Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:20:19 UTC on 2024-12-25. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018983722 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.407968987 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.376868536 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.378329165 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.400170362 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.377689353 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.365021919 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.364872429 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.356803792 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.355885303 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.357980567 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012881082 seconds Ending run at 06:20:23 UTC on 2024-12-25. Run time = 3.944507662 Run time without initialization = 3.762633777 Average number of zones advanced per microsecond: 0.697 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9442 ... 3.9444 ... 3.9446 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2038 2.4388 2.6149 66.29% check_for_negative_density() 10 0.02717 0.2081 0.4464 11.32% Gravity::make_radial_gravity() 21 0.2973 0.3123 0.3389 8.59% amrex::Copy() 193 0.09975 0.1229 0.1375 3.49% FabArray::setVal() 143 0.09518 0.1052 0.111 2.81% Castro::initData() 1 0.03721 0.07149 0.102 2.59% FabArray::ParallelCopy_finish() 41 0.05852 0.06909 0.09309 2.36% Castro::estTimeStep() 21 0.02564 0.0597 0.09009 2.28% FabArray::ParallelCopy_nowait() 41 0.05631 0.06511 0.07027 1.78% Castro::normalize_species() 62 0.04862 0.05543 0.06501 1.65% FillPatchIterator::Initialize 41 0.04861 0.05578 0.06206 1.57% Castro::reset_internal_energy(Fab) 1008 0.0495 0.05196 0.05378 1.36% StateData::FillBoundary(geom) 41 0.0354 0.04124 0.04615 1.17% Castro::construct_new_gravity_source() 10 0.02941 0.03257 0.03582 0.91% Castro::initialize_do_advance() 10 0.02543 0.0277 0.03046 0.77% Gravity::interpolate_monopole_grav() 21 0.02711 0.02755 0.028 0.71% Castro::computeTemp() 63 0.01926 0.02085 0.02213 0.56% FabArray::Saxpy() 20 0.02008 0.0206 0.0215 0.55% FabArray::setDomainBndry() 41 0.01564 0.01848 0.02075 0.53% VisMF::Write(FabArray) 2 0.01206 0.01357 0.01939 0.49% Castro::initialize_advance() 10 0.01546 0.01677 0.01789 0.45% Castro::construct_old_gravity_source() 10 0.01423 0.01629 0.01716 0.43% MultiFab::contains_nan() 20 0.0132 0.01454 0.01508 0.38% Amr::writePlotFile() 2 0.009222 0.01267 0.01393 0.35% Castro::initMFs() 1 0.008589 0.009487 0.01102 0.28% Castro::construct_new_source() 50 0.007195 0.008641 0.009503 0.24% main() 1 0.007287 0.007546 0.007724 0.20% Gravity::get_new_grav_vector() 11 0.003835 0.005209 0.006032 0.15% Amr::coarseTimeStep() 10 0.001375 0.003459 0.005055 0.13% Gravity::get_old_grav_vector() 10 0.002942 0.003195 0.003431 0.09% Castro::finalize_do_advance() 10 0.001194 0.001285 0.001321 0.03% AmrLevel::FillPatch() 41 0.0009392 0.001055 0.001178 0.03% Amr::timeStep() 10 0.0001582 0.0002604 0.0006682 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0003495 0.0003576 0.0003712 0.01% Castro::do_advance_ctu() 10 0.0001811 0.0002037 0.0002314 0.01% Castro::clean_state() 62 0.0001951 0.0002137 0.0002237 0.01% Castro::Castro() 1 6.665e-05 0.0001314 0.0002015 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001396 0.000156 0.0001745 0.00% StateDataPhysBCFunct::() 41 0.000128 0.000147 0.0001699 0.00% Castro::do_old_sources() 10 0.0001074 0.0001265 0.0001491 0.00% FabArray::ParallelCopy() 41 0.0001258 0.0001382 0.0001481 0.00% Castro::construct_old_source() 50 8.964e-05 0.0001105 0.0001338 0.00% FillPatchSingleLevel 41 8.511e-05 9.669e-05 0.0001071 0.00% Castro::subcycle_advance_ctu() 10 5.8e-05 7.228e-05 8.226e-05 0.00% Castro::do_new_sources() 10 6.537e-05 7.386e-05 8.092e-05 0.00% Castro::apply_source_to_state() 20 6.408e-05 7.421e-05 7.982e-05 0.00% Castro::advance() 10 5.536e-05 6.105e-05 7.214e-05 0.00% Amr::FinalizeInit() 1 4.197e-06 1.37e-05 7.139e-05 0.00% Castro::construct_new_gravity() 10 3.509e-05 4.159e-05 5.422e-05 0.00% Castro::expand_state() 10 4.008e-05 4.693e-05 5.418e-05 0.00% Castro::construct_old_gravity() 10 4.063e-05 4.592e-05 5.268e-05 0.00% Amr::defBaseLevel() 1 3.442e-05 4.52e-05 5.263e-05 0.00% Castro::check_for_nan() 20 2.521e-05 2.943e-05 3.283e-05 0.00% Castro::post_timestep() 10 1.595e-05 1.886e-05 2.385e-05 0.00% Castro::post_init() 1 8.245e-06 1.156e-05 1.733e-05 0.00% Castro::computeNewDt() 9 9.259e-06 1.096e-05 1.612e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.735e-06 1.017e-05 1.54e-05 0.00% Amr::InitializeInit() 1 2.776e-06 3.544e-06 6.517e-06 0.00% Castro::computeInitialDt() 2 3.899e-06 4.49e-06 5.459e-06 0.00% Amr::init() 1 2.224e-06 2.797e-06 3.897e-06 0.00% Amr::initialInit() 1 1.342e-06 2.15e-06 3.018e-06 0.00% Other 260 0.0197 0.02333 0.02536 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.944 3.944 3.945 100.00% Amr::coarseTimeStep() 10 3.742 3.742 3.742 94.87% Amr::timeStep() 10 3.727 3.729 3.731 94.58% Castro::advance() 10 3.71 3.711 3.711 94.09% Castro::subcycle_advance_ctu() 10 3.593 3.601 3.611 91.53% Castro::do_advance_ctu() 10 3.593 3.601 3.61 91.53% Castro::construct_ctu_hydro_source() 10 2.667 2.671 2.68 67.95% check_for_negative_density() 10 0.02717 0.2081 0.4464 11.32% Gravity::make_radial_gravity() 21 0.3224 0.3377 0.3622 9.18% AmrLevel::FillPatch() 41 0.286 0.3026 0.3192 8.09% FillPatchIterator::Initialize 41 0.2459 0.2504 0.2575 6.53% Castro::initialize_do_advance() 10 0.2289 0.2432 0.2558 6.48% Gravity::get_new_grav_vector() 11 0.2318 0.2337 0.2352 5.96% Castro::construct_old_gravity() 10 0.1995 0.2106 0.2277 5.77% Gravity::get_old_grav_vector() 10 0.1986 0.2097 0.2269 5.75% Castro::construct_new_gravity() 10 0.2056 0.2071 0.2085 5.29% FillPatchIterator::FillFromLevel0() 41 0.1683 0.1761 0.1855 4.70% FillPatchSingleLevel 41 0.1682 0.176 0.1854 4.70% Castro::expand_state() 10 0.1538 0.1697 0.1836 4.65% Amr::init() 1 0.1813 0.1815 0.1815 4.60% Amr::initialInit() 1 0.1621 0.163 0.1631 4.14% FabArray::ParallelCopy() 41 0.1262 0.1345 0.1497 3.80% Castro::do_old_sources() 10 0.1437 0.1463 0.1474 3.74% Castro::clean_state() 62 0.1273 0.1352 0.1452 3.68% amrex::Copy() 193 0.09975 0.1229 0.1375 3.49% Amr::InitializeInit() 1 0.06642 0.1006 0.1322 3.35% Amr::defBaseLevel() 1 0.06641 0.1006 0.1322 3.35% Castro::initialize_advance() 10 0.09542 0.1047 0.1128 2.86% FabArray::setVal() 143 0.09518 0.1052 0.111 2.81% Castro::initData() 1 0.04165 0.07654 0.1068 2.71% Amr::FinalizeInit() 1 0.03086 0.06234 0.09668 2.45% FabArray::ParallelCopy_finish() 41 0.05852 0.06909 0.09309 2.36% Castro::estTimeStep() 21 0.02564 0.0597 0.09009 2.28% Castro::do_new_sources() 10 0.07593 0.08244 0.08667 2.20% Castro::computeTemp() 63 0.06912 0.07317 0.07628 1.93% FabArray::ParallelCopy_nowait() 41 0.05651 0.06525 0.0704 1.78% Castro::computeInitialDt() 2 0.002208 0.03383 0.06805 1.73% Castro::normalize_species() 62 0.04862 0.05543 0.06501 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04985 0.05232 0.05415 1.37% Castro::reset_internal_energy(Fab) 1008 0.0495 0.05196 0.05378 1.36% StateDataPhysBCFunct::() 41 0.03553 0.04138 0.0463 1.17% StateData::FillBoundary(geom) 41 0.0354 0.04124 0.04615 1.17% Castro::construct_new_source() 50 0.03661 0.04121 0.04533 1.15% Castro::construct_new_gravity_source() 10 0.02941 0.03257 0.03582 0.91% Amr::writePlotFile() 2 0.03136 0.03151 0.03213 0.81% Castro::post_init() 1 0.02734 0.02782 0.02812 0.71% Gravity::interpolate_monopole_grav() 21 0.02711 0.02755 0.028 0.71% Castro::finalize_do_advance() 10 0.01338 0.01841 0.02651 0.67% Castro::apply_source_to_state() 20 0.02015 0.02068 0.02158 0.55% FabArray::Saxpy() 20 0.02008 0.0206 0.0215 0.55% FabArray::setDomainBndry() 41 0.01564 0.01848 0.02075 0.53% Castro::post_timestep() 10 0.01612 0.01753 0.0197 0.50% VisMF::Write(FabArray) 2 0.01206 0.01357 0.01939 0.49% Castro::Castro() 1 0.01496 0.01643 0.01772 0.45% Castro::construct_old_source() 50 0.01436 0.0164 0.01729 0.44% Castro::construct_old_gravity_source() 10 0.01423 0.01629 0.01716 0.43% Castro::check_for_nan() 20 0.01323 0.01457 0.0151 0.38% MultiFab::contains_nan() 20 0.0132 0.01454 0.01508 0.38% Castro::initMFs() 1 0.008589 0.009487 0.01102 0.28% Castro::computeNewDt() 9 0.008752 0.008765 0.00878 0.22% AmrLevel::AmrLevel(dm) 1 0.006991 0.007348 0.007897 0.20% Other 260 0.02556 0.03025 0.03318 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 23 B 27 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8653 KiB 8664 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6797 KiB 6801 KiB 6802 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4561 KiB 4569 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 272 KiB 292 KiB 310 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2818 KiB 2822 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 208 KiB 218 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 50 KiB 52 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 68 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized