Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:18:42 UTC on 2024-12-31. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01969807 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.398275762 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.363406328 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.354785625 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.406561702 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.388095562 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.355239955 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.354967846 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.356558799 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.357448792 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.35853342 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012750828 seconds Ending run at 06:18:46 UTC on 2024-12-31. Run time = 3.912689982 Run time without initialization = 3.715297401 Average number of zones advanced per microsecond: 0.706 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.9116 ... 3.9120 ... 3.9128 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1402 2.3828 2.6153 66.84% check_for_negative_density() 10 0.007365 0.2443 0.4938 12.62% Gravity::make_radial_gravity() 21 0.2949 0.3194 0.3418 8.74% amrex::Copy() 193 0.09557 0.1155 0.1304 3.33% Castro::initData() 1 0.0374 0.07245 0.116 2.97% FabArray::setVal() 143 0.09347 0.1025 0.1088 2.78% Castro::estTimeStep() 21 0.02974 0.07076 0.1007 2.57% FabArray::ParallelCopy_finish() 41 0.05668 0.06388 0.08374 2.14% FabArray::ParallelCopy_nowait() 41 0.0551 0.06237 0.06776 1.73% FillPatchIterator::Initialize 41 0.04769 0.05516 0.06118 1.56% Castro::reset_internal_energy(Fab) 1008 0.04817 0.05111 0.05346 1.37% StateData::FillBoundary(geom) 41 0.03576 0.04142 0.04983 1.27% Castro::normalize_species() 62 0.0462 0.04691 0.04742 1.21% Castro::construct_new_gravity_source() 10 0.02987 0.03242 0.03554 0.91% Castro::initialize_do_advance() 10 0.02369 0.0259 0.02834 0.72% Gravity::interpolate_monopole_grav() 21 0.02706 0.02724 0.02741 0.70% FabArray::Saxpy() 20 0.01808 0.01969 0.0215 0.55% FabArray::setDomainBndry() 41 0.01794 0.01942 0.02122 0.54% Castro::computeTemp() 63 0.01852 0.02007 0.02104 0.54% Amr::writePlotFile() 2 0.0102 0.01445 0.01974 0.50% VisMF::Write(FabArray) 2 0.0107 0.0134 0.01714 0.44% MultiFab::contains_nan() 20 0.01297 0.01525 0.0169 0.43% Castro::initialize_advance() 10 0.01493 0.01591 0.01674 0.43% Castro::construct_old_gravity_source() 10 0.01512 0.01608 0.01636 0.42% Castro::initMFs() 1 0.008929 0.009671 0.01114 0.28% Castro::construct_new_source() 50 0.007217 0.008067 0.00891 0.23% main() 1 0.006819 0.007166 0.00797 0.20% Gravity::get_new_grav_vector() 11 0.004126 0.005351 0.006006 0.15% Gravity::get_old_grav_vector() 10 0.002517 0.002962 0.003449 0.09% Amr::coarseTimeStep() 10 0.00103 0.00179 0.002878 0.07% AmrLevel::FillPatch() 41 0.001046 0.001244 0.0015 0.04% Castro::finalize_do_advance() 10 0.001258 0.001305 0.001335 0.03% Amr::timeStep() 10 0.000196 0.0002437 0.0004145 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003291 0.0003416 0.000374 0.01% Castro::clean_state() 62 0.000187 0.0002071 0.0002416 0.01% Castro::do_advance_ctu() 10 0.0001661 0.0002049 0.000237 0.01% Castro::Castro() 1 7.833e-05 0.0001334 0.0001738 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001362 0.0001481 0.0001592 0.00% FabArray::ParallelCopy() 41 0.0001227 0.0001362 0.0001584 0.00% StateDataPhysBCFunct::() 41 0.0001202 0.0001343 0.0001489 0.00% Castro::do_old_sources() 10 9.249e-05 0.000124 0.0001454 0.00% Castro::construct_old_source() 50 9.069e-05 0.0001076 0.0001247 0.00% FillPatchSingleLevel 41 9.346e-05 0.0001009 0.0001131 0.00% Castro::do_new_sources() 10 7.311e-05 7.983e-05 9.022e-05 0.00% Castro::apply_source_to_state() 20 5.509e-05 7.266e-05 8.801e-05 0.00% Amr::FinalizeInit() 1 4.097e-06 1.494e-05 7.998e-05 0.00% Castro::subcycle_advance_ctu() 10 5.538e-05 6.251e-05 7.184e-05 0.00% Castro::expand_state() 10 2.87e-05 4.269e-05 6.414e-05 0.00% Castro::advance() 10 4.794e-05 5.382e-05 6.036e-05 0.00% Castro::construct_old_gravity() 10 4.043e-05 4.811e-05 5.908e-05 0.00% Castro::construct_new_gravity() 10 3.312e-05 4.349e-05 5.449e-05 0.00% Amr::defBaseLevel() 1 3.179e-05 4.57e-05 5.416e-05 0.00% Castro::check_for_nan() 20 2.773e-05 3.092e-05 3.49e-05 0.00% Castro::post_timestep() 10 1.461e-05 1.838e-05 2.28e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.813e-06 1.059e-05 1.263e-05 0.00% Castro::computeNewDt() 9 8.892e-06 1.057e-05 1.23e-05 0.00% Castro::post_init() 1 8.702e-06 1.023e-05 1.189e-05 0.00% Amr::InitializeInit() 1 2.851e-06 3.805e-06 6.752e-06 0.00% Amr::init() 1 2.442e-06 3.47e-06 6.561e-06 0.00% Castro::computeInitialDt() 2 3.148e-06 4.392e-06 5.405e-06 0.00% Amr::initialInit() 1 1.402e-06 1.845e-06 2.729e-06 0.00% Other 260 0.02028 0.02354 0.02585 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.912 3.912 3.913 100.00% Amr::coarseTimeStep() 10 3.695 3.695 3.695 94.43% Amr::timeStep() 10 3.682 3.683 3.684 94.15% Castro::advance() 10 3.666 3.667 3.668 93.73% Castro::subcycle_advance_ctu() 10 3.558 3.562 3.571 91.25% Castro::do_advance_ctu() 10 3.558 3.562 3.571 91.25% Castro::construct_ctu_hydro_source() 10 2.646 2.651 2.658 67.92% check_for_negative_density() 10 0.007365 0.2443 0.4938 12.62% Gravity::make_radial_gravity() 21 0.3185 0.342 0.3633 9.28% AmrLevel::FillPatch() 41 0.2651 0.2922 0.3143 8.03% FillPatchIterator::Initialize 41 0.2275 0.2429 0.2568 6.56% Castro::initialize_do_advance() 10 0.2166 0.2364 0.2548 6.51% Castro::construct_old_gravity() 10 0.1947 0.2152 0.2341 5.98% Gravity::get_old_grav_vector() 10 0.1938 0.2143 0.2334 5.97% Gravity::get_new_grav_vector() 11 0.2286 0.2299 0.2313 5.91% Castro::construct_new_gravity() 10 0.2013 0.2031 0.2046 5.23% Amr::init() 1 0.1968 0.197 0.197 5.04% Castro::expand_state() 10 0.1434 0.1647 0.1847 4.72% FillPatchIterator::FillFromLevel0() 41 0.1591 0.1683 0.1811 4.63% FillPatchSingleLevel 41 0.159 0.1682 0.1809 4.62% Amr::initialInit() 1 0.1762 0.1769 0.1771 4.53% Amr::InitializeInit() 1 0.06656 0.1016 0.1463 3.74% Amr::defBaseLevel() 1 0.06656 0.1016 0.1463 3.74% Castro::do_old_sources() 10 0.1357 0.1397 0.141 3.60% FabArray::ParallelCopy() 41 0.1223 0.1265 0.1391 3.56% amrex::Copy() 193 0.09557 0.1155 0.1304 3.33% Castro::clean_state() 62 0.121 0.1252 0.1278 3.27% Castro::initData() 1 0.04216 0.07708 0.12 3.07% Amr::FinalizeInit() 1 0.02989 0.07529 0.1104 2.82% FabArray::setVal() 143 0.09347 0.1025 0.1088 2.78% Castro::initialize_advance() 10 0.09146 0.09985 0.1042 2.66% Castro::estTimeStep() 21 0.02974 0.07076 0.1007 2.57% FabArray::ParallelCopy_finish() 41 0.05668 0.06388 0.08374 2.14% Castro::do_new_sources() 10 0.07495 0.07954 0.08369 2.14% Castro::computeInitialDt() 2 0.002157 0.04683 0.08192 2.09% Castro::computeTemp() 63 0.06702 0.07153 0.07483 1.91% FabArray::ParallelCopy_nowait() 41 0.05525 0.0625 0.06788 1.73% Castro::reset_internal_energy(MultiFab) 63 0.0485 0.05146 0.05379 1.37% Castro::reset_internal_energy(Fab) 1008 0.04817 0.05111 0.05346 1.37% StateDataPhysBCFunct::() 41 0.03589 0.04155 0.04998 1.28% StateData::FillBoundary(geom) 41 0.03576 0.04142 0.04983 1.27% Castro::normalize_species() 62 0.0462 0.04691 0.04742 1.21% Castro::construct_new_source() 50 0.03732 0.04049 0.04431 1.13% Castro::construct_new_gravity_source() 10 0.02987 0.03242 0.03554 0.91% Amr::writePlotFile() 2 0.03271 0.0329 0.03361 0.86% Castro::post_init() 1 0.02747 0.02802 0.02822 0.72% Gravity::interpolate_monopole_grav() 21 0.02706 0.02724 0.02741 0.70% Castro::finalize_do_advance() 10 0.01142 0.01667 0.02245 0.57% Castro::apply_source_to_state() 20 0.01815 0.01976 0.02157 0.55% FabArray::Saxpy() 20 0.01808 0.01969 0.0215 0.55% FabArray::setDomainBndry() 41 0.01794 0.01942 0.02122 0.54% Castro::Castro() 1 0.01497 0.0166 0.01792 0.46% VisMF::Write(FabArray) 2 0.0107 0.0134 0.01714 0.44% Castro::check_for_nan() 20 0.01299 0.01528 0.01693 0.43% MultiFab::contains_nan() 20 0.01297 0.01525 0.0169 0.43% Castro::construct_old_source() 50 0.01522 0.01618 0.01647 0.42% Castro::construct_old_gravity_source() 10 0.01512 0.01608 0.01636 0.42% Castro::post_timestep() 10 0.01541 0.01594 0.01633 0.42% Castro::initMFs() 1 0.008929 0.009671 0.01114 0.28% Castro::computeNewDt() 9 0.008564 0.008582 0.008601 0.22% AmrLevel::AmrLevel(dm) 1 0.007231 0.007689 0.008196 0.21% Other 260 0.02605 0.03022 0.0332 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8653 KiB 8662 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6765 KiB 6770 KiB 6773 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4543 KiB 4548 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 253 KiB 285 KiB 311 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 21 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2811 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 207 KiB 222 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 49 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 70 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized