Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:02 UTC on 2024-12-30. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015935998 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.362134533 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.371242539 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.370456752 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.380681752 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363023388 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.351591134 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.398403234 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.369326547 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.358515484 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.361697887 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012255267 seconds Ending run at 06:19:06 UTC on 2024-12-30. Run time = 3.895853364 Run time without initialization = 3.707145237 Average number of zones advanced per microsecond: 0.707 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.8955 ... 3.8958 ... 3.8959 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1197 2.3646 2.5469 65.37% check_for_negative_density() 10 0.07511 0.2605 0.5103 13.10% Gravity::make_radial_gravity() 21 0.3036 0.3148 0.3351 8.60% amrex::Copy() 193 0.09828 0.1152 0.125 3.21% Castro::initData() 1 0.03783 0.07226 0.1135 2.91% Castro::estTimeStep() 21 0.02314 0.06977 0.1078 2.77% FabArray::setVal() 143 0.09744 0.09955 0.1019 2.61% FabArray::ParallelCopy_nowait() 41 0.06095 0.064 0.06559 1.68% FabArray::ParallelCopy_finish() 41 0.05123 0.05521 0.05976 1.53% FillPatchIterator::Initialize 41 0.04435 0.05307 0.0588 1.51% Castro::normalize_species() 62 0.04831 0.05194 0.05652 1.45% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05172 0.05367 1.38% StateData::FillBoundary(geom) 41 0.03481 0.03936 0.0431 1.11% Castro::construct_new_gravity_source() 10 0.03074 0.0329 0.03553 0.91% Castro::initialize_do_advance() 10 0.0227 0.02634 0.02961 0.76% Gravity::interpolate_monopole_grav() 21 0.02721 0.02761 0.02812 0.72% Castro::computeTemp() 63 0.01931 0.02001 0.02174 0.56% FabArray::Saxpy() 20 0.01737 0.0191 0.02117 0.54% FabArray::setDomainBndry() 41 0.016 0.0185 0.02071 0.53% Castro::initialize_advance() 10 0.01496 0.01645 0.01776 0.46% MultiFab::contains_nan() 20 0.01225 0.01457 0.01712 0.44% Castro::construct_old_gravity_source() 10 0.01538 0.01627 0.01682 0.43% VisMF::Write(FabArray) 2 0.009735 0.01143 0.01516 0.39% Amr::writePlotFile() 2 0.008879 0.01278 0.01441 0.37% Amr::InitAmr() 1 0.0001803 0.0016 0.01138 0.29% DistributionMapping::LeastUsedCPUs() 1 1.964e-05 0.009804 0.01121 0.29% Castro::construct_new_source() 50 0.007612 0.008715 0.009866 0.25% Castro::initMFs() 1 0.006171 0.006573 0.008571 0.22% main() 1 0.006824 0.00712 0.007267 0.19% Gravity::get_new_grav_vector() 11 0.00483 0.005284 0.00603 0.15% Gravity::get_old_grav_vector() 10 0.002502 0.003068 0.003603 0.09% Amr::coarseTimeStep() 10 0.001809 0.002281 0.003379 0.09% Castro::finalize_do_advance() 10 0.0013 0.001329 0.001392 0.04% AmrLevel::FillPatch() 41 0.0009245 0.001072 0.00117 0.03% Amr::timeStep() 10 0.0001485 0.0002639 0.000518 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003113 0.0003272 0.0003442 0.01% Castro::clean_state() 62 0.0001848 0.0002018 0.0002333 0.01% Castro::do_advance_ctu() 10 0.0001854 0.0002055 0.0002279 0.01% FabArray::ParallelCopy() 41 0.0001189 0.0001362 0.000166 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001332 0.0001449 0.0001642 0.00% Castro::do_old_sources() 10 0.0001038 0.0001293 0.0001559 0.00% StateDataPhysBCFunct::() 41 0.0001168 0.0001305 0.0001403 0.00% Castro::construct_old_source() 50 8.683e-05 0.0001071 0.0001288 0.00% Castro::Castro() 1 4.907e-05 8.554e-05 0.0001137 0.00% FillPatchSingleLevel 41 8.326e-05 9.34e-05 0.0001038 0.00% Castro::apply_source_to_state() 20 4.744e-05 6.992e-05 8.249e-05 0.00% Castro::do_new_sources() 10 6.645e-05 7.644e-05 8.209e-05 0.00% Amr::FinalizeInit() 1 3.526e-06 1.305e-05 7.654e-05 0.00% Castro::subcycle_advance_ctu() 10 5.576e-05 6.595e-05 7.651e-05 0.00% Castro::expand_state() 10 3.677e-05 4.721e-05 6.375e-05 0.00% Castro::construct_old_gravity() 10 4.19e-05 4.762e-05 6.185e-05 0.00% Castro::advance() 10 4.21e-05 5.379e-05 6.149e-05 0.00% Amr::defBaseLevel() 1 2.563e-05 4.2e-05 5.42e-05 0.00% Castro::construct_new_gravity() 10 3.09e-05 4.033e-05 5.202e-05 0.00% Castro::check_for_nan() 20 2.856e-05 3.107e-05 3.257e-05 0.00% Castro::post_timestep() 10 1.474e-05 1.958e-05 3.005e-05 0.00% Castro::computeNewDt() 9 8.933e-06 9.926e-06 1.069e-05 0.00% Castro::post_init() 1 7.544e-06 8.568e-06 1.045e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.602e-06 4.375e-06 5.774e-06 0.00% Amr::InitializeInit() 1 2.708e-06 3.476e-06 5.582e-06 0.00% Amr::init() 1 1.722e-06 2.422e-06 4.18e-06 0.00% Castro::computeInitialDt() 2 3.291e-06 3.577e-06 4.082e-06 0.00% Amr::initialInit() 1 1.231e-06 1.525e-06 2.085e-06 0.00% Other 258 0.01684 0.0185 0.02025 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.895 3.896 3.896 100.00% Amr::coarseTimeStep() 10 3.688 3.688 3.688 94.66% Amr::timeStep() 10 3.674 3.675 3.676 94.35% Castro::advance() 10 3.658 3.658 3.659 93.91% Castro::subcycle_advance_ctu() 10 3.549 3.553 3.559 91.34% Castro::do_advance_ctu() 10 3.549 3.553 3.558 91.34% Castro::construct_ctu_hydro_source() 10 2.646 2.65 2.657 68.21% check_for_negative_density() 10 0.07511 0.2605 0.5103 13.10% Gravity::make_radial_gravity() 21 0.3264 0.3382 0.3584 9.20% AmrLevel::FillPatch() 41 0.252 0.2802 0.2988 7.67% FillPatchIterator::Initialize 41 0.2154 0.2308 0.2453 6.30% Castro::initialize_do_advance() 10 0.2054 0.226 0.2416 6.20% Gravity::get_new_grav_vector() 11 0.2288 0.2306 0.2323 5.96% Castro::construct_old_gravity() 10 0.2011 0.2096 0.2262 5.81% Gravity::get_old_grav_vector() 10 0.2 0.2086 0.2255 5.79% Castro::construct_new_gravity() 10 0.2062 0.2083 0.2097 5.38% Amr::init() 1 0.1772 0.1869 0.1884 4.83% Amr::initialInit() 1 0.1611 0.1708 0.1723 4.42% Castro::expand_state() 10 0.1333 0.1553 0.1685 4.32% FillPatchIterator::FillFromLevel0() 41 0.1528 0.1592 0.1684 4.32% FillPatchSingleLevel 41 0.1527 0.1591 0.1683 4.32% Amr::InitializeInit() 1 0.05925 0.1023 0.146 3.75% Amr::defBaseLevel() 1 0.05924 0.1023 0.1459 3.75% Castro::do_old_sources() 10 0.136 0.1387 0.14 3.59% Castro::clean_state() 62 0.1244 0.1305 0.1348 3.46% amrex::Copy() 193 0.09828 0.1152 0.125 3.21% FabArray::ParallelCopy() 41 0.116 0.1195 0.1249 3.21% Castro::initData() 1 0.04196 0.07624 0.117 3.00% Castro::estTimeStep() 21 0.02314 0.06977 0.1078 2.77% Castro::initialize_advance() 10 0.09465 0.1002 0.104 2.67% Amr::FinalizeInit() 1 0.02578 0.06847 0.1033 2.65% FabArray::setVal() 143 0.09744 0.09955 0.1019 2.61% Castro::do_new_sources() 10 0.07807 0.08235 0.08574 2.20% Castro::computeInitialDt() 2 0.002094 0.04439 0.07922 2.03% Castro::computeTemp() 63 0.06846 0.07205 0.07563 1.94% FabArray::ParallelCopy_nowait() 41 0.06107 0.06412 0.0657 1.69% FabArray::ParallelCopy_finish() 41 0.05123 0.05521 0.05976 1.53% Castro::normalize_species() 62 0.04831 0.05194 0.05652 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04915 0.05205 0.054 1.39% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05172 0.05367 1.38% Castro::construct_new_source() 50 0.03854 0.04162 0.04479 1.15% StateDataPhysBCFunct::() 41 0.03492 0.0395 0.04323 1.11% StateData::FillBoundary(geom) 41 0.03481 0.03936 0.0431 1.11% Castro::construct_new_gravity_source() 10 0.03074 0.0329 0.03553 0.91% Amr::writePlotFile() 2 0.02841 0.02852 0.0289 0.74% Gravity::interpolate_monopole_grav() 21 0.02721 0.02761 0.02812 0.72% Castro::finalize_do_advance() 10 0.0134 0.01773 0.02402 0.62% Castro::post_init() 1 0.02332 0.02345 0.0237 0.61% Castro::apply_source_to_state() 20 0.01742 0.01917 0.02125 0.55% FabArray::Saxpy() 20 0.01737 0.0191 0.02117 0.54% FabArray::setDomainBndry() 41 0.016 0.0185 0.02071 0.53% Castro::post_timestep() 10 0.01593 0.01702 0.01759 0.45% Castro::check_for_nan() 20 0.01228 0.0146 0.01715 0.44% MultiFab::contains_nan() 20 0.01225 0.01457 0.01712 0.44% Castro::construct_old_source() 50 0.01547 0.01637 0.01694 0.43% Castro::construct_old_gravity_source() 10 0.01538 0.01627 0.01682 0.43% VisMF::Write(FabArray) 2 0.009735 0.01143 0.01516 0.39% Castro::Castro() 1 0.01031 0.01079 0.01162 0.30% Amr::InitAmr() 1 0.0001833 0.001604 0.0114 0.29% DistributionMapping::SFCProcessorMapDoIt() 1 2.761e-05 0.009817 0.01123 0.29% DistributionMapping::LeastUsedCPUs() 1 1.964e-05 0.009804 0.01121 0.29% Castro::computeNewDt() 9 0.008972 0.008996 0.009021 0.23% Castro::initMFs() 1 0.006171 0.006573 0.008571 0.22% Other 258 0.02772 0.03046 0.03364 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 23 B 26 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 11 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8640 KiB 8648 KiB 8650 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6782 KiB 6788 KiB 6791 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7113 KiB 7121 KiB 7123 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4556 KiB 4564 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 241 KiB 272 KiB 292 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 213 KiB 221 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 47 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2022 KiB 2024 KiB 2024 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 68 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized