Initializing AMReX (24.12-14-gb3f67385e62f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (24.12-14-gb3f67385e62f) initialized Starting run at 06:18:47 UTC on 2025-01-02. Successfully read inputs file ... Castro git describe: 24.12-8-g34d2b9a4b AMReX git describe: 24.12-14-gb3f67385e Microphysics git describe: 25.01 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015000619 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.331755813 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.318389274 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.308125931 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305917343 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357462515 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.299633672 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.285617469 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.285848304 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.283905779 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307300084 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008955125 seconds Ending run at 06:18:50 UTC on 2025-01-02. Run time = 3.275764199 Run time without initialization = 3.098085082 Average number of zones advanced per microsecond: 0.846 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2750 ... 3.2753 ... 3.2758 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0196 2.1131 2.1737 66.35% Gravity::make_radial_gravity() 21 0.2916 0.3008 0.3114 9.51% check_for_negative_density() 10 0.0374 0.1017 0.1971 6.02% Castro::initData() 1 0.03699 0.07295 0.1106 3.38% Castro::estTimeStep() 21 0.02577 0.06876 0.1095 3.34% amrex::Copy() 193 0.07806 0.08332 0.08973 2.74% FabArray::setVal() 143 0.06698 0.07133 0.07647 2.33% FabArray::ParallelCopy_finish() 41 0.03691 0.0446 0.05558 1.70% Castro::reset_internal_energy(Fab) 1008 0.0442 0.04612 0.04883 1.49% Castro::normalize_species() 62 0.04518 0.04622 0.04788 1.46% FabArray::ParallelCopy_nowait() 41 0.03954 0.04293 0.04481 1.37% StateData::FillBoundary(geom) 41 0.02996 0.03344 0.03692 1.13% FillPatchIterator::Initialize 41 0.02841 0.03391 0.03604 1.10% Gravity::interpolate_monopole_grav() 21 0.02697 0.02745 0.02779 0.85% Castro::construct_new_gravity_source() 10 0.0233 0.0253 0.02764 0.84% Castro::computeTemp() 63 0.01729 0.01827 0.01912 0.58% Castro::initialize_do_advance() 10 0.01639 0.01771 0.01873 0.57% Castro::initialize_advance() 10 0.01041 0.01242 0.0146 0.45% FabArray::Saxpy() 20 0.01208 0.01315 0.01398 0.43% VisMF::Write(FabArray) 2 0.009339 0.009977 0.013 0.40% MultiFab::contains_nan() 20 0.0105 0.01142 0.01267 0.39% Amr::writePlotFile() 2 0.008367 0.01152 0.01222 0.37% FabArray::setDomainBndry() 41 0.007701 0.01061 0.01189 0.36% Castro::construct_old_gravity_source() 10 0.009548 0.01027 0.01074 0.33% Castro::initMFs() 1 0.006396 0.006987 0.00785 0.24% Castro::construct_new_source() 50 0.005821 0.006069 0.006311 0.19% main() 1 0.003898 0.004244 0.004749 0.14% Gravity::get_new_grav_vector() 11 0.002924 0.003556 0.003969 0.12% Gravity::get_old_grav_vector() 10 0.001664 0.002225 0.002976 0.09% Amr::coarseTimeStep() 10 0.001009 0.001819 0.002411 0.07% AmrLevel::FillPatch() 41 0.001193 0.001404 0.002118 0.06% Castro::finalize_do_advance() 10 0.00114 0.00119 0.001256 0.04% Amr::timeStep() 10 0.000179 0.0002261 0.0004067 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002788 0.0002962 0.0003122 0.01% Castro::do_advance_ctu() 10 0.0001375 0.0001631 0.0001798 0.01% Castro::clean_state() 62 0.000147 0.0001564 0.0001644 0.01% StateDataPhysBCFunct::() 41 0.0001016 0.0001083 0.0001192 0.00% FillPatchIterator::FillFromLevel0() 41 9.887e-05 0.0001107 0.0001167 0.00% Castro::do_old_sources() 10 7.824e-05 9.61e-05 0.0001108 0.00% FabArray::ParallelCopy() 41 8.359e-05 9.637e-05 0.00011 0.00% Castro::construct_old_source() 50 6.968e-05 7.859e-05 8.944e-05 0.00% Amr::FinalizeInit() 1 3.807e-06 1.506e-05 8.765e-05 0.00% Castro::Castro() 1 5.565e-05 7.067e-05 8.457e-05 0.00% Castro::do_new_sources() 10 5.489e-05 6.162e-05 7.212e-05 0.00% FillPatchSingleLevel 41 6.197e-05 6.612e-05 7.027e-05 0.00% Castro::subcycle_advance_ctu() 10 4.437e-05 5.438e-05 6.381e-05 0.00% Castro::advance() 10 4.128e-05 4.766e-05 6.14e-05 0.00% Castro::apply_source_to_state() 20 4.221e-05 5.211e-05 5.827e-05 0.00% Amr::defBaseLevel() 1 3.133e-05 4.036e-05 5.251e-05 0.00% Castro::construct_old_gravity() 10 3.435e-05 3.911e-05 4.637e-05 0.00% Castro::construct_new_gravity() 10 3.197e-05 3.665e-05 4.339e-05 0.00% Castro::check_for_nan() 20 2.268e-05 2.547e-05 3.387e-05 0.00% Castro::expand_state() 10 2.106e-05 2.845e-05 3.387e-05 0.00% Castro::post_timestep() 10 1.438e-05 1.589e-05 2.008e-05 0.00% Castro::post_init() 1 8.874e-06 1.093e-05 1.322e-05 0.00% Castro::computeNewDt() 9 8.308e-06 9.594e-06 1.073e-05 0.00% Amr::InitializeInit() 1 2.63e-06 3.368e-06 5.855e-06 0.00% Castro::computeInitialDt() 2 3.248e-06 3.703e-06 4.233e-06 0.00% Amr::init() 1 1.972e-06 2.349e-06 2.886e-06 0.00% Amr::initialInit() 1 1.289e-06 1.771e-06 2.318e-06 0.00% Other 261 0.01624 0.01857 0.02003 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.275 3.275 3.276 100.00% Amr::coarseTimeStep() 10 3.084 3.084 3.084 94.16% Amr::timeStep() 10 3.072 3.072 3.073 93.81% Castro::advance() 10 3.056 3.056 3.057 93.32% Castro::subcycle_advance_ctu() 10 2.976 2.979 2.981 91.00% Castro::do_advance_ctu() 10 2.976 2.979 2.981 91.00% Castro::construct_ctu_hydro_source() 10 2.232 2.237 2.241 68.42% Gravity::make_radial_gravity() 21 0.3081 0.3175 0.327 9.98% Gravity::get_new_grav_vector() 11 0.2135 0.2154 0.2168 6.62% AmrLevel::FillPatch() 41 0.1873 0.2012 0.2093 6.39% check_for_negative_density() 10 0.0374 0.1017 0.1971 6.02% Castro::construct_old_gravity() 10 0.1797 0.1859 0.1943 5.93% Gravity::get_old_grav_vector() 10 0.1789 0.1852 0.1936 5.91% Castro::construct_new_gravity() 10 0.1875 0.1898 0.1908 5.83% Amr::init() 1 0.1771 0.1773 0.1773 5.41% FillPatchIterator::Initialize 41 0.1568 0.166 0.1727 5.27% Castro::initialize_do_advance() 10 0.1568 0.1666 0.1712 5.23% Amr::initialInit() 1 0.1617 0.1618 0.162 4.94% Amr::InitializeInit() 1 0.05773 0.09366 0.1322 4.04% Amr::defBaseLevel() 1 0.05773 0.09366 0.1322 4.04% FillPatchIterator::FillFromLevel0() 41 0.1164 0.1214 0.1257 3.84% FillPatchSingleLevel 41 0.1163 0.1213 0.1256 3.83% Castro::clean_state() 62 0.1134 0.1163 0.1201 3.67% Castro::expand_state() 10 0.1029 0.1119 0.1162 3.55% Castro::initData() 1 0.04085 0.07676 0.1142 3.49% Castro::estTimeStep() 21 0.02577 0.06876 0.1095 3.34% Amr::FinalizeInit() 1 0.02966 0.06814 0.104 3.17% Castro::do_old_sources() 10 0.09358 0.0976 0.1005 3.07% FabArray::ParallelCopy() 41 0.08019 0.08772 0.09532 2.91% amrex::Copy() 193 0.07806 0.08332 0.08973 2.74% Castro::initialize_advance() 10 0.072 0.07374 0.07672 2.34% Castro::computeInitialDt() 2 0.002142 0.04067 0.07663 2.34% FabArray::setVal() 143 0.06698 0.07133 0.07647 2.33% Castro::do_new_sources() 10 0.06133 0.0661 0.07137 2.18% Castro::computeTemp() 63 0.0618 0.06469 0.06826 2.08% FabArray::ParallelCopy_finish() 41 0.03691 0.0446 0.05558 1.70% Castro::reset_internal_energy(MultiFab) 63 0.04451 0.04641 0.04914 1.50% Castro::reset_internal_energy(Fab) 1008 0.0442 0.04612 0.04883 1.49% Castro::normalize_species() 62 0.04518 0.04622 0.04788 1.46% FabArray::ParallelCopy_nowait() 41 0.03965 0.04302 0.0449 1.37% StateDataPhysBCFunct::() 41 0.03007 0.03355 0.03703 1.13% StateData::FillBoundary(geom) 41 0.02996 0.03344 0.03692 1.13% Castro::construct_new_source() 50 0.0293 0.03137 0.03357 1.02% Gravity::interpolate_monopole_grav() 21 0.02697 0.02745 0.02779 0.85% Castro::construct_new_gravity_source() 10 0.0233 0.0253 0.02764 0.84% Castro::post_init() 1 0.02677 0.02687 0.02709 0.83% Castro::finalize_do_advance() 10 0.01372 0.02008 0.02589 0.79% Amr::writePlotFile() 2 0.02421 0.02451 0.02467 0.75% Castro::post_timestep() 10 0.01511 0.01576 0.01656 0.51% Castro::apply_source_to_state() 20 0.01214 0.0132 0.01404 0.43% FabArray::Saxpy() 20 0.01208 0.01315 0.01398 0.43% VisMF::Write(FabArray) 2 0.009339 0.009977 0.013 0.40% Castro::check_for_nan() 20 0.01052 0.01145 0.01269 0.39% MultiFab::contains_nan() 20 0.0105 0.01142 0.01267 0.39% FabArray::setDomainBndry() 41 0.007701 0.01061 0.01189 0.36% Castro::Castro() 1 0.009673 0.01081 0.01174 0.36% Castro::construct_old_source() 50 0.009629 0.01035 0.01083 0.33% Castro::construct_old_gravity_source() 10 0.009548 0.01027 0.01074 0.33% Castro::computeNewDt() 9 0.0092 0.009209 0.009216 0.28% Castro::initMFs() 1 0.006396 0.006987 0.00785 0.24% Other 261 0.02646 0.02968 0.0322 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6747 KiB 6748 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4539 KiB 4543 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 230 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 247 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (24.12-14-gb3f67385e62f) finalized