Initializing AMReX (25.01)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01) initialized Starting run at 06:19:01 UTC on 2025-01-06. Successfully read inputs file ... Castro git describe: 25.01 AMReX git describe: 25.01 Microphysics git describe: 25.01-2-gbc1ccfa9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014759123 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.334881892 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.317346636 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309390494 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.308116529 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352340951 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296459969 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.286877901 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.286837441 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.284583376 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.286585224 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007635635 seconds Ending run at 06:19:04 UTC on 2025-01-06. Run time = 3.262697329 Run time without initialization = 3.075687963 Average number of zones advanced per microsecond: 0.852 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2623 ... 3.2626 ... 3.2627 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0207 2.0972 2.1572 66.12% Gravity::make_radial_gravity() 21 0.2935 0.2987 0.3097 9.49% check_for_negative_density() 10 0.03425 0.09469 0.1745 5.35% Castro::initData() 1 0.03905 0.07447 0.1201 3.68% Castro::estTimeStep() 21 0.03475 0.07595 0.1153 3.53% amrex::Copy() 193 0.07667 0.08512 0.09279 2.84% FabArray::setVal() 143 0.06826 0.0727 0.07512 2.30% Castro::normalize_species() 62 0.04507 0.048 0.05575 1.71% FabArray::ParallelCopy_finish() 41 0.03639 0.04349 0.05417 1.66% Castro::reset_internal_energy(Fab) 1008 0.04501 0.04664 0.05026 1.54% FabArray::ParallelCopy_nowait() 41 0.03975 0.04312 0.04485 1.37% StateData::FillBoundary(geom) 41 0.03149 0.03381 0.03595 1.10% FillPatchIterator::Initialize 41 0.02861 0.03353 0.03578 1.10% Gravity::interpolate_monopole_grav() 21 0.0267 0.02723 0.02771 0.85% Castro::construct_new_gravity_source() 10 0.02329 0.02496 0.02665 0.82% Castro::computeTemp() 63 0.01794 0.01849 0.0193 0.59% Castro::initialize_do_advance() 10 0.01632 0.01791 0.01873 0.57% Castro::initialize_advance() 10 0.01063 0.01281 0.01513 0.46% FabArray::Saxpy() 20 0.01223 0.01347 0.01469 0.45% FabArray::setDomainBndry() 41 0.00765 0.01076 0.01237 0.38% MultiFab::contains_nan() 20 0.0105 0.01124 0.01216 0.37% VisMF::Write(FabArray) 2 0.00902 0.009479 0.0119 0.36% Amr::writePlotFile() 2 0.008071 0.0105 0.01115 0.34% Castro::construct_old_gravity_source() 10 0.009769 0.0105 0.01095 0.34% Castro::initMFs() 1 0.006159 0.006901 0.007826 0.24% Castro::construct_new_source() 50 0.006199 0.006349 0.006572 0.20% Castro::enforce_min_density() 62 0.005714 0.006059 0.006454 0.20% main() 1 0.003837 0.00404 0.00423 0.13% Gravity::get_new_grav_vector() 11 0.003189 0.003552 0.003898 0.12% Amr::coarseTimeStep() 10 0.0009375 0.002207 0.003087 0.09% Gravity::get_old_grav_vector() 10 0.001713 0.002217 0.002582 0.08% Castro::finalize_do_advance() 10 0.001224 0.001233 0.001272 0.04% AmrLevel::FillPatch() 41 0.0008444 0.001005 0.001102 0.03% Amr::timeStep() 10 0.0001701 0.0002247 0.0004306 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002721 0.0002924 0.0003226 0.01% Castro::do_advance_ctu() 10 0.0001363 0.0001684 0.0001945 0.01% Castro::clean_state() 62 0.0001452 0.0001563 0.0001709 0.01% FillPatchIterator::FillFromLevel0() 41 9.311e-05 0.0001097 0.0001306 0.00% StateDataPhysBCFunct::() 41 9.403e-05 0.0001038 0.000113 0.00% Castro::do_old_sources() 10 8.118e-05 9.278e-05 0.000111 0.00% FabArray::ParallelCopy() 41 8.797e-05 9.477e-05 0.0001028 0.00% Amr::FinalizeInit() 1 4.251e-06 1.618e-05 9.562e-05 0.00% Castro::construct_old_source() 50 6.689e-05 7.329e-05 8.448e-05 0.00% Castro::Castro() 1 5.156e-05 6.735e-05 8.414e-05 0.00% FillPatchSingleLevel 41 6.472e-05 6.927e-05 7.152e-05 0.00% Castro::do_new_sources() 10 4.941e-05 6.121e-05 6.958e-05 0.00% Castro::subcycle_advance_ctu() 10 3.606e-05 5.223e-05 5.949e-05 0.00% Castro::advance() 10 3.98e-05 4.593e-05 5.441e-05 0.00% Castro::apply_source_to_state() 20 4.419e-05 4.912e-05 5.28e-05 0.00% Amr::defBaseLevel() 1 3.215e-05 4.144e-05 5.132e-05 0.00% Castro::construct_old_gravity() 10 3.353e-05 3.853e-05 4.786e-05 0.00% Castro::construct_new_gravity() 10 3.157e-05 3.71e-05 4.241e-05 0.00% Castro::expand_state() 10 2.206e-05 2.864e-05 3.766e-05 0.00% Castro::check_for_nan() 20 2.393e-05 2.471e-05 2.778e-05 0.00% Castro::post_timestep() 10 1.351e-05 1.526e-05 1.761e-05 0.00% Castro::post_init() 1 8.989e-06 1.026e-05 1.259e-05 0.00% Castro::computeNewDt() 9 8.821e-06 9.724e-06 1.079e-05 0.00% Amr::InitializeInit() 1 2.708e-06 3.717e-06 6.111e-06 0.00% Castro::computeInitialDt() 2 3.21e-06 3.806e-06 4.385e-06 0.00% Amr::init() 1 1.852e-06 2.268e-06 2.828e-06 0.00% Amr::initialInit() 1 1.395e-06 1.964e-06 2.753e-06 0.00% Other 199 0.01018 0.01235 0.01369 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.262 3.263 3.263 100.00% Amr::coarseTimeStep() 10 3.064 3.064 3.064 93.91% Amr::timeStep() 10 3.05 3.051 3.052 93.55% Castro::advance() 10 3.035 3.035 3.035 93.02% Castro::subcycle_advance_ctu() 10 2.951 2.955 2.958 90.65% Castro::do_advance_ctu() 10 2.951 2.955 2.958 90.65% Castro::construct_ctu_hydro_source() 10 2.21 2.214 2.218 67.97% Gravity::make_radial_gravity() 21 0.3115 0.3163 0.3248 9.96% Gravity::get_new_grav_vector() 11 0.2126 0.2148 0.2161 6.62% AmrLevel::FillPatch() 41 0.1907 0.2003 0.2079 6.37% Castro::construct_old_gravity() 10 0.1809 0.1852 0.1944 5.96% Gravity::get_old_grav_vector() 10 0.1802 0.1845 0.1938 5.94% Castro::construct_new_gravity() 10 0.1871 0.1894 0.1905 5.84% Amr::init() 1 0.1864 0.1866 0.1867 5.72% check_for_negative_density() 10 0.03425 0.09469 0.1745 5.35% Amr::initialInit() 1 0.1712 0.1713 0.1715 5.26% FillPatchIterator::Initialize 41 0.1598 0.1652 0.1711 5.24% Castro::initialize_do_advance() 10 0.1589 0.1657 0.1701 5.21% Amr::InitializeInit() 1 0.0598 0.0951 0.1419 4.35% Amr::defBaseLevel() 1 0.0598 0.0951 0.1419 4.35% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1209 0.1262 3.87% FillPatchSingleLevel 41 0.1147 0.1208 0.1261 3.86% Castro::clean_state() 62 0.1139 0.1188 0.1254 3.84% Castro::initData() 1 0.04301 0.07836 0.1237 3.79% Castro::estTimeStep() 21 0.03475 0.07595 0.1153 3.53% Castro::expand_state() 10 0.1052 0.1109 0.1153 3.53% Amr::FinalizeInit() 1 0.02952 0.07624 0.1114 3.41% Castro::do_old_sources() 10 0.09567 0.09922 0.1014 3.11% FabArray::ParallelCopy() 41 0.08043 0.0868 0.09413 2.88% amrex::Copy() 193 0.07667 0.08512 0.09279 2.84% Castro::computeInitialDt() 2 0.002211 0.049 0.08426 2.58% Castro::initialize_advance() 10 0.07369 0.07623 0.08028 2.46% FabArray::setVal() 143 0.06826 0.0727 0.07512 2.30% Castro::do_new_sources() 10 0.06197 0.06642 0.07174 2.20% Castro::computeTemp() 63 0.06324 0.06542 0.06988 2.14% Castro::normalize_species() 62 0.04507 0.048 0.05575 1.71% FabArray::ParallelCopy_finish() 41 0.03639 0.04349 0.05417 1.66% Castro::reset_internal_energy(MultiFab) 63 0.0453 0.04693 0.05058 1.55% Castro::reset_internal_energy(Fab) 1008 0.04501 0.04664 0.05026 1.54% FabArray::ParallelCopy_nowait() 41 0.03987 0.04322 0.04495 1.38% StateDataPhysBCFunct::() 41 0.03159 0.03392 0.03605 1.11% StateData::FillBoundary(geom) 41 0.03149 0.03381 0.03595 1.10% Castro::construct_new_source() 50 0.02949 0.03131 0.03302 1.01% Gravity::interpolate_monopole_grav() 21 0.0267 0.02723 0.02771 0.85% Castro::post_init() 1 0.02629 0.02665 0.02697 0.83% Castro::construct_new_gravity_source() 10 0.02329 0.02496 0.02665 0.82% Castro::finalize_do_advance() 10 0.0126 0.01871 0.02428 0.74% Amr::writePlotFile() 2 0.02265 0.02298 0.02321 0.71% Castro::post_timestep() 10 0.01536 0.01604 0.0173 0.53% Castro::apply_source_to_state() 20 0.01227 0.01352 0.01474 0.45% FabArray::Saxpy() 20 0.01223 0.01347 0.01469 0.45% FabArray::setDomainBndry() 41 0.00765 0.01076 0.01237 0.38% Castro::check_for_nan() 20 0.01052 0.01126 0.01218 0.37% MultiFab::contains_nan() 20 0.0105 0.01124 0.01216 0.37% VisMF::Write(FabArray) 2 0.00902 0.009479 0.0119 0.36% Castro::Castro() 1 0.00941 0.01072 0.01183 0.36% Castro::construct_old_source() 50 0.009837 0.01057 0.01102 0.34% Castro::construct_old_gravity_source() 10 0.009769 0.0105 0.01095 0.34% Castro::computeNewDt() 9 0.009454 0.009487 0.009506 0.29% Castro::initMFs() 1 0.006159 0.006901 0.007826 0.24% Castro::enforce_min_density() 62 0.005714 0.006059 0.006454 0.20% Other 199 0.01996 0.02342 0.0262 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 40 B 78 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6719 KiB 6725 KiB 6727 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4519 KiB 4524 KiB 4528 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 231 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2786 KiB 2789 KiB 2790 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 243 KiB 247 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01) finalized