Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:19:36 UTC on 2025-01-01. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 24.12-3-gf4ce75f7 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019559703 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.423091342 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.377266884 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.358154507 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.377646543 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355782934 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.353552388 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.352484153 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.35268723 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.354985313 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.361619063 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012341078 seconds Ending run at 06:19:40 UTC on 2025-01-01. Run time = 3.870304534 Run time without initialization = 3.687524261 Average number of zones advanced per microsecond: 0.711 Average number of zones advanced per microsecond per rank: 0.089 TinyProfiler total time across processes [min...avg...max]: 3.8697 ... 3.8700 ... 3.8703 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1717 2.4079 2.5767 66.58% check_for_negative_density() 10 0.01199 0.1846 0.4214 10.89% Gravity::make_radial_gravity() 21 0.292 0.3074 0.3267 8.44% amrex::Copy() 193 0.1076 0.1238 0.1362 3.52% FabArray::setVal() 143 0.09716 0.1056 0.11 2.84% Castro::initData() 1 0.03722 0.07237 0.1024 2.65% Castro::estTimeStep() 21 0.02094 0.05597 0.08857 2.29% FabArray::ParallelCopy_nowait() 41 0.06052 0.06652 0.07127 1.84% FabArray::ParallelCopy_finish() 41 0.05724 0.06112 0.06865 1.77% FillPatchIterator::Initialize 41 0.04994 0.05672 0.06238 1.61% Castro::reset_internal_energy(Fab) 1008 0.0487 0.05152 0.05531 1.43% Castro::normalize_species() 62 0.0459 0.04756 0.04982 1.29% StateData::FillBoundary(geom) 41 0.03719 0.04167 0.04709 1.22% Castro::construct_new_gravity_source() 10 0.02997 0.03275 0.03547 0.92% Castro::initialize_do_advance() 10 0.02454 0.02679 0.03024 0.78% Gravity::interpolate_monopole_grav() 21 0.02699 0.02741 0.02792 0.72% FabArray::Saxpy() 20 0.01889 0.0206 0.02225 0.57% FabArray::setDomainBndry() 41 0.01721 0.02056 0.02214 0.57% Castro::computeTemp() 63 0.01847 0.01997 0.02127 0.55% Castro::initialize_advance() 10 0.016 0.01664 0.0171 0.44% Castro::construct_old_gravity_source() 10 0.01597 0.01665 0.01709 0.44% VisMF::Write(FabArray) 2 0.01189 0.01342 0.01664 0.43% MultiFab::contains_nan() 20 0.01193 0.01419 0.0158 0.41% Amr::writePlotFile() 2 0.009821 0.01304 0.0146 0.38% Castro::initMFs() 1 0.008631 0.009361 0.01075 0.28% Castro::construct_new_source() 50 0.007171 0.008241 0.009133 0.24% main() 1 0.006729 0.00701 0.007362 0.19% Gravity::get_new_grav_vector() 11 0.004945 0.005654 0.006386 0.17% Gravity::get_old_grav_vector() 10 0.002544 0.003135 0.003825 0.10% Amr::coarseTimeStep() 10 0.002073 0.002937 0.003593 0.09% Castro::finalize_do_advance() 10 0.001302 0.001397 0.001721 0.04% AmrLevel::FillPatch() 41 0.001032 0.001277 0.001612 0.04% Amr::timeStep() 10 0.000163 0.0002594 0.0005903 0.02% Castro::reset_internal_energy(MultiFab) 63 0.000341 0.0003628 0.0003996 0.01% Castro::do_advance_ctu() 10 0.0001789 0.000209 0.0002311 0.01% Castro::clean_state() 62 0.000181 0.0002066 0.0002186 0.01% Castro::Castro() 1 6.192e-05 0.0001269 0.0001935 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001377 0.0001502 0.0001727 0.00% StateDataPhysBCFunct::() 41 0.0001243 0.0001462 0.0001693 0.00% Castro::do_old_sources() 10 0.0001023 0.0001277 0.0001628 0.00% FabArray::ParallelCopy() 41 0.000121 0.0001358 0.0001457 0.00% Castro::construct_old_source() 50 9.726e-05 0.0001136 0.0001266 0.00% Amr::FinalizeInit() 1 5.011e-06 2.024e-05 0.0001061 0.00% FillPatchSingleLevel 41 8.982e-05 9.787e-05 0.0001034 0.00% Castro::apply_source_to_state() 20 5.951e-05 7.673e-05 9.099e-05 0.00% Castro::subcycle_advance_ctu() 10 5.507e-05 7.258e-05 8.976e-05 0.00% Castro::do_new_sources() 10 6.426e-05 7.639e-05 8.51e-05 0.00% Castro::advance() 10 4.252e-05 5.906e-05 7.42e-05 0.00% Amr::defBaseLevel() 1 3.319e-05 5.028e-05 6.31e-05 0.00% Castro::construct_old_gravity() 10 4.131e-05 4.822e-05 5.969e-05 0.00% Castro::expand_state() 10 3.802e-05 4.611e-05 5.404e-05 0.00% Castro::construct_new_gravity() 10 3.452e-05 4.199e-05 5.008e-05 0.00% Castro::check_for_nan() 20 2.493e-05 2.912e-05 3.322e-05 0.00% Castro::post_timestep() 10 1.422e-05 1.899e-05 2.597e-05 0.00% Castro::post_init() 1 1.014e-05 1.285e-05 2.186e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.975e-06 1.001e-05 1.241e-05 0.00% Castro::computeNewDt() 9 9.586e-06 1.065e-05 1.163e-05 0.00% Castro::computeInitialDt() 2 4.14e-06 4.888e-06 6.25e-06 0.00% Amr::InitializeInit() 1 2.786e-06 3.96e-06 5.974e-06 0.00% Amr::init() 1 2.903e-06 3.498e-06 5.322e-06 0.00% Amr::initialInit() 1 1.334e-06 2.205e-06 2.962e-06 0.00% Other 260 0.02052 0.0237 0.02576 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.87 3.87 3.87 100.00% Amr::coarseTimeStep() 10 3.668 3.668 3.668 94.77% Amr::timeStep() 10 3.654 3.655 3.656 94.46% Castro::advance() 10 3.639 3.639 3.64 94.04% Castro::subcycle_advance_ctu() 10 3.528 3.531 3.535 91.33% Castro::do_advance_ctu() 10 3.528 3.53 3.535 91.33% Castro::construct_ctu_hydro_source() 10 2.61 2.616 2.622 67.73% check_for_negative_density() 10 0.01199 0.1846 0.4214 10.89% Gravity::make_radial_gravity() 21 0.3198 0.3342 0.3529 9.12% AmrLevel::FillPatch() 41 0.2772 0.2989 0.3197 8.26% FillPatchIterator::Initialize 41 0.234 0.2473 0.2611 6.75% Castro::initialize_do_advance() 10 0.2248 0.2394 0.2518 6.51% Gravity::get_new_grav_vector() 11 0.2329 0.2348 0.2368 6.12% Castro::construct_old_gravity() 10 0.1936 0.2056 0.2203 5.69% Gravity::get_old_grav_vector() 10 0.1927 0.2047 0.2195 5.67% Castro::construct_new_gravity() 10 0.2048 0.2071 0.2091 5.40% Castro::expand_state() 10 0.1487 0.1669 0.1832 4.73% Amr::init() 1 0.1822 0.1824 0.1824 4.71% FillPatchIterator::FillFromLevel0() 41 0.1628 0.17 0.1771 4.58% FillPatchSingleLevel 41 0.1627 0.1698 0.1769 4.57% Amr::initialInit() 1 0.1625 0.1626 0.1627 4.20% Castro::do_old_sources() 10 0.1416 0.1444 0.1484 3.83% amrex::Copy() 193 0.1076 0.1238 0.1362 3.52% Castro::clean_state() 62 0.1219 0.1262 0.1323 3.42% Amr::InitializeInit() 1 0.06465 0.101 0.1309 3.38% Amr::defBaseLevel() 1 0.06465 0.101 0.1309 3.38% FabArray::ParallelCopy() 41 0.1253 0.1279 0.1302 3.37% FabArray::setVal() 143 0.09716 0.1056 0.11 2.84% Castro::initData() 1 0.04211 0.0771 0.1077 2.78% Castro::initialize_advance() 10 0.09919 0.1035 0.106 2.74% Amr::FinalizeInit() 1 0.03172 0.06166 0.09803 2.53% Castro::estTimeStep() 21 0.02094 0.05597 0.08857 2.29% Castro::do_new_sources() 10 0.07556 0.08028 0.08445 2.18% Castro::computeTemp() 63 0.06752 0.07186 0.07692 1.99% FabArray::ParallelCopy_nowait() 41 0.06065 0.06666 0.0714 1.84% FabArray::ParallelCopy_finish() 41 0.05724 0.06112 0.06865 1.77% Castro::computeInitialDt() 2 0.002263 0.03221 0.06855 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04905 0.05188 0.05565 1.44% Castro::reset_internal_energy(Fab) 1008 0.0487 0.05152 0.05531 1.43% Castro::normalize_species() 62 0.0459 0.04756 0.04982 1.29% StateDataPhysBCFunct::() 41 0.03732 0.04181 0.04724 1.22% StateData::FillBoundary(geom) 41 0.03719 0.04167 0.04709 1.22% Castro::construct_new_source() 50 0.03714 0.04099 0.04446 1.15% Castro::construct_new_gravity_source() 10 0.02997 0.03275 0.03547 0.92% Amr::writePlotFile() 2 0.03212 0.0322 0.03238 0.84% Castro::post_init() 1 0.02877 0.02894 0.02908 0.75% Gravity::interpolate_monopole_grav() 21 0.02699 0.02741 0.02792 0.72% Castro::finalize_do_advance() 10 0.01125 0.01649 0.02309 0.60% Castro::apply_source_to_state() 20 0.01897 0.02068 0.02234 0.58% FabArray::Saxpy() 20 0.01889 0.0206 0.02225 0.57% FabArray::setDomainBndry() 41 0.01721 0.02056 0.02214 0.57% Castro::Castro() 1 0.01508 0.0161 0.01723 0.45% Castro::construct_old_source() 50 0.01606 0.01676 0.01722 0.44% Castro::construct_old_gravity_source() 10 0.01597 0.01665 0.01709 0.44% VisMF::Write(FabArray) 2 0.01189 0.01342 0.01664 0.43% Castro::post_timestep() 10 0.01482 0.01577 0.01651 0.43% Castro::check_for_nan() 20 0.01196 0.01422 0.01583 0.41% MultiFab::contains_nan() 20 0.01193 0.01419 0.0158 0.41% Castro::initMFs() 1 0.008631 0.009361 0.01075 0.28% Castro::computeNewDt() 9 0.008669 0.008686 0.0087 0.22% AmrLevel::AmrLevel(dm) 1 0.007173 0.007502 0.008187 0.21% Other 260 0.02658 0.03053 0.03323 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 23 B 28 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8663 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6787 KiB 6792 KiB 6793 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4557 KiB 4559 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 270 KiB 293 KiB 317 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 22 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2820 KiB 2821 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 210 KiB 220 KiB 232 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 48 KiB 50 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 67 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized