Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:04 UTC on 2024-12-20. Successfully read inputs file ... Castro git describe: 24.12-7-g0e11b332b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013981609 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337608584 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.311848691 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.306987166 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.330690718 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371253984 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300652601 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284958516 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.285418566 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.285018611 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.285228715 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007596591 seconds Ending run at 06:19:07 UTC on 2024-12-20. Run time = 3.28445418 Run time without initialization = 3.112382834 Average number of zones advanced per microsecond: 0.842 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2838 ... 3.2841 ... 3.2845 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0280 2.1032 2.2006 67.00% Gravity::make_radial_gravity() 21 0.2953 0.3028 0.3206 9.76% check_for_negative_density() 10 0.03254 0.133 0.2132 6.49% Castro::initData() 1 0.0376 0.07226 0.1097 3.34% Castro::estTimeStep() 21 0.03206 0.06725 0.1038 3.16% FabArray::ParallelCopy_finish() 41 0.04076 0.05329 0.09606 2.92% amrex::Copy() 193 0.0619 0.07935 0.08584 2.61% FabArray::setVal() 143 0.0532 0.06696 0.07466 2.27% Castro::normalize_species() 62 0.04624 0.04937 0.05091 1.55% Castro::reset_internal_energy(Fab) 1008 0.04345 0.0472 0.04923 1.50% FabArray::ParallelCopy_nowait() 41 0.03374 0.04033 0.04324 1.32% StateData::FillBoundary(geom) 41 0.02958 0.03192 0.03479 1.06% FillPatchIterator::Initialize 41 0.02684 0.03214 0.03477 1.06% Gravity::interpolate_monopole_grav() 21 0.02706 0.02737 0.02803 0.85% Castro::construct_new_gravity_source() 10 0.02255 0.02425 0.02666 0.81% Castro::computeTemp() 63 0.01683 0.01854 0.01948 0.59% Castro::initialize_do_advance() 10 0.01184 0.01628 0.01728 0.53% FabArray::Saxpy() 20 0.01014 0.01237 0.01342 0.41% Castro::initialize_advance() 10 0.005303 0.01031 0.01314 0.40% MultiFab::contains_nan() 20 0.01014 0.01105 0.01195 0.36% Amr::writePlotFile() 2 0.007364 0.00984 0.01183 0.36% VisMF::Write(FabArray) 2 0.008783 0.009401 0.01164 0.35% FabArray::setDomainBndry() 41 0.007328 0.009771 0.01141 0.35% Castro::construct_old_gravity_source() 10 0.006899 0.009312 0.009986 0.30% Castro::initMFs() 1 0.006241 0.006741 0.008026 0.24% Castro::construct_new_source() 50 0.0053 0.006035 0.00626 0.19% main() 1 0.003933 0.004261 0.004637 0.14% Amr::coarseTimeStep() 10 0.001411 0.002413 0.003803 0.12% Gravity::get_new_grav_vector() 11 0.002726 0.003414 0.003676 0.11% Gravity::get_old_grav_vector() 10 0.001565 0.002103 0.002813 0.09% Castro::finalize_do_advance() 10 0.0004961 0.0009893 0.001104 0.03% AmrLevel::FillPatch() 41 0.0007787 0.0009041 0.001021 0.03% Amr::timeStep() 10 0.0001547 0.0002247 0.0003999 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002846 0.0002944 0.0003062 0.01% Castro::do_advance_ctu() 10 0.0001343 0.0001561 0.000176 0.01% Castro::clean_state() 62 0.0001339 0.0001517 0.0001584 0.00% FillPatchIterator::FillFromLevel0() 41 8.941e-05 0.0001029 0.000112 0.00% Castro::do_old_sources() 10 6.287e-05 9.268e-05 0.0001113 0.00% StateDataPhysBCFunct::() 41 9.113e-05 0.0001007 0.0001104 0.00% FabArray::ParallelCopy() 41 8.275e-05 9.352e-05 0.0001056 0.00% Amr::FinalizeInit() 1 3.697e-06 1.602e-05 9.761e-05 0.00% Castro::construct_old_source() 50 5.159e-05 7.572e-05 9.051e-05 0.00% Castro::Castro() 1 4.402e-05 7.122e-05 8.514e-05 0.00% FillPatchSingleLevel 41 5.637e-05 6.378e-05 7.039e-05 0.00% Castro::do_new_sources() 10 4.765e-05 5.732e-05 6.332e-05 0.00% Castro::apply_source_to_state() 20 3.471e-05 5.052e-05 5.992e-05 0.00% Castro::subcycle_advance_ctu() 10 3.919e-05 4.738e-05 5.238e-05 0.00% Amr::defBaseLevel() 1 3.246e-05 3.942e-05 4.985e-05 0.00% Castro::advance() 10 3.53e-05 4.379e-05 4.974e-05 0.00% Castro::construct_old_gravity() 10 3.306e-05 3.944e-05 4.464e-05 0.00% Castro::construct_new_gravity() 10 3.1e-05 3.553e-05 4.28e-05 0.00% Castro::expand_state() 10 2.319e-05 2.654e-05 3.117e-05 0.00% Castro::check_for_nan() 20 2.283e-05 2.38e-05 2.55e-05 0.00% Castro::post_timestep() 10 1.339e-05 1.565e-05 2.266e-05 0.00% Castro::post_init() 1 8.273e-06 9.811e-06 1.403e-05 0.00% Castro::computeNewDt() 9 8.705e-06 9.939e-06 1.135e-05 0.00% Amr::InitializeInit() 1 2.504e-06 3.463e-06 5.943e-06 0.00% Castro::computeInitialDt() 2 3.073e-06 3.638e-06 4.589e-06 0.00% Amr::init() 1 1.996e-06 2.315e-06 2.84e-06 0.00% Amr::initialInit() 1 1.19e-06 1.614e-06 2.042e-06 0.00% Other 261 0.01577 0.01787 0.01942 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.284 3.284 3.284 100.00% Amr::coarseTimeStep() 10 3.1 3.1 3.1 94.39% Amr::timeStep() 10 3.086 3.088 3.089 94.04% Castro::advance() 10 3.07 3.071 3.072 93.52% Castro::subcycle_advance_ctu() 10 2.991 2.997 3.015 91.78% Castro::do_advance_ctu() 10 2.991 2.997 3.015 91.78% Castro::construct_ctu_hydro_source() 10 2.256 2.258 2.262 68.87% Gravity::make_radial_gravity() 21 0.3114 0.3188 0.3335 10.15% AmrLevel::FillPatch() 41 0.1872 0.2006 0.2181 6.64% check_for_negative_density() 10 0.03254 0.133 0.2132 6.49% Gravity::get_new_grav_vector() 11 0.2092 0.2102 0.2116 6.44% Castro::construct_old_gravity() 10 0.1846 0.1901 0.201 6.12% Gravity::get_old_grav_vector() 10 0.1838 0.1894 0.2004 6.10% FillPatchIterator::Initialize 41 0.1546 0.1679 0.194 5.91% Castro::construct_new_gravity() 10 0.1872 0.1879 0.1886 5.74% Castro::initialize_do_advance() 10 0.1608 0.1667 0.1726 5.25% Amr::init() 1 0.1715 0.1717 0.1717 5.23% FillPatchIterator::FillFromLevel0() 41 0.1171 0.126 0.1598 4.87% FillPatchSingleLevel 41 0.117 0.1259 0.1597 4.86% Amr::initialInit() 1 0.157 0.1574 0.1576 4.80% Amr::InitializeInit() 1 0.05794 0.09263 0.1311 3.99% Amr::defBaseLevel() 1 0.05794 0.09263 0.1311 3.99% FabArray::ParallelCopy() 41 0.08205 0.0938 0.13 3.96% Castro::expand_state() 10 0.1057 0.114 0.1262 3.84% Castro::clean_state() 62 0.1137 0.1207 0.1251 3.81% Castro::initData() 1 0.04179 0.07625 0.1134 3.45% Castro::estTimeStep() 21 0.03206 0.06725 0.1038 3.16% Amr::FinalizeInit() 1 0.02586 0.06479 0.0995 3.03% Castro::do_old_sources() 10 0.0916 0.09478 0.09728 2.96% FabArray::ParallelCopy_finish() 41 0.04076 0.05329 0.09606 2.92% amrex::Copy() 193 0.0619 0.07935 0.08584 2.61% Castro::initialize_advance() 10 0.05232 0.07002 0.07629 2.32% Castro::computeInitialDt() 2 0.002168 0.04064 0.07536 2.29% FabArray::setVal() 143 0.0532 0.06696 0.07466 2.27% Castro::do_new_sources() 10 0.05929 0.06479 0.07056 2.15% Castro::computeTemp() 63 0.06057 0.06603 0.069 2.10% Castro::normalize_species() 62 0.04624 0.04937 0.05091 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04374 0.04749 0.04953 1.51% Castro::reset_internal_energy(Fab) 1008 0.04345 0.0472 0.04923 1.50% FabArray::ParallelCopy_nowait() 41 0.03383 0.04042 0.04332 1.32% StateDataPhysBCFunct::() 41 0.02968 0.03202 0.03489 1.06% StateData::FillBoundary(geom) 41 0.02958 0.03192 0.03479 1.06% Castro::construct_new_source() 50 0.02785 0.03029 0.03276 1.00% Gravity::interpolate_monopole_grav() 21 0.02706 0.02737 0.02803 0.85% Castro::construct_new_gravity_source() 10 0.02255 0.02425 0.02666 0.81% Castro::finalize_do_advance() 10 0.01281 0.01879 0.02431 0.74% Castro::post_init() 1 0.02319 0.02348 0.02376 0.72% Amr::writePlotFile() 2 0.02182 0.02195 0.0224 0.68% Castro::post_timestep() 10 0.01562 0.01671 0.0177 0.54% Castro::apply_source_to_state() 20 0.01018 0.01242 0.01347 0.41% FabArray::Saxpy() 20 0.01014 0.01237 0.01342 0.41% Castro::check_for_nan() 20 0.01017 0.01108 0.01198 0.36% MultiFab::contains_nan() 20 0.01014 0.01105 0.01195 0.36% VisMF::Write(FabArray) 2 0.008783 0.009401 0.01164 0.35% Castro::Castro() 1 0.01002 0.01058 0.01153 0.35% FabArray::setDomainBndry() 41 0.007328 0.009771 0.01141 0.35% Castro::construct_old_source() 50 0.00695 0.009388 0.01008 0.31% Castro::construct_old_gravity_source() 10 0.006899 0.009312 0.009986 0.30% Castro::computeNewDt() 9 0.008795 0.008823 0.008845 0.27% Castro::initMFs() 1 0.006241 0.006741 0.008026 0.24% Other 261 0.02562 0.02884 0.03157 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6754 KiB 6761 KiB 6765 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4559 KiB 4587 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 232 KiB 255 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2801 KiB 2804 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 241 KiB 247 KiB 259 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 44 KiB 63 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized