Initializing AMReX (25.01)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01) initialized Starting run at 06:19:13 UTC on 2025-01-03. Successfully read inputs file ... Castro git describe: 25.01 AMReX git describe: 25.01 Microphysics git describe: 25.01-2-gbc1ccfa9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015816726 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348709971 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324612398 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.302304428 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325109584 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368813336 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.289806087 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284589004 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.281690594 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.281617251 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.281263076 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007592092 seconds Ending run at 06:19:16 UTC on 2025-01-03. Run time = 3.296730258 Run time without initialization = 3.101575064 Average number of zones advanced per microsecond: 0.845 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2959 ... 3.2962 ... 3.2968 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0715 2.1031 2.1315 64.65% Gravity::make_radial_gravity() 21 0.2946 0.3013 0.3138 9.52% check_for_negative_density() 10 0.07128 0.09973 0.1283 3.89% Castro::initData() 1 0.0369 0.07871 0.1225 3.72% Castro::estTimeStep() 21 0.03253 0.0789 0.1222 3.71% FabArray::ParallelCopy_finish() 41 0.04528 0.0699 0.09714 2.95% amrex::Copy() 193 0.06957 0.07883 0.08817 2.67% FabArray::setVal() 143 0.05955 0.06863 0.08094 2.46% Castro::normalize_species() 62 0.045 0.04803 0.05311 1.61% Castro::reset_internal_energy(Fab) 1008 0.04489 0.04723 0.0491 1.49% FabArray::ParallelCopy_nowait() 41 0.03413 0.03925 0.04089 1.24% FillPatchIterator::Initialize 41 0.02808 0.03355 0.03831 1.16% StateData::FillBoundary(geom) 41 0.02991 0.03242 0.03444 1.04% Castro::construct_new_gravity_source() 10 0.02206 0.02426 0.0281 0.85% Gravity::interpolate_monopole_grav() 21 0.02699 0.02726 0.0277 0.84% Castro::initialize_do_advance() 10 0.01185 0.01773 0.0232 0.70% Castro::computeTemp() 63 0.01829 0.01858 0.01906 0.58% Castro::initialize_advance() 10 0.01005 0.01154 0.01379 0.42% FabArray::Saxpy() 20 0.01038 0.01187 0.01262 0.38% VisMF::Write(FabArray) 2 0.009089 0.009771 0.01246 0.38% MultiFab::contains_nan() 20 0.0102 0.01084 0.01192 0.36% Amr::writePlotFile() 2 0.008532 0.01087 0.01183 0.36% Amr::coarseTimeStep() 10 0.002792 0.009001 0.01135 0.34% Castro::initMFs() 1 0.006204 0.008362 0.01104 0.33% FabArray::setDomainBndry() 41 0.007296 0.009591 0.01084 0.33% Castro::construct_old_gravity_source() 10 0.006911 0.008724 0.00936 0.28% Castro::construct_new_source() 50 0.005687 0.006141 0.006408 0.19% main() 1 0.003805 0.004171 0.004701 0.14% Gravity::get_new_grav_vector() 11 0.002949 0.003441 0.003897 0.12% Gravity::get_old_grav_vector() 10 0.001662 0.001991 0.002297 0.07% AmrLevel::FillPatch() 41 0.0009335 0.001173 0.001531 0.05% Castro::finalize_do_advance() 10 0.0005041 0.0009863 0.001388 0.04% Amr::timeStep() 10 0.0001563 0.0002256 0.0004571 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002777 0.0002872 0.0003218 0.01% Castro::clean_state() 62 0.0001322 0.0001533 0.0001731 0.01% Castro::do_advance_ctu() 10 0.0001443 0.0001565 0.0001728 0.01% FillPatchIterator::FillFromLevel0() 41 9.825e-05 0.0001083 0.0001187 0.00% StateDataPhysBCFunct::() 41 8.86e-05 9.962e-05 0.0001093 0.00% FabArray::ParallelCopy() 41 8.607e-05 9.175e-05 0.0001005 0.00% Amr::FinalizeInit() 1 3.948e-06 1.639e-05 0.0001004 0.00% Castro::do_old_sources() 10 7.623e-05 8.96e-05 9.956e-05 0.00% Castro::Castro() 1 5.172e-05 6.524e-05 9.192e-05 0.00% Castro::construct_old_source() 50 5.995e-05 6.662e-05 7.479e-05 0.00% Castro::do_new_sources() 10 5.441e-05 5.982e-05 7.059e-05 0.00% FillPatchSingleLevel 41 6.175e-05 6.597e-05 7.004e-05 0.00% Castro::subcycle_advance_ctu() 10 4.21e-05 5.096e-05 6.921e-05 0.00% Castro::apply_source_to_state() 20 3.626e-05 4.738e-05 5.548e-05 0.00% Castro::advance() 10 3.913e-05 4.384e-05 4.818e-05 0.00% Amr::defBaseLevel() 1 2.901e-05 3.728e-05 4.488e-05 0.00% Castro::construct_old_gravity() 10 3.299e-05 3.589e-05 3.98e-05 0.00% Castro::construct_new_gravity() 10 2.95e-05 3.372e-05 3.818e-05 0.00% Castro::expand_state() 10 2.056e-05 2.372e-05 2.674e-05 0.00% Castro::check_for_nan() 20 2.263e-05 2.431e-05 2.64e-05 0.00% Castro::computeNewDt() 9 9.011e-06 1.203e-05 2.542e-05 0.00% Castro::post_timestep() 10 1.401e-05 1.648e-05 2.121e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.706e-06 1.081e-05 1.888e-05 0.00% Castro::post_init() 1 8.409e-06 9.178e-06 1.068e-05 0.00% Amr::InitializeInit() 1 2.378e-06 3.558e-06 5.693e-06 0.00% Castro::computeInitialDt() 2 3.075e-06 3.601e-06 4.223e-06 0.00% Amr::init() 1 1.792e-06 2.566e-06 3.81e-06 0.00% Amr::initialInit() 1 1.565e-06 1.885e-06 2.223e-06 0.00% Other 260 0.01575 0.0185 0.0217 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.296 3.296 3.297 100.00% Amr::coarseTimeStep() 10 3.089 3.089 3.089 93.71% Amr::timeStep() 10 3.066 3.068 3.074 93.25% Castro::advance() 10 3.049 3.051 3.055 92.66% Castro::subcycle_advance_ctu() 10 2.965 2.974 2.979 90.37% Castro::do_advance_ctu() 10 2.965 2.974 2.979 90.37% Castro::construct_ctu_hydro_source() 10 2.221 2.224 2.227 67.55% Gravity::make_radial_gravity() 21 0.311 0.3173 0.3277 9.94% AmrLevel::FillPatch() 41 0.1982 0.2173 0.2274 6.90% Gravity::get_new_grav_vector() 11 0.2126 0.2144 0.2163 6.56% FillPatchIterator::Initialize 41 0.1661 0.1852 0.197 5.98% Castro::construct_old_gravity() 10 0.1824 0.187 0.196 5.94% Gravity::get_old_grav_vector() 10 0.1813 0.1862 0.1952 5.92% Amr::init() 1 0.1946 0.1947 0.1948 5.91% Castro::initialize_do_advance() 10 0.173 0.1805 0.1867 5.66% Castro::construct_new_gravity() 10 0.1823 0.1837 0.1848 5.61% Amr::initialInit() 1 0.1787 0.1793 0.1796 5.45% FillPatchIterator::FillFromLevel0() 41 0.118 0.142 0.1617 4.90% FillPatchSingleLevel 41 0.1179 0.1419 0.1616 4.90% Amr::InitializeInit() 1 0.05571 0.1006 0.1447 4.39% Amr::defBaseLevel() 1 0.05571 0.1006 0.1447 4.39% Castro::expand_state() 10 0.1144 0.1262 0.1332 4.04% FabArray::ParallelCopy() 41 0.08559 0.1093 0.1315 3.99% check_for_negative_density() 10 0.07128 0.09973 0.1283 3.89% Castro::initData() 1 0.04067 0.08248 0.1262 3.83% Castro::clean_state() 62 0.114 0.1194 0.124 3.76% Amr::FinalizeInit() 1 0.0348 0.07872 0.1238 3.76% Castro::estTimeStep() 21 0.03253 0.0789 0.1222 3.71% Castro::do_old_sources() 10 0.09331 0.09661 0.1028 3.12% FabArray::ParallelCopy_finish() 41 0.04528 0.0699 0.09714 2.95% Castro::computeInitialDt() 2 0.002167 0.04627 0.09117 2.77% amrex::Copy() 193 0.06957 0.07883 0.08817 2.67% Castro::initialize_advance() 10 0.06672 0.07289 0.08139 2.47% FabArray::setVal() 143 0.05955 0.06863 0.08094 2.46% Castro::computeTemp() 63 0.06354 0.0661 0.06844 2.08% Castro::do_new_sources() 10 0.05972 0.06386 0.06808 2.07% Castro::normalize_species() 62 0.045 0.04803 0.05311 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04517 0.04752 0.04939 1.50% Castro::reset_internal_energy(Fab) 1008 0.04489 0.04723 0.0491 1.49% FabArray::ParallelCopy_nowait() 41 0.03423 0.03934 0.04099 1.24% StateDataPhysBCFunct::() 41 0.03001 0.03252 0.03453 1.05% StateData::FillBoundary(geom) 41 0.02991 0.03242 0.03444 1.04% Castro::construct_new_source() 50 0.02808 0.0304 0.03432 1.04% Castro::post_init() 1 0.03109 0.03178 0.03215 0.98% Castro::construct_new_gravity_source() 10 0.02206 0.02426 0.0281 0.85% Gravity::interpolate_monopole_grav() 21 0.02699 0.02726 0.0277 0.84% Castro::finalize_do_advance() 10 0.01749 0.02229 0.02598 0.79% Amr::writePlotFile() 2 0.0229 0.02316 0.02366 0.72% Castro::post_timestep() 10 0.01588 0.01712 0.01925 0.58% Castro::Castro() 1 0.009547 0.01179 0.01505 0.46% Castro::apply_source_to_state() 20 0.01043 0.01192 0.01268 0.38% FabArray::Saxpy() 20 0.01038 0.01187 0.01262 0.38% VisMF::Write(FabArray) 2 0.009089 0.009771 0.01246 0.38% Castro::check_for_nan() 20 0.01022 0.01086 0.01194 0.36% MultiFab::contains_nan() 20 0.0102 0.01084 0.01192 0.36% Castro::computeNewDt() 9 0.0113 0.01135 0.01136 0.34% Castro::initMFs() 1 0.006204 0.008362 0.01104 0.33% FabArray::setDomainBndry() 41 0.007296 0.009591 0.01084 0.33% Castro::construct_old_source() 50 0.006974 0.00879 0.009434 0.29% Castro::construct_old_gravity_source() 10 0.006911 0.008724 0.00936 0.28% AmrLevel::AmrLevel(dm) 1 0.005166 0.0061 0.007895 0.24% Other 260 0.02039 0.02404 0.02921 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 35 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8667 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6705 KiB 6712 KiB 6715 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4494 KiB 4507 KiB 4516 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 252 KiB 263 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2771 KiB 2775 KiB 2779 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 244 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 52 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01) finalized