Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:30 UTC on 2024-12-27. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014406669 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.32966526 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.323974627 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330429429 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.306850725 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35215903 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.292704799 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.281537224 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.282848864 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.281289662 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.28181796 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007616735 seconds Ending run at 06:19:33 UTC on 2024-12-27. Run time = 3.262277636 Run time without initialization = 3.075578232 Average number of zones advanced per microsecond: 0.852 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2620 ... 3.2622 ... 3.2623 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0521 2.1010 2.1721 66.58% Gravity::make_radial_gravity() 21 0.289 0.2963 0.3103 9.51% check_for_negative_density() 10 0.02587 0.09853 0.1506 4.62% Castro::initData() 1 0.03766 0.07479 0.1222 3.74% Castro::estTimeStep() 21 0.02321 0.07579 0.1171 3.59% amrex::Copy() 193 0.07255 0.08286 0.08977 2.75% FabArray::setVal() 143 0.06878 0.07124 0.07458 2.29% FabArray::ParallelCopy_finish() 41 0.03899 0.0459 0.05931 1.82% Castro::reset_internal_energy(Fab) 1008 0.04345 0.04729 0.05168 1.58% Castro::normalize_species() 62 0.04523 0.04762 0.05089 1.56% FabArray::ParallelCopy_nowait() 41 0.03936 0.04242 0.04427 1.36% StateData::FillBoundary(geom) 41 0.02901 0.03257 0.03595 1.10% FillPatchIterator::Initialize 41 0.028 0.03364 0.0359 1.10% Gravity::interpolate_monopole_grav() 21 0.02719 0.02746 0.02775 0.85% Castro::construct_new_gravity_source() 10 0.02308 0.02464 0.02643 0.81% Castro::computeTemp() 63 0.01771 0.01856 0.01997 0.61% Castro::initialize_do_advance() 10 0.01341 0.01752 0.01872 0.57% Castro::initialize_advance() 10 0.01189 0.0132 0.01457 0.45% FabArray::Saxpy() 20 0.01171 0.01305 0.01393 0.43% FabArray::setDomainBndry() 41 0.007002 0.01042 0.01217 0.37% VisMF::Write(FabArray) 2 0.009199 0.009595 0.01182 0.36% MultiFab::contains_nan() 20 0.01027 0.01108 0.01167 0.36% Castro::construct_old_gravity_source() 10 0.008557 0.01018 0.01089 0.33% Amr::writePlotFile() 2 0.007633 0.009747 0.01014 0.31% Castro::initMFs() 1 0.006274 0.006876 0.007589 0.23% Castro::construct_new_source() 50 0.006181 0.006352 0.006567 0.20% main() 1 0.003928 0.004099 0.004272 0.13% Gravity::get_new_grav_vector() 11 0.002934 0.00347 0.004092 0.13% Amr::coarseTimeStep() 10 0.001021 0.001934 0.002973 0.09% Gravity::get_old_grav_vector() 10 0.001575 0.002204 0.002608 0.08% Castro::finalize_do_advance() 10 0.0005529 0.001028 0.001107 0.03% AmrLevel::FillPatch() 41 0.000793 0.0008332 0.0008661 0.03% Amr::timeStep() 10 0.000171 0.0002183 0.0003832 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000285 0.0003004 0.0003279 0.01% Castro::do_advance_ctu() 10 0.0001461 0.0001604 0.0001713 0.01% Castro::clean_state() 62 0.0001294 0.0001515 0.0001681 0.01% StateDataPhysBCFunct::() 41 9.881e-05 0.0001026 0.0001096 0.00% FillPatchIterator::FillFromLevel0() 41 9.142e-05 0.0001025 0.0001085 0.00% Castro::do_old_sources() 10 8.215e-05 9.364e-05 0.0001056 0.00% FabArray::ParallelCopy() 41 8.728e-05 9.34e-05 0.000101 0.00% Castro::Castro() 1 5.328e-05 7.01e-05 9.107e-05 0.00% Castro::construct_old_source() 50 6.996e-05 8.026e-05 9.017e-05 0.00% Amr::FinalizeInit() 1 4.275e-06 1.513e-05 8.716e-05 0.00% Castro::do_new_sources() 10 5.822e-05 6.462e-05 7.811e-05 0.00% FillPatchSingleLevel 41 6.122e-05 6.628e-05 7.304e-05 0.00% Castro::advance() 10 3.748e-05 4.587e-05 5.904e-05 0.00% Castro::apply_source_to_state() 20 4.188e-05 5.026e-05 5.851e-05 0.00% Castro::subcycle_advance_ctu() 10 4.309e-05 5.131e-05 5.745e-05 0.00% Amr::defBaseLevel() 1 2.894e-05 3.826e-05 4.666e-05 0.00% Castro::construct_old_gravity() 10 3.635e-05 3.961e-05 4.28e-05 0.00% Castro::construct_new_gravity() 10 3.233e-05 3.586e-05 4.09e-05 0.00% Castro::expand_state() 10 2.517e-05 2.674e-05 2.98e-05 0.00% Castro::check_for_nan() 20 2.183e-05 2.477e-05 2.796e-05 0.00% Castro::post_timestep() 10 1.185e-05 1.467e-05 1.619e-05 0.00% Castro::post_init() 1 9.005e-06 1.014e-05 1.345e-05 0.00% Castro::computeNewDt() 9 8.967e-06 9.583e-06 1.026e-05 0.00% Amr::initialInit() 1 1.278e-06 2.75e-06 9.676e-06 0.00% Amr::InitializeInit() 1 2.391e-06 3.14e-06 6.02e-06 0.00% Castro::computeInitialDt() 2 3.444e-06 3.92e-06 4.465e-06 0.00% Amr::init() 1 1.96e-06 2.24e-06 2.672e-06 0.00% Other 261 0.01608 0.018 0.01959 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.262 3.262 3.262 100.00% Amr::coarseTimeStep() 10 3.064 3.064 3.064 93.91% Amr::timeStep() 10 3.051 3.052 3.053 93.59% Castro::advance() 10 3.035 3.036 3.036 93.06% Castro::subcycle_advance_ctu() 10 2.956 2.958 2.961 90.76% Castro::do_advance_ctu() 10 2.956 2.958 2.961 90.75% Castro::construct_ctu_hydro_source() 10 2.219 2.221 2.225 68.21% Gravity::make_radial_gravity() 21 0.3063 0.3129 0.3241 9.94% Gravity::get_new_grav_vector() 11 0.2056 0.2079 0.2097 6.43% AmrLevel::FillPatch() 41 0.1885 0.1994 0.208 6.38% Castro::construct_old_gravity() 10 0.1835 0.1886 0.2001 6.13% Gravity::get_old_grav_vector() 10 0.1828 0.1879 0.1994 6.11% Castro::construct_new_gravity() 10 0.1831 0.1848 0.1867 5.72% Amr::init() 1 0.1862 0.1863 0.1863 5.71% Amr::initialInit() 1 0.1715 0.1716 0.1718 5.26% FillPatchIterator::Initialize 41 0.1605 0.1654 0.1714 5.25% Castro::initialize_do_advance() 10 0.1526 0.1646 0.1693 5.19% check_for_negative_density() 10 0.02587 0.09853 0.1506 4.62% Amr::InitializeInit() 1 0.05714 0.09527 0.1443 4.42% Amr::defBaseLevel() 1 0.05713 0.09527 0.1443 4.42% Castro::clean_state() 62 0.1126 0.119 0.1282 3.93% FillPatchIterator::FillFromLevel0() 41 0.1161 0.1213 0.1281 3.93% FillPatchSingleLevel 41 0.116 0.1212 0.128 3.92% Castro::initData() 1 0.04185 0.07888 0.1267 3.88% Castro::estTimeStep() 21 0.02321 0.07579 0.1171 3.59% Castro::expand_state() 10 0.1031 0.11 0.1148 3.52% Amr::FinalizeInit() 1 0.02733 0.07636 0.1145 3.51% Castro::do_old_sources() 10 0.09507 0.0986 0.1007 3.09% FabArray::ParallelCopy() 41 0.08225 0.08851 0.09887 3.03% amrex::Copy() 193 0.07255 0.08286 0.08977 2.75% Castro::computeInitialDt() 2 0.002461 0.0515 0.08966 2.75% Castro::initialize_advance() 10 0.07165 0.07471 0.07621 2.34% FabArray::setVal() 143 0.06878 0.07124 0.07458 2.29% Castro::computeTemp() 63 0.06147 0.06615 0.07198 2.21% Castro::do_new_sources() 10 0.06284 0.06628 0.07037 2.16% FabArray::ParallelCopy_finish() 41 0.03899 0.0459 0.05931 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04375 0.04759 0.05201 1.59% Castro::reset_internal_energy(Fab) 1008 0.04345 0.04729 0.05168 1.58% Castro::normalize_species() 62 0.04523 0.04762 0.05089 1.56% FabArray::ParallelCopy_nowait() 41 0.03946 0.04251 0.04437 1.36% StateDataPhysBCFunct::() 41 0.0291 0.03267 0.03605 1.10% StateData::FillBoundary(geom) 41 0.02901 0.03257 0.03595 1.10% Castro::construct_new_source() 50 0.02945 0.03099 0.03281 1.01% Gravity::interpolate_monopole_grav() 21 0.02719 0.02746 0.02775 0.85% Castro::construct_new_gravity_source() 10 0.02308 0.02464 0.02643 0.81% Castro::post_init() 1 0.02379 0.02425 0.0245 0.75% Amr::writePlotFile() 2 0.02227 0.02238 0.02252 0.69% Castro::finalize_do_advance() 10 0.01198 0.01684 0.02063 0.63% Castro::post_timestep() 10 0.01509 0.01622 0.01719 0.53% Castro::apply_source_to_state() 20 0.01176 0.0131 0.01397 0.43% FabArray::Saxpy() 20 0.01171 0.01305 0.01393 0.43% FabArray::setDomainBndry() 41 0.007002 0.01042 0.01217 0.37% VisMF::Write(FabArray) 2 0.009199 0.009595 0.01182 0.36% Castro::check_for_nan() 20 0.01029 0.0111 0.01169 0.36% MultiFab::contains_nan() 20 0.01027 0.01108 0.01167 0.36% Castro::Castro() 1 0.009817 0.01068 0.01159 0.36% Castro::construct_old_source() 50 0.008627 0.01026 0.01097 0.34% Castro::construct_old_gravity_source() 10 0.008557 0.01018 0.01089 0.33% Castro::computeNewDt() 9 0.00848 0.008495 0.008507 0.26% Castro::initMFs() 1 0.006274 0.006876 0.007589 0.23% Other 261 0.02595 0.02879 0.03156 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6719 KiB 6726 KiB 6727 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4527 KiB 4529 KiB 4530 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 230 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2788 KiB 2791 KiB 2791 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 244 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 41 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized