Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:37:53 UTC on 2024-12-17. Successfully read inputs file ... Castro git describe: 24.12-7-g0e11b332b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01518287 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.329646215 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335628854 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.310050395 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.306277014 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.351243847 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.330085782 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.288762276 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.288692469 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.289595028 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.287377978 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00885234 seconds Ending run at 06:37:56 UTC on 2024-12-17. Run time = 3.297920582 Run time without initialization = 3.1321762 Average number of zones advanced per microsecond: 0.837 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2968 ... 3.2973 ... 3.2980 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0621 2.1271 2.1743 65.93% Gravity::make_radial_gravity() 21 0.2897 0.2984 0.3138 9.51% check_for_negative_density() 10 0.06593 0.1181 0.1872 5.68% Castro::initData() 1 0.03763 0.07158 0.1022 3.10% Castro::estTimeStep() 21 0.02375 0.05948 0.1004 3.05% amrex::Copy() 193 0.07218 0.08195 0.08889 2.70% FabArray::setVal() 143 0.06537 0.07358 0.07954 2.41% FabArray::ParallelCopy_finish() 41 0.03937 0.04967 0.0604 1.83% Castro::reset_internal_energy(Fab) 1008 0.04242 0.04593 0.04797 1.45% Castro::normalize_species() 62 0.04528 0.04586 0.04701 1.43% FabArray::ParallelCopy_nowait() 41 0.03744 0.04178 0.04384 1.33% StateData::FillBoundary(geom) 41 0.02974 0.03328 0.03741 1.13% FillPatchIterator::Initialize 41 0.02853 0.03369 0.03574 1.08% Castro::construct_new_gravity_source() 10 0.02377 0.02576 0.02856 0.87% Gravity::interpolate_monopole_grav() 21 0.02695 0.02727 0.02758 0.84% Castro::computeTemp() 63 0.01736 0.01835 0.01885 0.57% Castro::initialize_do_advance() 10 0.01273 0.01726 0.01836 0.56% Castro::initialize_advance() 10 0.009936 0.01316 0.01545 0.47% FabArray::Saxpy() 20 0.01222 0.01307 0.01458 0.44% MultiFab::contains_nan() 20 0.01067 0.01189 0.01319 0.40% VisMF::Write(FabArray) 2 0.009414 0.01004 0.01313 0.40% Amr::writePlotFile() 2 0.007882 0.01132 0.01206 0.37% FabArray::setDomainBndry() 41 0.007233 0.01062 0.01169 0.35% Castro::construct_old_gravity_source() 10 0.008098 0.01011 0.01071 0.32% Castro::initMFs() 1 0.006536 0.006865 0.008409 0.25% Castro::construct_new_source() 50 0.005797 0.006216 0.006484 0.20% main() 1 0.004026 0.004469 0.005201 0.16% Gravity::get_new_grav_vector() 11 0.00288 0.003588 0.004035 0.12% Amr::coarseTimeStep() 10 0.001342 0.002247 0.002959 0.09% Gravity::get_old_grav_vector() 10 0.001637 0.00213 0.002433 0.07% AmrLevel::FillPatch() 41 0.0009497 0.00108 0.001233 0.04% Castro::finalize_do_advance() 10 0.0004985 0.001008 0.001192 0.04% Amr::timeStep() 10 0.0001736 0.0002253 0.0003765 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002904 0.0003016 0.0003234 0.01% Castro::do_advance_ctu() 10 0.0001529 0.0001718 0.0002139 0.01% Castro::clean_state() 62 0.0001484 0.0001608 0.0001795 0.01% StateDataPhysBCFunct::() 41 9.52e-05 0.0001077 0.0001304 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001001 0.000109 0.0001198 0.00% Castro::Castro() 1 5.326e-05 8.471e-05 0.0001088 0.00% Castro::do_old_sources() 10 8.684e-05 9.527e-05 0.0001077 0.00% Castro::construct_old_source() 50 6.868e-05 7.988e-05 0.0001055 0.00% FabArray::ParallelCopy() 41 9.049e-05 9.583e-05 0.0001006 0.00% Amr::FinalizeInit() 1 3.84e-06 1.682e-05 0.0001002 0.00% FillPatchSingleLevel 41 6.368e-05 6.991e-05 7.723e-05 0.00% Castro::do_new_sources() 10 6.301e-05 6.771e-05 7.298e-05 0.00% Castro::advance() 10 3.957e-05 5.038e-05 6.256e-05 0.00% Amr::defBaseLevel() 1 2.912e-05 4.838e-05 5.821e-05 0.00% Castro::apply_source_to_state() 20 4.038e-05 4.85e-05 5.756e-05 0.00% Castro::subcycle_advance_ctu() 10 4.635e-05 5.04e-05 5.634e-05 0.00% Castro::construct_old_gravity() 10 3.689e-05 4.291e-05 4.704e-05 0.00% Castro::construct_new_gravity() 10 3.281e-05 4.069e-05 4.7e-05 0.00% Castro::expand_state() 10 2.214e-05 2.722e-05 3.784e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.559e-05 2.77e-05 0.00% Castro::post_timestep() 10 1.368e-05 1.605e-05 1.802e-05 0.00% Castro::post_init() 1 8.399e-06 1.09e-05 1.487e-05 0.00% Castro::computeNewDt() 9 8.898e-06 1.082e-05 1.256e-05 0.00% Amr::initialInit() 1 1.574e-06 2.651e-06 8.524e-06 0.00% Amr::InitializeInit() 1 3.304e-06 3.945e-06 5.989e-06 0.00% Castro::computeInitialDt() 2 3.514e-06 4.013e-06 4.475e-06 0.00% Amr::init() 1 1.979e-06 2.541e-06 2.884e-06 0.00% Other 261 0.01618 0.01842 0.02015 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.297 3.297 3.298 100.00% Amr::coarseTimeStep() 10 3.118 3.118 3.118 94.55% Amr::timeStep() 10 3.105 3.106 3.107 94.20% Castro::advance() 10 3.089 3.09 3.09 93.71% Castro::subcycle_advance_ctu() 10 3.006 3.011 3.017 91.49% Castro::do_advance_ctu() 10 3.006 3.011 3.017 91.49% Castro::construct_ctu_hydro_source() 10 2.262 2.267 2.271 68.85% Gravity::make_radial_gravity() 21 0.3057 0.3147 0.3285 9.96% AmrLevel::FillPatch() 41 0.1885 0.2024 0.2146 6.51% Gravity::get_new_grav_vector() 11 0.2093 0.2101 0.2107 6.39% Castro::construct_old_gravity() 10 0.1826 0.189 0.2011 6.10% Gravity::get_old_grav_vector() 10 0.182 0.1884 0.2004 6.08% Castro::construct_new_gravity() 10 0.1864 0.1869 0.1876 5.69% check_for_negative_density() 10 0.06593 0.1181 0.1872 5.68% FillPatchIterator::Initialize 41 0.159 0.1695 0.1804 5.47% Castro::initialize_do_advance() 10 0.1501 0.1658 0.1732 5.25% Amr::init() 1 0.1652 0.1654 0.1654 5.01% Amr::initialInit() 1 0.1498 0.15 0.1501 4.55% FillPatchIterator::FillFromLevel0() 41 0.1153 0.1252 0.1335 4.05% FillPatchSingleLevel 41 0.1152 0.1251 0.1334 4.05% Amr::InitializeInit() 1 0.05836 0.09245 0.1229 3.73% Amr::defBaseLevel() 1 0.05836 0.09244 0.1229 3.73% Castro::expand_state() 10 0.1003 0.1109 0.1187 3.60% Castro::clean_state() 62 0.1126 0.1159 0.1184 3.59% Castro::initData() 1 0.04144 0.0754 0.1061 3.22% Castro::do_old_sources() 10 0.09624 0.09965 0.1019 3.09% Castro::estTimeStep() 21 0.02375 0.05948 0.1004 3.05% FabArray::ParallelCopy() 41 0.08223 0.09164 0.09808 2.97% Amr::FinalizeInit() 1 0.02709 0.05752 0.09169 2.78% amrex::Copy() 193 0.07218 0.08195 0.08889 2.70% Castro::initialize_advance() 10 0.06915 0.07521 0.08018 2.43% FabArray::setVal() 143 0.06537 0.07358 0.07954 2.41% Castro::do_new_sources() 10 0.06119 0.06728 0.0719 2.18% Castro::computeTemp() 63 0.06007 0.06458 0.06673 2.02% Castro::computeInitialDt() 2 0.002126 0.03254 0.06665 2.02% FabArray::ParallelCopy_finish() 41 0.03937 0.04967 0.0604 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04271 0.04623 0.04828 1.46% Castro::reset_internal_energy(Fab) 1008 0.04242 0.04593 0.04797 1.45% Castro::normalize_species() 62 0.04528 0.04586 0.04701 1.43% FabArray::ParallelCopy_nowait() 41 0.03754 0.04187 0.04392 1.33% StateDataPhysBCFunct::() 41 0.02987 0.03338 0.03752 1.14% StateData::FillBoundary(geom) 41 0.02974 0.03328 0.03741 1.13% Castro::construct_new_source() 50 0.02966 0.03198 0.03505 1.06% Castro::construct_new_gravity_source() 10 0.02377 0.02576 0.02856 0.87% Gravity::interpolate_monopole_grav() 21 0.02695 0.02727 0.02758 0.84% Castro::finalize_do_advance() 10 0.01373 0.019 0.0259 0.79% Castro::post_init() 1 0.02435 0.02447 0.02457 0.75% Amr::writePlotFile() 2 0.02428 0.02435 0.02446 0.74% Castro::post_timestep() 10 0.01524 0.01574 0.01617 0.49% Castro::apply_source_to_state() 20 0.01226 0.01312 0.01463 0.44% FabArray::Saxpy() 20 0.01222 0.01307 0.01458 0.44% Castro::check_for_nan() 20 0.01069 0.01192 0.01321 0.40% MultiFab::contains_nan() 20 0.01067 0.01189 0.01319 0.40% VisMF::Write(FabArray) 2 0.009414 0.01004 0.01313 0.40% Castro::Castro() 1 0.01052 0.01109 0.01191 0.36% FabArray::setDomainBndry() 41 0.007233 0.01062 0.01169 0.35% Castro::construct_old_source() 50 0.008172 0.01019 0.01079 0.33% Castro::construct_old_gravity_source() 10 0.008098 0.01011 0.01071 0.32% Castro::computeNewDt() 9 0.008951 0.008967 0.008982 0.27% Castro::initMFs() 1 0.006536 0.006865 0.008409 0.25% Other 261 0.02622 0.02931 0.03211 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6775 KiB 6776 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4561 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 230 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 243 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 73 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized