Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:44 UTC on 2024-12-18. Successfully read inputs file ... Castro git describe: 24.12-7-g0e11b332b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019952045 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339615906 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.308707556 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.306153237 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321242612 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.351731219 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.293575162 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310054055 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297001133 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295381566 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296987741 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009085816 seconds Ending run at 06:19:47 UTC on 2024-12-18. Run time = 3.325483167 Run time without initialization = 3.13523187 Average number of zones advanced per microsecond: 0.836 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.3244 ... 3.3248 ... 3.3256 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0464 2.1018 2.1496 64.64% Gravity::make_radial_gravity() 21 0.3103 0.3208 0.3313 9.96% check_for_negative_density() 10 0.06269 0.116 0.1726 5.19% Castro::estTimeStep() 21 0.04054 0.0726 0.1237 3.72% Castro::initData() 1 0.03694 0.07971 0.1102 3.31% FabArray::ParallelCopy_finish() 41 0.06969 0.07962 0.1055 3.17% amrex::Copy() 193 0.07136 0.07623 0.0841 2.53% FabArray::setVal() 143 0.05913 0.06559 0.07615 2.29% Castro::reset_internal_energy(Fab) 1008 0.04141 0.04538 0.04832 1.45% Castro::normalize_species() 62 0.04615 0.04734 0.04811 1.45% FabArray::ParallelCopy_nowait() 41 0.03622 0.03972 0.04218 1.27% StateData::FillBoundary(geom) 41 0.03014 0.03291 0.0368 1.11% FillPatchIterator::Initialize 41 0.0281 0.03219 0.03453 1.04% Gravity::interpolate_monopole_grav() 21 0.02731 0.02854 0.03353 1.01% Castro::construct_new_gravity_source() 10 0.02265 0.02478 0.02802 0.84% Castro::computeTemp() 63 0.0174 0.01829 0.01943 0.58% Castro::initialize_do_advance() 10 0.01259 0.01666 0.0184 0.55% Amr::writePlotFile() 2 0.01102 0.01494 0.01693 0.51% VisMF::Write(FabArray) 2 0.009349 0.01062 0.01585 0.48% FabArray::Saxpy() 20 0.01005 0.01187 0.01297 0.39% Castro::initialize_advance() 10 0.005859 0.01027 0.01277 0.38% MultiFab::contains_nan() 20 0.0104 0.01154 0.01251 0.38% FabArray::setDomainBndry() 41 0.007786 0.009415 0.01113 0.33% Castro::initMFs() 1 0.006377 0.00757 0.01014 0.31% Castro::construct_old_gravity_source() 10 0.007343 0.009024 0.009676 0.29% Castro::construct_new_source() 50 0.005188 0.005726 0.006059 0.18% main() 1 0.003975 0.004371 0.005111 0.15% Gravity::get_new_grav_vector() 11 0.003187 0.003555 0.003945 0.12% Amr::coarseTimeStep() 10 0.001735 0.002567 0.003289 0.10% Gravity::get_old_grav_vector() 10 0.001741 0.001954 0.002213 0.07% Castro::finalize_do_advance() 10 0.0004804 0.001048 0.00128 0.04% AmrLevel::FillPatch() 41 0.0008899 0.0009347 0.001032 0.03% Castro::Castro() 1 4.96e-05 0.0001065 0.0004135 0.01% Amr::timeStep() 10 0.0001958 0.0002289 0.0003793 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002907 0.0003094 0.0003301 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001095 0.0001263 0.0002043 0.01% StateDataPhysBCFunct::() 41 0.0001029 0.0001198 0.0001898 0.01% Castro::do_advance_ctu() 10 0.0001412 0.0001628 0.0001891 0.01% Castro::clean_state() 62 0.0001395 0.0001541 0.0001666 0.01% Castro::do_old_sources() 10 7.94e-05 9.363e-05 0.0001075 0.00% FabArray::ParallelCopy() 41 8.609e-05 9.33e-05 9.86e-05 0.00% Amr::FinalizeInit() 1 6.488e-06 2.829e-05 9.331e-05 0.00% Castro::construct_old_source() 50 5.584e-05 7.449e-05 8.96e-05 0.00% FillPatchSingleLevel 41 6.244e-05 6.623e-05 7.198e-05 0.00% Castro::do_new_sources() 10 5.292e-05 6.16e-05 6.923e-05 0.00% Castro::advance() 10 3.761e-05 4.751e-05 6.05e-05 0.00% Castro::apply_source_to_state() 20 4.454e-05 4.879e-05 5.44e-05 0.00% Amr::defBaseLevel() 1 2.991e-05 3.796e-05 5.413e-05 0.00% Castro::subcycle_advance_ctu() 10 4.286e-05 4.873e-05 5.326e-05 0.00% Castro::construct_old_gravity() 10 3.469e-05 4.119e-05 4.577e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.069e-05 2.293e-05 4.406e-05 0.00% Castro::construct_new_gravity() 10 3.359e-05 3.798e-05 4.193e-05 0.00% Castro::expand_state() 10 2.13e-05 2.501e-05 3.132e-05 0.00% Castro::check_for_nan() 20 2.349e-05 2.594e-05 3.079e-05 0.00% Castro::post_init() 1 8.232e-06 1.279e-05 2.268e-05 0.00% Castro::post_timestep() 10 1.421e-05 1.713e-05 1.918e-05 0.00% Castro::computeNewDt() 9 9.173e-06 1.055e-05 1.164e-05 0.00% Amr::InitializeInit() 1 2.355e-06 3.554e-06 6.795e-06 0.00% Castro::computeInitialDt() 2 3.241e-06 4.109e-06 4.981e-06 0.00% Amr::init() 1 2.028e-06 2.332e-06 2.932e-06 0.00% Amr::initialInit() 1 1.359e-06 1.87e-06 2.299e-06 0.00% Other 260 0.01568 0.01919 0.0237 0.71% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.324 3.325 3.326 100.00% Amr::coarseTimeStep() 10 3.121 3.121 3.121 93.85% Amr::timeStep() 10 3.108 3.108 3.109 93.49% Castro::advance() 10 3.092 3.092 3.093 93.02% Castro::subcycle_advance_ctu() 10 3.014 3.021 3.033 91.20% Castro::do_advance_ctu() 10 3.014 3.021 3.033 91.20% Castro::construct_ctu_hydro_source() 10 2.234 2.239 2.243 67.45% Gravity::make_radial_gravity() 21 0.3267 0.3357 0.345 10.37% Gravity::get_new_grav_vector() 11 0.2326 0.2342 0.2384 7.17% AmrLevel::FillPatch() 41 0.2026 0.2252 0.2364 7.11% FillPatchIterator::Initialize 41 0.1758 0.1944 0.2083 6.26% Castro::construct_old_gravity() 10 0.1876 0.1957 0.2035 6.12% Gravity::get_old_grav_vector() 10 0.187 0.195 0.2029 6.10% Castro::construct_new_gravity() 10 0.1966 0.1986 0.2024 6.09% Castro::initialize_do_advance() 10 0.1646 0.1807 0.1903 5.72% Amr::init() 1 0.1897 0.1898 0.1899 5.71% check_for_negative_density() 10 0.06269 0.116 0.1726 5.19% FillPatchIterator::FillFromLevel0() 41 0.1387 0.1528 0.1724 5.18% FillPatchSingleLevel 41 0.1386 0.1526 0.1723 5.18% Amr::initialInit() 1 0.1696 0.1709 0.1717 5.16% FabArray::ParallelCopy() 41 0.1082 0.1195 0.1419 4.27% Castro::expand_state() 10 0.1103 0.1266 0.1365 4.10% Amr::InitializeInit() 1 0.05688 0.1016 0.1311 3.94% Amr::defBaseLevel() 1 0.05688 0.1016 0.1311 3.94% Castro::estTimeStep() 21 0.04054 0.0726 0.1237 3.72% Castro::clean_state() 62 0.112 0.1166 0.1204 3.62% Amr::FinalizeInit() 1 0.03998 0.06932 0.1144 3.44% Castro::initData() 1 0.04021 0.08391 0.1136 3.42% FabArray::ParallelCopy_finish() 41 0.06969 0.07962 0.1055 3.17% Castro::do_old_sources() 10 0.09123 0.09446 0.09732 2.93% amrex::Copy() 193 0.07136 0.07623 0.0841 2.53% Castro::computeInitialDt() 2 0.002702 0.03216 0.07692 2.31% FabArray::setVal() 143 0.05913 0.06559 0.07615 2.29% Castro::initialize_advance() 10 0.05518 0.06813 0.07529 2.26% Castro::do_new_sources() 10 0.05841 0.06367 0.07303 2.20% Castro::computeTemp() 63 0.05912 0.06398 0.06807 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04172 0.04569 0.04864 1.46% Castro::reset_internal_energy(Fab) 1008 0.04141 0.04538 0.04832 1.45% Castro::normalize_species() 62 0.04615 0.04734 0.04811 1.45% FabArray::ParallelCopy_nowait() 41 0.03634 0.03982 0.04227 1.27% Castro::finalize_do_advance() 10 0.02068 0.03284 0.04015 1.21% Castro::post_init() 1 0.03599 0.03689 0.03764 1.13% StateDataPhysBCFunct::() 41 0.03026 0.03303 0.03699 1.11% StateData::FillBoundary(geom) 41 0.03014 0.03291 0.0368 1.11% Castro::construct_new_source() 50 0.0284 0.03051 0.0336 1.01% Gravity::interpolate_monopole_grav() 21 0.02731 0.02854 0.03353 1.01% Amr::writePlotFile() 2 0.02724 0.02808 0.02933 0.88% Castro::construct_new_gravity_source() 10 0.02265 0.02478 0.02802 0.84% Castro::post_timestep() 10 0.01538 0.01578 0.01637 0.49% VisMF::Write(FabArray) 2 0.009349 0.01062 0.01585 0.48% Castro::Castro() 1 0.009919 0.01122 0.01411 0.42% Castro::apply_source_to_state() 20 0.0101 0.01192 0.01302 0.39% FabArray::Saxpy() 20 0.01005 0.01187 0.01297 0.39% Castro::check_for_nan() 20 0.01042 0.01157 0.01254 0.38% MultiFab::contains_nan() 20 0.0104 0.01154 0.01251 0.38% FabArray::setDomainBndry() 41 0.007786 0.009415 0.01113 0.33% Castro::initMFs() 1 0.006377 0.00757 0.01014 0.31% Castro::construct_old_source() 50 0.007399 0.009098 0.009759 0.29% Castro::construct_old_gravity_source() 10 0.007343 0.009024 0.009676 0.29% Castro::computeNewDt() 9 0.008646 0.008661 0.008673 0.26% AmrLevel::AmrLevel(dm) 1 0.005349 0.006277 0.008135 0.24% Other 260 0.02036 0.0247 0.03112 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 38 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8666 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6722 KiB 6725 KiB 6726 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4527 KiB 4538 KiB 4552 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 253 KiB 269 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2785 KiB 2789 KiB 2790 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 250 KiB 257 KiB 264 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 55 KiB 68 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 89 KiB 90 KiB 92 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized