Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:18:45 UTC on 2024-12-26. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014223668 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.327393922 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328374242 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.298685664 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.299590282 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.34597146 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300137277 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.281552832 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.279582321 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.28054864 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.281953273 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007424501 seconds Ending run at 06:18:48 UTC on 2024-12-26. Run time = 3.210496596 Run time without initialization = 3.036382813 Average number of zones advanced per microsecond: 0.863 Average number of zones advanced per microsecond per rank: 0.108 TinyProfiler total time across processes [min...avg...max]: 3.2100 ... 3.2101 ... 3.2106 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0474 2.0877 2.1240 66.16% Gravity::make_radial_gravity() 21 0.2859 0.2932 0.3079 9.59% check_for_negative_density() 10 0.05671 0.09237 0.1325 4.13% Castro::initData() 1 0.03743 0.07207 0.1119 3.49% Castro::estTimeStep() 21 0.03085 0.06834 0.1079 3.36% FabArray::ParallelCopy_finish() 41 0.03759 0.04983 0.08459 2.63% amrex::Copy() 193 0.06486 0.07761 0.08447 2.63% FabArray::setVal() 143 0.06084 0.06801 0.07674 2.39% Castro::normalize_species() 62 0.04528 0.04603 0.04701 1.46% Castro::reset_internal_energy(Fab) 1008 0.04379 0.04548 0.04699 1.46% FabArray::ParallelCopy_nowait() 41 0.03542 0.04025 0.04198 1.31% FillPatchIterator::Initialize 41 0.02712 0.03173 0.03439 1.07% StateData::FillBoundary(geom) 41 0.03039 0.03219 0.03424 1.07% Gravity::interpolate_monopole_grav() 21 0.02698 0.0271 0.0274 0.85% Castro::construct_new_gravity_source() 10 0.0232 0.02462 0.02683 0.84% Castro::initialize_do_advance() 10 0.01216 0.01634 0.01922 0.60% Castro::computeTemp() 63 0.0174 0.01815 0.01881 0.59% FabArray::Saxpy() 20 0.01071 0.01248 0.01376 0.43% Castro::initialize_advance() 10 0.005275 0.01052 0.01317 0.41% MultiFab::contains_nan() 20 0.01036 0.01118 0.01236 0.39% Amr::writePlotFile() 2 0.007235 0.009832 0.0121 0.38% VisMF::Write(FabArray) 2 0.008451 0.009484 0.01194 0.37% FabArray::setDomainBndry() 41 0.007628 0.009584 0.01058 0.33% Castro::construct_old_gravity_source() 10 0.007022 0.009491 0.01009 0.31% Castro::initMFs() 1 0.006414 0.007014 0.007778 0.24% Castro::construct_new_source() 50 0.005549 0.006087 0.006461 0.20% main() 1 0.003949 0.004079 0.004536 0.14% Gravity::get_new_grav_vector() 11 0.003097 0.003459 0.003814 0.12% Gravity::get_old_grav_vector() 10 0.001632 0.002011 0.002444 0.08% Amr::coarseTimeStep() 10 0.0009826 0.001883 0.002337 0.07% Castro::finalize_do_advance() 10 0.0004867 0.001046 0.001166 0.04% AmrLevel::FillPatch() 41 0.0007863 0.0009645 0.001081 0.03% Amr::timeStep() 10 0.0001594 0.0002223 0.00039 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002848 0.0002952 0.0003186 0.01% Castro::do_advance_ctu() 10 0.0001372 0.0001589 0.0001798 0.01% Castro::clean_state() 62 0.0001352 0.0001587 0.0001756 0.01% FillPatchIterator::FillFromLevel0() 41 9.557e-05 0.0001051 0.0001167 0.00% StateDataPhysBCFunct::() 41 8.919e-05 0.0001015 0.0001143 0.00% Castro::do_old_sources() 10 7.086e-05 9.339e-05 0.000109 0.00% FabArray::ParallelCopy() 41 8.437e-05 9.603e-05 0.0001025 0.00% Castro::construct_old_source() 50 5.294e-05 7.434e-05 8.852e-05 0.00% Amr::FinalizeInit() 1 3.344e-06 1.456e-05 8.796e-05 0.00% Castro::Castro() 1 6.33e-05 7.27e-05 8.432e-05 0.00% FillPatchSingleLevel 41 5.915e-05 6.793e-05 8.214e-05 0.00% Castro::do_new_sources() 10 5.229e-05 5.922e-05 6.878e-05 0.00% Castro::advance() 10 3.936e-05 4.9e-05 6.196e-05 0.00% Castro::apply_source_to_state() 20 3.992e-05 4.883e-05 5.891e-05 0.00% Castro::subcycle_advance_ctu() 10 4.343e-05 4.902e-05 5.671e-05 0.00% Castro::construct_old_gravity() 10 3.356e-05 3.896e-05 4.618e-05 0.00% Castro::construct_new_gravity() 10 2.767e-05 3.448e-05 4.342e-05 0.00% Amr::defBaseLevel() 1 3.227e-05 3.609e-05 4.099e-05 0.00% Castro::check_for_nan() 20 2.358e-05 2.558e-05 2.912e-05 0.00% Castro::expand_state() 10 2.147e-05 2.58e-05 2.807e-05 0.00% Castro::post_timestep() 10 1.346e-05 1.521e-05 1.638e-05 0.00% Castro::post_init() 1 8.463e-06 9.911e-06 1.551e-05 0.00% Castro::computeNewDt() 9 8.527e-06 9.524e-06 1.101e-05 0.00% Amr::initialInit() 1 1.192e-06 2.571e-06 9.342e-06 0.00% Amr::InitializeInit() 1 2.445e-06 3.262e-06 5.006e-06 0.00% Castro::computeInitialDt() 2 3.046e-06 3.39e-06 3.928e-06 0.00% Amr::init() 1 1.721e-06 2.382e-06 3.616e-06 0.00% Other 261 0.01584 0.01812 0.01964 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.21 3.21 3.211 100.00% Amr::coarseTimeStep() 10 3.025 3.025 3.025 94.20% Amr::timeStep() 10 3.012 3.013 3.014 93.87% Castro::advance() 10 2.997 2.997 2.998 93.37% Castro::subcycle_advance_ctu() 10 2.918 2.924 2.935 91.41% Castro::do_advance_ctu() 10 2.918 2.924 2.935 91.40% Castro::construct_ctu_hydro_source() 10 2.199 2.202 2.204 68.65% Gravity::make_radial_gravity() 21 0.302 0.3092 0.321 10.00% AmrLevel::FillPatch() 41 0.1816 0.1958 0.2123 6.61% Gravity::get_new_grav_vector() 11 0.2049 0.2064 0.2074 6.46% Castro::construct_old_gravity() 10 0.1781 0.1831 0.1935 6.03% Gravity::get_old_grav_vector() 10 0.1774 0.1825 0.1929 6.01% FillPatchIterator::Initialize 41 0.1512 0.1641 0.1864 5.81% Castro::construct_new_gravity() 10 0.1831 0.1842 0.1849 5.76% Amr::init() 1 0.1736 0.1737 0.1738 5.41% Castro::initialize_do_advance() 10 0.1544 0.164 0.1679 5.23% Amr::initialInit() 1 0.1589 0.1593 0.1595 4.97% FillPatchIterator::FillFromLevel0() 41 0.113 0.1227 0.1517 4.72% FillPatchSingleLevel 41 0.1129 0.1226 0.1515 4.72% Amr::InitializeInit() 1 0.0567 0.0927 0.1334 4.16% Amr::defBaseLevel() 1 0.0567 0.0927 0.1334 4.16% check_for_negative_density() 10 0.05671 0.09237 0.1325 4.13% FabArray::ParallelCopy() 41 0.07843 0.09028 0.1202 3.74% Castro::expand_state() 10 0.1001 0.1113 0.1183 3.68% Castro::clean_state() 62 0.1123 0.1153 0.1179 3.67% Castro::initData() 1 0.04137 0.07577 0.1156 3.60% Castro::estTimeStep() 21 0.03085 0.06834 0.1079 3.36% Amr::FinalizeInit() 1 0.02549 0.06663 0.1028 3.20% Castro::do_old_sources() 10 0.08853 0.0927 0.09533 2.97% FabArray::ParallelCopy_finish() 41 0.03759 0.04983 0.08459 2.63% amrex::Copy() 193 0.06486 0.07761 0.08447 2.63% Castro::computeInitialDt() 2 0.002085 0.04277 0.07883 2.46% FabArray::setVal() 143 0.06084 0.06801 0.07674 2.39% Castro::initialize_advance() 10 0.05825 0.06954 0.07588 2.36% Castro::do_new_sources() 10 0.06065 0.06475 0.07123 2.22% Castro::computeTemp() 63 0.06165 0.06393 0.06592 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04408 0.04578 0.0473 1.47% Castro::normalize_species() 62 0.04528 0.04603 0.04701 1.46% Castro::reset_internal_energy(Fab) 1008 0.04379 0.04548 0.04699 1.46% FabArray::ParallelCopy_nowait() 41 0.03552 0.04035 0.04206 1.31% StateDataPhysBCFunct::() 41 0.03049 0.03229 0.03436 1.07% StateData::FillBoundary(geom) 41 0.03039 0.03219 0.03424 1.07% Castro::construct_new_source() 50 0.02908 0.03071 0.0332 1.03% Gravity::interpolate_monopole_grav() 21 0.02698 0.0271 0.0274 0.85% Castro::construct_new_gravity_source() 10 0.0232 0.02462 0.02683 0.84% Castro::post_init() 1 0.02318 0.0234 0.02355 0.73% Castro::finalize_do_advance() 10 0.01139 0.01808 0.02324 0.72% Amr::writePlotFile() 2 0.02183 0.02194 0.02239 0.70% Castro::post_timestep() 10 0.0155 0.01573 0.01604 0.50% Castro::apply_source_to_state() 20 0.01075 0.01253 0.01382 0.43% FabArray::Saxpy() 20 0.01071 0.01248 0.01376 0.43% Castro::check_for_nan() 20 0.01038 0.01121 0.01239 0.39% MultiFab::contains_nan() 20 0.01036 0.01118 0.01236 0.39% Castro::Castro() 1 0.009652 0.0109 0.01199 0.37% VisMF::Write(FabArray) 2 0.008451 0.009484 0.01194 0.37% FabArray::setDomainBndry() 41 0.007628 0.009584 0.01058 0.33% Castro::construct_old_source() 50 0.007075 0.009566 0.01018 0.32% Castro::construct_old_gravity_source() 10 0.007022 0.009491 0.01009 0.31% Castro::computeNewDt() 9 0.008536 0.008552 0.008559 0.27% Castro::initMFs() 1 0.006414 0.007014 0.007778 0.24% Other 261 0.02579 0.02917 0.03159 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6741 KiB 6748 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4536 KiB 4549 KiB 4567 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 231 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 245 KiB 255 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized