Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:21:09 UTC on 2024-12-24. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014793147 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339965297 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340400054 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.357372065 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.369903004 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370000098 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.359575212 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.358110456 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.359278003 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.361392361 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.365758909 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.013011987 seconds Ending run at 06:21:13 UTC on 2024-12-24. Run time = 3.770635825 Run time without initialization = 3.603862841 Average number of zones advanced per microsecond: 0.727 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7699 ... 3.7704 ... 3.7707 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1754 2.3302 2.4808 65.79% check_for_negative_density() 10 0.04071 0.1943 0.3526 9.35% Gravity::make_radial_gravity() 21 0.3017 0.3135 0.3245 8.61% amrex::Copy() 193 0.1064 0.1146 0.1228 3.26% Castro::estTimeStep() 21 0.02712 0.06458 0.1039 2.76% Castro::initData() 1 0.03743 0.07229 0.1022 2.71% FabArray::setVal() 143 0.08825 0.09759 0.101 2.68% FabArray::ParallelCopy_finish() 41 0.0503 0.05613 0.06509 1.73% Castro::normalize_species() 62 0.04753 0.05432 0.06308 1.67% FabArray::ParallelCopy_nowait() 41 0.05902 0.06119 0.0627 1.66% FillPatchIterator::Initialize 41 0.04312 0.05017 0.05679 1.51% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05108 0.05634 1.49% StateData::FillBoundary(geom) 41 0.03516 0.03884 0.04392 1.16% Castro::construct_new_gravity_source() 10 0.02944 0.0317 0.03423 0.91% Castro::initialize_do_advance() 10 0.02244 0.02603 0.02959 0.78% Gravity::interpolate_monopole_grav() 21 0.02744 0.02765 0.02794 0.74% Castro::computeTemp() 63 0.01913 0.02017 0.02124 0.56% FabArray::Saxpy() 20 0.01632 0.01824 0.0206 0.55% MultiFab::contains_nan() 20 0.01346 0.01541 0.01802 0.48% FabArray::setDomainBndry() 41 0.01434 0.0166 0.01798 0.48% Castro::construct_old_gravity_source() 10 0.01462 0.01561 0.01669 0.44% Castro::initialize_advance() 10 0.01414 0.01485 0.0156 0.41% VisMF::Write(FabArray) 2 0.009928 0.0112 0.01454 0.39% Amr::writePlotFile() 2 0.008595 0.01199 0.01363 0.36% Amr::coarseTimeStep() 10 0.00499 0.006973 0.009588 0.25% Castro::construct_new_source() 50 0.00744 0.008414 0.009397 0.25% Castro::initMFs() 1 0.006344 0.006969 0.008318 0.22% main() 1 0.00674 0.007184 0.00753 0.20% Gravity::get_new_grav_vector() 11 0.003535 0.004974 0.005811 0.15% Gravity::get_old_grav_vector() 10 0.002999 0.003279 0.00376 0.10% Castro::finalize_do_advance() 10 0.001256 0.001271 0.001297 0.03% AmrLevel::FillPatch() 41 0.0009203 0.001047 0.001129 0.03% Amr::timeStep() 10 0.0001718 0.0002456 0.0003755 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003092 0.0003413 0.0003714 0.01% Castro::do_advance_ctu() 10 0.0001824 0.0002042 0.0002576 0.01% Castro::clean_state() 62 0.0001687 0.0001956 0.0002147 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001204 0.0001435 0.000161 0.00% Castro::do_old_sources() 10 0.0001095 0.0001304 0.0001502 0.00% FabArray::ParallelCopy() 41 0.0001183 0.0001376 0.0001501 0.00% StateDataPhysBCFunct::() 41 0.0001153 0.0001315 0.0001428 0.00% Castro::construct_old_source() 50 8.932e-05 0.0001125 0.0001402 0.00% FillPatchSingleLevel 41 8.659e-05 9.192e-05 9.776e-05 0.00% Castro::do_new_sources() 10 7.289e-05 8.308e-05 9.447e-05 0.00% Castro::Castro() 1 5.427e-05 7.19e-05 8.92e-05 0.00% Amr::FinalizeInit() 1 3.584e-06 1.595e-05 8.884e-05 0.00% Castro::subcycle_advance_ctu() 10 5.257e-05 6.826e-05 8.6e-05 0.00% Castro::apply_source_to_state() 20 5.886e-05 6.982e-05 8.046e-05 0.00% Castro::construct_old_gravity() 10 4.176e-05 5.2e-05 6.848e-05 0.00% Castro::advance() 10 4.937e-05 6.012e-05 6.824e-05 0.00% Castro::expand_state() 10 3.504e-05 4.734e-05 6.241e-05 0.00% Amr::defBaseLevel() 1 3.363e-05 5.544e-05 6.088e-05 0.00% Castro::construct_new_gravity() 10 3.546e-05 4.289e-05 6.082e-05 0.00% Castro::check_for_nan() 20 2.813e-05 3.137e-05 3.847e-05 0.00% Castro::computeNewDt() 9 9.759e-06 1.858e-05 2.9e-05 0.00% Castro::post_timestep() 10 1.33e-05 2.046e-05 2.57e-05 0.00% Castro::post_init() 1 7.65e-06 9.076e-06 1.234e-05 0.00% Amr::InitializeInit() 1 2.623e-06 3.352e-06 6.127e-06 0.00% Castro::computeInitialDt() 2 3.259e-06 3.581e-06 4.016e-06 0.00% Amr::init() 1 1.838e-06 2.481e-06 2.938e-06 0.00% Amr::initialInit() 1 1.171e-06 1.807e-06 2.709e-06 0.00% Other 261 0.01665 0.01959 0.02136 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.77 3.77 3.771 100.00% Amr::coarseTimeStep() 10 3.583 3.583 3.583 95.03% Amr::timeStep() 10 3.561 3.564 3.566 94.56% Castro::advance() 10 3.545 3.546 3.547 94.06% Castro::subcycle_advance_ctu() 10 3.435 3.443 3.454 91.60% Castro::do_advance_ctu() 10 3.435 3.443 3.454 91.60% Castro::construct_ctu_hydro_source() 10 2.544 2.549 2.554 67.74% check_for_negative_density() 10 0.04071 0.1943 0.3526 9.35% Gravity::make_radial_gravity() 21 0.3234 0.3362 0.3478 9.22% AmrLevel::FillPatch() 41 0.2483 0.2729 0.2924 7.76% Castro::initialize_do_advance() 10 0.2074 0.2251 0.2427 6.44% FillPatchIterator::Initialize 41 0.2045 0.2236 0.24 6.37% Gravity::get_new_grav_vector() 11 0.2288 0.2309 0.2327 6.17% Castro::construct_old_gravity() 10 0.195 0.205 0.2138 5.67% Gravity::get_old_grav_vector() 10 0.1938 0.2039 0.2128 5.64% Castro::construct_new_gravity() 10 0.205 0.2072 0.209 5.54% Castro::expand_state() 10 0.1346 0.1541 0.1696 4.50% Amr::init() 1 0.1662 0.1664 0.1664 4.41% FillPatchIterator::FillFromLevel0() 41 0.1461 0.1568 0.1656 4.39% FillPatchSingleLevel 41 0.146 0.1566 0.1654 4.39% Amr::initialInit() 1 0.1512 0.1515 0.1517 4.02% Castro::clean_state() 62 0.1229 0.1324 0.1404 3.72% Castro::do_old_sources() 10 0.1315 0.1348 0.138 3.66% FabArray::ParallelCopy() 41 0.1106 0.1176 0.1266 3.36% Amr::InitializeInit() 1 0.05687 0.09299 0.1239 3.29% Amr::defBaseLevel() 1 0.05687 0.09298 0.1239 3.29% amrex::Copy() 193 0.1064 0.1146 0.1228 3.26% Castro::initData() 1 0.04133 0.07622 0.1061 2.81% Castro::initialize_advance() 10 0.08665 0.09758 0.1053 2.79% Castro::estTimeStep() 21 0.02712 0.06458 0.1039 2.76% FabArray::setVal() 143 0.08825 0.09759 0.101 2.68% Amr::FinalizeInit() 1 0.02764 0.05848 0.09478 2.51% Castro::do_new_sources() 10 0.077 0.08029 0.0854 2.26% Castro::computeTemp() 63 0.06756 0.07159 0.07795 2.07% Castro::computeInitialDt() 2 0.002198 0.03308 0.06923 1.84% FabArray::ParallelCopy_finish() 41 0.0503 0.05613 0.06509 1.73% Castro::normalize_species() 62 0.04753 0.05432 0.06308 1.67% FabArray::ParallelCopy_nowait() 41 0.05914 0.06131 0.06282 1.67% Castro::reset_internal_energy(MultiFab) 63 0.04843 0.05142 0.05671 1.50% Castro::reset_internal_energy(Fab) 1008 0.04812 0.05108 0.05634 1.49% StateDataPhysBCFunct::() 41 0.03528 0.03897 0.04405 1.17% StateData::FillBoundary(geom) 41 0.03516 0.03884 0.04392 1.16% Castro::construct_new_source() 50 0.03717 0.04011 0.04363 1.16% Castro::construct_new_gravity_source() 10 0.02944 0.0317 0.03423 0.91% Amr::writePlotFile() 2 0.02781 0.02804 0.02832 0.75% Gravity::interpolate_monopole_grav() 21 0.02744 0.02765 0.02794 0.74% Castro::finalize_do_advance() 10 0.01456 0.02106 0.02582 0.68% Castro::post_init() 1 0.02462 0.02478 0.02502 0.66% Castro::apply_source_to_state() 20 0.01638 0.01831 0.02067 0.55% FabArray::Saxpy() 20 0.01632 0.01824 0.0206 0.55% Castro::post_timestep() 10 0.01534 0.0178 0.02019 0.54% Castro::check_for_nan() 20 0.01349 0.01544 0.01806 0.48% MultiFab::contains_nan() 20 0.01346 0.01541 0.01802 0.48% FabArray::setDomainBndry() 41 0.01434 0.0166 0.01798 0.48% Castro::construct_old_source() 50 0.01471 0.01572 0.01683 0.45% Castro::construct_old_gravity_source() 10 0.01462 0.01561 0.01669 0.44% VisMF::Write(FabArray) 2 0.009928 0.0112 0.01454 0.39% Castro::Castro() 1 0.009595 0.01074 0.01203 0.32% Castro::computeNewDt() 9 0.01167 0.01173 0.01176 0.31% Castro::initMFs() 1 0.006344 0.006969 0.008318 0.22% Other 261 0.02758 0.03207 0.03548 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 29 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6812 KiB 6817 KiB 6819 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4562 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 247 KiB 276 KiB 299 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 18 KiB 19 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2818 KiB 2820 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 218 KiB 227 KiB 235 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 48 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized