.00039 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002931 0.0003093 0.0003271 0.01% Castro::clean_state() 62 0.0001487 0.0001742 0.0001981 0.01% Castro::do_advance_ctu() 10 0.0001477 0.0001717 0.0001928 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001081 0.0001216 0.0001353 0.00% Castro::Castro() 1 6.613e-05 9.752e-05 0.0001341 0.00% StateDataPhysBCFunct::() 41 9.846e-05 0.0001216 0.0001335 0.00% FabArray::ParallelCopy() 41 9.208e-05 0.0001054 0.0001169 0.00% Castro::do_old_sources() 10 8.015e-05 9.855e-05 0.0001136 0.00% Castro::construct_old_source() 50 7.086e-05 8.88e-05 0.0001092 0.00% FillPatchSingleLevel 41 7.201e-05 7.814e-05 8.955e-05 0.00% Amr::FinalizeInit() 1 5.891e-06 1.563e-05 7.45e-05 0.00% Castro::do_new_sources() 10 5.873e-05 6.494e-05 7.073e-05 0.00% Castro::apply_source_to_state() 20 4.97e-05 6.052e-05 6.688e-05 0.00% Amr::defBaseLevel() 1 4.536e-05 5.783e-05 6.505e-05 0.00% Castro::subcycle_advance_ctu() 10 4.619e-05 5.626e-05 6.332e-05 0.00% Castro::construct_old_gravity() 10 3.721e-05 4.19e-05 5.775e-05 0.00% Castro::advance() 10 4.242e-05 4.714e-05 5.45e-05 0.00% Castro::construct_new_gravity() 10 3.06e-05 3.476e-05 4.433e-05 0.00% Castro::expand_state() 10 2.327e-05 3.404e-05 4.393e-05 0.00% Castro::check_for_nan() 20 2.402e-05 2.795e-05 3.455e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.307e-06 1.258e-05 2.294e-05 0.00% Castro::post_timestep() 10 1.477e-05 1.606e-05 1.77e-05 0.00% Castro::post_init() 1 8.943e-06 1.115e-05 1.531e-05 0.00% Amr::InitializeInit() 1 2.79e-06 4.22e-06 7.084e-06 0.00% Castro::computeInitialDt() 2 4.144e-06 4.572e-06 5.082e-06 0.00% Amr::init() 1 2.372e-06 3.052e-06 4.256e-06 0.00% Amr::initialInit() 1 1.359e-06 2.127e-06 2.991e-06 0.00% Other 265 0.01243 0.01509 0.01758 0.49% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.565 3.566 3.566 100.00% Amr::coarseTimeStep() 10 3.369 3.369 3.369 94.48% Amr::timeStep() 10 3.355 3.357 3.358 94.18% Castro::advance() 10 3.34 3.341 3.342 93.71% Castro::subcycle_advance_ctu() 10 3.252 3.258 3.269 91.67% Castro::do_advance_ctu() 10 3.252 3.258 3.269 91.67% Castro::construct_ctu_hydro_source() 10 2.457 2.459 2.462 69.05% check_for_negative_density() 10 0.004971 0.2042 0.3485 9.77% Gravity::make_radial_gravity() 21 0.3137 0.3224 0.3332 9.34% AmrLevel::FillPatch() 41 0.2272 0.2352 0.2432 6.82% Gravity::get_new_grav_vector() 11 0.2199 0.2232 0.2255 6.32% FillPatchIterator::Initialize 41 0.1844 0.1948 0.205 5.75% Castro::initialize_do_advance() 10 0.1908 0.1947 0.2008 5.63% Castro::construct_old_gravity() 10 0.1874 0.1912 0.1972 5.53% Castro::construct_new_gravity() 10 0.192 0.1948 0.1966 5.51% Gravity::get_old_grav_vector() 10 0.1865 0.1905 0.1966 5.51% Amr::init() 1 0.1828 0.1831 0.1832 5.14% Amr::initialInit() 1 0.1627 0.1629 0.1631 4.57% FillPatchIterator::FillFromLevel0() 41 0.1328 0.1422 0.1565 4.39% FillPatchSingleLevel 41 0.1327 0.1421 0.1563 4.38% Castro::expand_state() 10 0.1275 0.1334 0.1416 3.97% Amr::InitializeInit() 1 0.06331 0.1056 0.1306 3.66% Amr::defBaseLevel() 1 0.0633 0.1056 0.1306 3.66% Castro::clean_state() 62 0.1128 0.1195 0.1259 3.53% FabArray::ParallelCopy() 41 0.09728 0.1066 0.1247 3.50% Castro::do_old_sources() 10 0.1107 0.112 0.1132 3.17% Castro::initData() 1 0.04154 0.08093 0.1082 3.04% amrex::Copy() 193 0.08291 0.09439 0.1009 2.83% Amr::FinalizeInit() 1 0.03237 0.05728 0.09944 2.79% Castro::estTimeStep() 21 0.02316 0.05299 0.09119 2.56% FabArray::setVal() 143 0.06727 0.07918 0.08622 2.42% Castro::initialize_advance() 10 0.06813 0.07882 0.08496 2.38% FabArray::ParallelCopy_finish() 41 0.04687 0.05789 0.0795 2.23% Castro::do_new_sources() 10 0.06493 0.07074 0.07633 2.14% Castro::computeTemp() 63 0.06104 0.0668 0.07118 2.00% Castro::computeInitialDt() 2 0.002363 0.02727 0.06966 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04391 0.048 0.05134 1.44% Castro::reset_internal_energy(Fab) 1008 0.04362 0.04769 0.05101 1.43% FabArray::ParallelCopy_nowait() 41 0.04505 0.04865 0.05032 1.41% Castro::normalize_species() 62 0.04585 0.04721 0.0496 1.39% StateDataPhysBCFunct::() 41 0.03162 0.03535 0.03886 1.09% StateData::FillBoundary(geom) 41 0.0315 0.03523 0.03875 1.09% Castro::construct_new_source() 50 0.0319 0.03415 0.03654 1.02% Castro::post_init() 1 0.02927 0.02949 0.02969 0.83% Castro::construct_new_gravity_source() 10 0.02541 0.02713 0.02917 0.82% Gravity::interpolate_monopole_grav() 21 0.02701 0.02775 0.02861 0.80% Amr::writePlotFile() 2 0.0281 0.02821 0.02844 0.80% Castro::finalize_do_advance() 10 0.01228 0.01857 0.02553 0.72% Castro::Castro() 1 0.01368 0.01617 0.02128 0.60% Castro::apply_source_to_state() 20 0.01542 0.01614 0.01674 0.47% FabArray::Saxpy() 20 0.01536 0.01608 0.01667 0.47% Castro::post_timestep() 10 0.01449 0.0156 0.01657 0.46% Castro::initMFs() 1 0.008458 0.01076 0.01554 0.44% VisMF::Write(FabArray) 2 0.01049 0.01206 0.01537 0.43% FabArray::setDomainBndry() 41 0.01108 0.01285 0.01432 0.40% Castro::check_for_nan() 20 0.01126 0.01256 0.01398 0.39% MultiFab::contains_nan() 20 0.01122 0.01253 0.01395 0.39% Castro::construct_old_source() 50 0.01193 0.01239 0.01318 0.37% Castro::construct_old_gravity_source() 10 0.01182 0.0123 0.01309 0.37% AmrLevel::AmrLevel(dm) 1 0.006924 0.008172 0.0108 0.30% StateData::define() 4 0.006915 0.008159 0.01078 0.30% Other 265 0.02561 0.02916 0.03288 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 39 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8636 KiB 8659 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6756 KiB 6763 KiB 6766 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4564 KiB 4580 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 241 KiB 250 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 20 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 230 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 46 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-10-g9643da4522f9) finalized