Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 18:56:55 UTC on 2024-12-18. Successfully read inputs file ... Castro git describe: 24.12-23-g3cde3f4b4 AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014687933 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342629735 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34290019 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346213428 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.347037853 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.407860635 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.341356244 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.35010477 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.345061849 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.347332987 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.34300606 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011812064 seconds Ending run at 18:56:59 UTC on 2024-12-18. Run time = 3.699522105 Run time without initialization = 3.533261318 Average number of zones advanced per microsecond: 0.742 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.6983 ... 3.6991 ... 3.6996 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1783 2.3031 2.4707 66.78% Gravity::make_radial_gravity() 21 0.3004 0.3127 0.3293 8.90% check_for_negative_density() 10 0.03012 0.1983 0.3229 8.73% amrex::Copy() 193 0.1078 0.1173 0.1268 3.43% Castro::initData() 1 0.03724 0.0707 0.1031 2.79% Castro::estTimeStep() 21 0.02146 0.06008 0.09491 2.57% FabArray::setVal() 143 0.0872 0.09065 0.09269 2.51% FabArray::ParallelCopy_nowait() 41 0.05602 0.058 0.05949 1.61% FabArray::ParallelCopy_finish() 41 0.04598 0.0502 0.05605 1.51% FillPatchIterator::Initialize 41 0.04236 0.04816 0.05579 1.51% Castro::reset_internal_energy(Fab) 1008 0.04331 0.04783 0.05038 1.36% Castro::normalize_species() 62 0.04582 0.04723 0.04864 1.31% StateData::FillBoundary(geom) 41 0.03526 0.03753 0.04034 1.09% Castro::construct_new_gravity_source() 10 0.02874 0.03034 0.03357 0.91% Gravity::interpolate_monopole_grav() 21 0.02722 0.02832 0.02897 0.78% Castro::initialize_do_advance() 10 0.0192 0.0249 0.02857 0.77% MultiFab::contains_nan() 20 0.01242 0.0148 0.02135 0.58% Castro::computeTemp() 63 0.01786 0.01913 0.01976 0.53% FabArray::Saxpy() 20 0.01596 0.01772 0.01911 0.52% FabArray::setDomainBndry() 41 0.01475 0.01586 0.01715 0.46% Castro::initialize_advance() 10 0.01335 0.01424 0.0147 0.40% Castro::construct_old_gravity_source() 10 0.01261 0.01377 0.01468 0.40% VisMF::Write(FabArray) 2 0.009798 0.011 0.01375 0.37% Amr::writePlotFile() 2 0.008711 0.01145 0.0126 0.34% Castro::construct_new_source() 50 0.007231 0.007966 0.008544 0.23% Castro::enforce_min_density() 62 0.006105 0.006739 0.007623 0.21% main() 1 0.006232 0.007086 0.007523 0.20% Gravity::get_new_grav_vector() 11 0.003767 0.00479 0.005474 0.15% Gravity::get_old_grav_vector() 10 0.002432 0.003267 0.003967 0.11% Amr::coarseTimeStep() 10 0.001015 0.002234 0.003178 0.09% AmrLevel::FillPatch() 41 0.001267 0.001405 0.001622 0.04% Castro::finalize_do_advance() 10 0.001173 0.001236 0.001328 0.04% Amr::timeStep() 10 0.0001824 0.0002485 0.0004497 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002929 0.0003158 0.0003517 0.01% Castro::do_advance_ctu() 10 0.0001769 0.0002083 0.0002562 0.01% Castro::clean_state() 62 0.0001585 0.0001767 0.0002215 0.01% Castro::do_old_sources() 10 0.0001065 0.0001227 0.0001613 0.00% FillPatchIterator::FillFromLevel0() 41 0.000119 0.0001339 0.0001544 0.00% StateDataPhysBCFunct::() 41 0.0001164 0.0001303 0.000147 0.00% FabArray::ParallelCopy() 41 0.000108 0.0001218 0.0001394 0.00% Castro::construct_old_source() 50 8.607e-05 0.000108 0.0001312 0.00% Castro::Castro() 1 5.078e-05 9.404e-05 0.0001206 0.00% Castro::do_new_sources() 10 7.012e-05 8.142e-05 0.0001044 0.00% Castro::subcycle_advance_ctu() 10 5.082e-05 7.301e-05 9.886e-05 0.00% FillPatchSingleLevel 41 7.487e-05 8.294e-05 9.53e-05 0.00% Castro::apply_source_to_state() 20 6.104e-05 6.911e-05 9.107e-05 0.00% Amr::FinalizeInit() 1 4.325e-06 1.568e-05 8.79e-05 0.00% Castro::advance() 10 5.018e-05 5.998e-05 7.625e-05 0.00% Castro::construct_old_gravity() 10 4.322e-05 5.387e-05 7.46e-05 0.00% Castro::construct_new_gravity() 10 3.608e-05 4.382e-05 6.238e-05 0.00% Amr::defBaseLevel() 1 2.631e-05 4.585e-05 5.855e-05 0.00% Castro::expand_state() 10 2.857e-05 3.524e-05 5.179e-05 0.00% Castro::check_for_nan() 20 2.65e-05 3.125e-05 4.495e-05 0.00% Castro::post_timestep() 10 1.577e-05 1.982e-05 2.485e-05 0.00% Castro::post_init() 1 9.912e-06 1.142e-05 1.535e-05 0.00% Castro::computeNewDt() 9 1.012e-05 1.116e-05 1.18e-05 0.00% Amr::InitializeInit() 1 2.683e-06 3.214e-06 5.432e-06 0.00% Castro::computeInitialDt() 2 3.092e-06 3.674e-06 4.269e-06 0.00% Amr::init() 1 1.893e-06 2.635e-06 3.934e-06 0.00% Amr::initialInit() 1 1.43e-06 1.817e-06 2.446e-06 0.00% Other 200 0.0169 0.01884 0.02078 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.698 3.699 3.7 100.00% Amr::coarseTimeStep() 10 3.514 3.514 3.514 94.98% Amr::timeStep() 10 3.501 3.502 3.503 94.69% Castro::advance() 10 3.485 3.486 3.486 94.23% Castro::subcycle_advance_ctu() 10 3.388 3.392 3.398 91.85% Castro::do_advance_ctu() 10 3.388 3.392 3.398 91.84% Castro::construct_ctu_hydro_source() 10 2.521 2.524 2.527 68.30% Gravity::make_radial_gravity() 21 0.3245 0.3379 0.3535 9.56% check_for_negative_density() 10 0.03012 0.1983 0.3229 8.73% AmrLevel::FillPatch() 41 0.2433 0.2618 0.2789 7.54% Castro::initialize_do_advance() 10 0.202 0.2147 0.227 6.14% Gravity::get_new_grav_vector() 11 0.223 0.2252 0.2261 6.11% FillPatchIterator::Initialize 41 0.1993 0.2103 0.2239 6.05% Castro::construct_old_gravity() 10 0.2011 0.2111 0.2216 5.99% Gravity::get_old_grav_vector() 10 0.1999 0.2101 0.2209 5.97% Castro::construct_new_gravity() 10 0.2005 0.2019 0.2031 5.49% Amr::init() 1 0.1657 0.1659 0.1659 4.48% Castro::expand_state() 10 0.1342 0.1474 0.1628 4.40% FillPatchIterator::FillFromLevel0() 41 0.1398 0.1463 0.1533 4.14% FillPatchSingleLevel 41 0.1397 0.1462 0.1532 4.14% Amr::initialInit() 1 0.1509 0.1511 0.1512 4.09% Castro::do_old_sources() 10 0.1226 0.1257 0.1268 3.43% amrex::Copy() 193 0.1078 0.1173 0.1268 3.43% Castro::clean_state() 62 0.1159 0.1206 0.1253 3.39% Amr::InitializeInit() 1 0.0586 0.09151 0.124 3.35% Amr::defBaseLevel() 1 0.05859 0.09151 0.124 3.35% FabArray::ParallelCopy() 41 0.1023 0.1084 0.1151 3.11% Castro::initData() 1 0.04062 0.07461 0.107 2.89% Castro::estTimeStep() 21 0.02146 0.06008 0.09491 2.57% Castro::initialize_advance() 10 0.08323 0.08932 0.09286 2.51% FabArray::setVal() 143 0.0872 0.09065 0.09269 2.51% Amr::FinalizeInit() 1 0.02719 0.05955 0.09249 2.50% Castro::do_new_sources() 10 0.07257 0.07558 0.07993 2.16% Castro::computeTemp() 63 0.06148 0.06728 0.07049 1.91% Castro::computeInitialDt() 2 0.002134 0.03456 0.06748 1.82% FabArray::ParallelCopy_nowait() 41 0.05614 0.05811 0.05962 1.61% FabArray::ParallelCopy_finish() 41 0.04598 0.0502 0.05605 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04362 0.04815 0.05073 1.37% Castro::reset_internal_energy(Fab) 1008 0.04331 0.04783 0.05038 1.36% Castro::normalize_species() 62 0.04582 0.04723 0.04864 1.31% Castro::construct_new_source() 50 0.03598 0.03831 0.04212 1.14% StateDataPhysBCFunct::() 41 0.03539 0.03767 0.04048 1.09% StateData::FillBoundary(geom) 41 0.03526 0.03753 0.04034 1.09% Castro::construct_new_gravity_source() 10 0.02874 0.03034 0.03357 0.91% Gravity::interpolate_monopole_grav() 21 0.02722 0.02832 0.02897 0.78% Amr::writePlotFile() 2 0.02664 0.02673 0.02692 0.73% Castro::post_init() 1 0.02404 0.02438 0.02454 0.66% Castro::finalize_do_advance() 10 0.01184 0.01806 0.02249 0.61% Castro::check_for_nan() 20 0.01245 0.01483 0.0214 0.58% MultiFab::contains_nan() 20 0.01242 0.0148 0.02135 0.58% Castro::apply_source_to_state() 20 0.01602 0.01779 0.01917 0.52% FabArray::Saxpy() 20 0.01596 0.01772 0.01911 0.52% FabArray::setDomainBndry() 41 0.01475 0.01586 0.01715 0.46% Castro::post_timestep() 10 0.01539 0.01607 0.01692 0.46% Castro::construct_old_source() 50 0.01271 0.01387 0.01482 0.40% Castro::construct_old_gravity_source() 10 0.01261 0.01377 0.01468 0.40% VisMF::Write(FabArray) 2 0.009798 0.011 0.01375 0.37% Castro::Castro() 1 0.01066 0.01115 0.01176 0.32% Castro::computeNewDt() 9 0.008694 0.008715 0.008731 0.24% Castro::enforce_min_density() 62 0.006105 0.006739 0.007623 0.21% Other 200 0.02805 0.03075 0.03401 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6806 KiB 6812 KiB 6813 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4580 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 247 KiB 269 KiB 290 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2823 KiB 2826 KiB 2827 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 232 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 45 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized