Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:14 UTC on 2024-12-23. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015807893 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34801725 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338590599 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.33434622 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321261655 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352900464 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296853306 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.291804501 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.291528897 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.290031522 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.288930351 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008056381 seconds Ending run at 06:19:17 UTC on 2024-12-23. Run time = 3.348393972 Run time without initialization = 3.168466906 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3467 ... 3.3478 ... 3.3485 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9928 2.1003 2.1777 65.04% Gravity::make_radial_gravity() 21 0.3143 0.322 0.3362 10.04% check_for_negative_density() 10 0.05471 0.1329 0.2458 7.34% FabArray::ParallelCopy_finish() 41 0.05914 0.08144 0.1265 3.78% Castro::initData() 1 0.03996 0.0759 0.1124 3.36% Castro::estTimeStep() 21 0.03372 0.07064 0.1025 3.06% amrex::Copy() 193 0.06059 0.08225 0.0935 2.79% FabArray::setVal() 143 0.06398 0.07123 0.0766 2.29% Castro::normalize_species() 62 0.04631 0.04784 0.05188 1.55% Castro::reset_internal_energy(Fab) 1008 0.04631 0.04751 0.04867 1.45% FabArray::ParallelCopy_nowait() 41 0.0322 0.04045 0.04356 1.30% StateData::FillBoundary(geom) 41 0.02865 0.03331 0.03679 1.10% FillPatchIterator::Initialize 41 0.02566 0.03264 0.03579 1.07% Gravity::interpolate_monopole_grav() 21 0.027 0.02811 0.0294 0.88% Castro::construct_new_gravity_source() 10 0.02305 0.02422 0.02657 0.79% Castro::computeTemp() 63 0.01844 0.01898 0.01947 0.58% Castro::initialize_do_advance() 10 0.01017 0.01631 0.01898 0.57% Amr::writePlotFile() 2 0.008429 0.01135 0.01375 0.41% Castro::initialize_advance() 10 0.005213 0.01039 0.01331 0.40% VisMF::Write(FabArray) 2 0.008593 0.009685 0.01275 0.38% FabArray::Saxpy() 20 0.009621 0.01148 0.01267 0.38% MultiFab::contains_nan() 20 0.01058 0.01151 0.01266 0.38% FabArray::setDomainBndry() 41 0.006712 0.009901 0.01156 0.35% Castro::construct_old_gravity_source() 10 0.005962 0.008417 0.009198 0.27% Castro::initMFs() 1 0.006464 0.007013 0.007688 0.23% Castro::enforce_min_density() 62 0.00583 0.006138 0.006491 0.19% Castro::construct_new_source() 50 0.005101 0.005941 0.006286 0.19% main() 1 0.003787 0.004868 0.005542 0.17% Gravity::get_new_grav_vector() 11 0.003137 0.003712 0.004002 0.12% Amr::coarseTimeStep() 10 0.00206 0.002904 0.003672 0.11% Gravity::get_old_grav_vector() 10 0.001637 0.002113 0.002443 0.07% Castro::finalize_do_advance() 10 0.0004121 0.001019 0.001114 0.03% AmrLevel::FillPatch() 41 0.0007795 0.0008424 0.0009143 0.03% Amr::timeStep() 10 0.0001837 0.0002278 0.0003617 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002894 0.000307 0.0003252 0.01% Castro::clean_state() 62 0.000138 0.0001609 0.0002104 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001699 0.0002043 0.01% StateDataPhysBCFunct::() 41 0.0001015 0.0001136 0.0001447 0.00% FabArray::ParallelCopy() 41 9.207e-05 0.0001036 0.0001245 0.00% FillPatchIterator::FillFromLevel0() 41 9.644e-05 0.0001092 0.0001243 0.00% Castro::do_old_sources() 10 7.5e-05 8.602e-05 9.899e-05 0.00% Castro::Castro() 1 6.285e-05 7.391e-05 9.606e-05 0.00% Amr::FinalizeInit() 1 3.87e-06 1.383e-05 7.372e-05 0.00% FillPatchSingleLevel 41 6.533e-05 6.858e-05 7.338e-05 0.00% Castro::construct_old_source() 50 5.805e-05 6.616e-05 7.327e-05 0.00% Castro::do_new_sources() 10 5.012e-05 6.055e-05 7.112e-05 0.00% Castro::subcycle_advance_ctu() 10 4.076e-05 4.891e-05 5.904e-05 0.00% Castro::apply_source_to_state() 20 3.998e-05 4.859e-05 5.843e-05 0.00% Castro::advance() 10 3.824e-05 4.583e-05 5.339e-05 0.00% Castro::construct_old_gravity() 10 3.28e-05 4.056e-05 5.018e-05 0.00% Amr::defBaseLevel() 1 2.899e-05 3.822e-05 4.344e-05 0.00% Castro::construct_new_gravity() 10 3.377e-05 3.72e-05 4.143e-05 0.00% Castro::expand_state() 10 2.026e-05 2.606e-05 3.317e-05 0.00% Castro::check_for_nan() 20 2.171e-05 2.555e-05 2.934e-05 0.00% Castro::post_timestep() 10 1.347e-05 1.636e-05 2.014e-05 0.00% Castro::post_init() 1 7.828e-06 9.144e-06 1.233e-05 0.00% Castro::computeNewDt() 9 8.757e-06 1.004e-05 1.218e-05 0.00% Amr::InitializeInit() 1 2.826e-06 3.422e-06 5.531e-06 0.00% Castro::computeInitialDt() 2 3.8e-06 4.147e-06 4.816e-06 0.00% Amr::init() 1 1.994e-06 2.37e-06 2.798e-06 0.00% Amr::initialInit() 1 1.411e-06 1.731e-06 2.202e-06 0.00% Other 199 0.01038 0.01261 0.01406 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.347 3.348 3.348 100.00% Amr::coarseTimeStep() 10 3.155 3.155 3.155 94.22% Amr::timeStep() 10 3.141 3.142 3.143 93.86% Castro::advance() 10 3.125 3.126 3.126 93.36% Castro::subcycle_advance_ctu() 10 3.045 3.048 3.059 91.37% Castro::do_advance_ctu() 10 3.045 3.048 3.059 91.37% Castro::construct_ctu_hydro_source() 10 2.25 2.255 2.263 67.60% Gravity::make_radial_gravity() 21 0.3308 0.3382 0.3493 10.43% check_for_negative_density() 10 0.05471 0.1329 0.2458 7.34% AmrLevel::FillPatch() 41 0.2103 0.2307 0.243 7.26% Gravity::get_new_grav_vector() 11 0.2171 0.2211 0.2226 6.65% FillPatchIterator::Initialize 41 0.1775 0.1982 0.2209 6.60% Castro::construct_old_gravity() 10 0.2016 0.2097 0.2196 6.56% Gravity::get_old_grav_vector() 10 0.201 0.2091 0.2189 6.54% Castro::construct_new_gravity() 10 0.192 0.1952 0.1967 5.88% FillPatchIterator::FillFromLevel0() 41 0.1333 0.1557 0.1885 5.63% FillPatchSingleLevel 41 0.1331 0.1556 0.1884 5.63% Castro::initialize_do_advance() 10 0.1641 0.1726 0.1798 5.37% Amr::init() 1 0.1794 0.1795 0.1796 5.36% Amr::initialInit() 1 0.1634 0.1639 0.1644 4.91% FabArray::ParallelCopy() 41 0.1 0.1221 0.1589 4.75% Amr::InitializeInit() 1 0.06099 0.0973 0.134 4.00% Amr::defBaseLevel() 1 0.06098 0.09729 0.134 4.00% FabArray::ParallelCopy_finish() 41 0.05914 0.08144 0.1265 3.78% Castro::clean_state() 62 0.1188 0.12 0.1237 3.70% Castro::expand_state() 10 0.1106 0.1182 0.1231 3.68% Castro::do_old_sources() 10 0.09585 0.1102 0.118 3.52% Castro::initData() 1 0.0441 0.07987 0.1161 3.47% Castro::estTimeStep() 21 0.03372 0.07064 0.1025 3.06% Amr::FinalizeInit() 1 0.02933 0.06657 0.1024 3.06% amrex::Copy() 193 0.06059 0.08225 0.0935 2.79% Castro::initialize_advance() 10 0.06156 0.07323 0.07677 2.29% FabArray::setVal() 143 0.06398 0.07123 0.0766 2.29% Castro::computeInitialDt() 2 0.002274 0.03899 0.07513 2.24% Castro::computeTemp() 63 0.06547 0.06679 0.06827 2.04% Castro::do_new_sources() 10 0.06157 0.06355 0.06803 2.03% Castro::normalize_species() 62 0.04631 0.04784 0.05188 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04663 0.04782 0.04899 1.46% Castro::reset_internal_energy(Fab) 1008 0.04631 0.04751 0.04867 1.45% FabArray::ParallelCopy_nowait() 41 0.03231 0.04055 0.04365 1.30% StateDataPhysBCFunct::() 41 0.02875 0.03342 0.03693 1.10% StateData::FillBoundary(geom) 41 0.02865 0.03331 0.03679 1.10% Castro::construct_new_source() 50 0.02867 0.03016 0.03263 0.97% Gravity::interpolate_monopole_grav() 21 0.027 0.02811 0.0294 0.88% Castro::post_init() 1 0.02662 0.02704 0.02751 0.82% Castro::construct_new_gravity_source() 10 0.02305 0.02422 0.02657 0.79% Castro::finalize_do_advance() 10 0.01976 0.02392 0.02598 0.78% Amr::writePlotFile() 2 0.02327 0.02381 0.02431 0.73% Castro::post_timestep() 10 0.01595 0.01632 0.0169 0.50% VisMF::Write(FabArray) 2 0.008593 0.009685 0.01275 0.38% Castro::apply_source_to_state() 20 0.009667 0.01153 0.01272 0.38% Castro::check_for_nan() 20 0.0106 0.01154 0.01268 0.38% FabArray::Saxpy() 20 0.009621 0.01148 0.01267 0.38% MultiFab::contains_nan() 20 0.01058 0.01151 0.01266 0.38% Castro::Castro() 1 0.009223 0.01109 0.0121 0.36% FabArray::setDomainBndry() 41 0.006712 0.009901 0.01156 0.35% Castro::construct_old_source() 50 0.006021 0.008483 0.009267 0.28% Castro::construct_old_gravity_source() 10 0.005962 0.008417 0.009198 0.27% Castro::computeNewDt() 9 0.008746 0.008755 0.008762 0.26% Castro::initMFs() 1 0.006464 0.007013 0.007688 0.23% Castro::enforce_min_density() 62 0.00583 0.006138 0.006491 0.19% Other 199 0.02108 0.02451 0.02701 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 32 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8666 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6744 KiB 6750 KiB 6752 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4541 KiB 4548 KiB 4566 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 235 KiB 252 KiB 266 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 251 KiB 257 KiB 266 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 53 KiB 70 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 77 KiB 80 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized